Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
11,506
datasets available to search
ShareScore release 0.9.0
Dataset results
11,506 results for “Dynamics”
Data from: Genetic source-sink dynamics among naturally structured and anthropogenically fragmented puma populations
Fragmentation of wildlife populations is increasing on a global scale and understanding current population genetic structure, genetic diversity, and genetic connectivity is key to informing wildlife management and conservation. We genotyped 992 pumas (Puma concolor) at 42 previously developed microsatellite loci and identified 10 genetic populations throughout the states of California and Nevada, USA. Although some genetic populations had large effective population sizes, others were small and inbred. Genetic diversity was extremely variable (heterozygosity, uHe = 0.33–0.53), with some populations nearly as low as an endangered subspecies, the Florida Panther (P. c. coryi, uHe = 0.24). Specifically, pumas in the Sierra Nevada were genetically diverse and formed the largest genetic source population in the region. In contrast, coastal and southern populations surrounded by urbanization had low genetic diversity, fragmented gene flow, and tended to be genetic sinks. The strong population genetic structuring of pumas across California (FST = 0.05–0.39) is vastly different than other genetic studies in less-urbanized states, including our analysis in Nevada, where pumas had few barriers to gene flow and weak population differentiation. Our results have far-reaching conservation and management implications for pumas and indicate large-scale fragmentation in one of North America's most biodiverse and rapidly-urbanizing regions.
Data from: Fine-scale spatial genetic dynamics over the life-cycle of the tropical tree Prunus africana
Studying fine-scale spatial genetic patterns across life stages is a powerful approach to identify ecological processes acting within tree populations. We investigated spatial genetic dynamics across five life stages in the insect-pollinated and vertebrate-dispersed tropical tree Prunus africana in Kakamega Forest, Kenya. Using six highly polymorphic microsatellite loci, we assessed genetic diversity and spatial genetic structure (SGS) from seed rain and seedlings, and different sapling stages to adult trees. We found significant SGS in all stages, potentially caused by limited seed dispersal and high recruitment rates in areas with high light availability. SGS decreased from seed and early seedling stages to older juvenile stages. Interestingly, SGS was stronger in adults than in late juveniles. The initial decrease in SGS was probably driven by both random and non-random thinning of offspring clusters during recruitment. Intergenerational variation in SGS could have been driven by variation in gene flow processes, overlapping generations in the adult stage or local selection. Our study shows that complex sequential processes during recruitment contribute to SGS of tree populations.
Data from: Dynamic pore structure evolution of the ion adsorbed rare earth ore during the ion exchange process
<p><span>During the leaching process of the ion adsorbed rare earth ore, the pore structure evolution of the ore body plays a vital role in the seepage of the leaching solution. To investigate the evolution of the pore structure during the leaching process, experiments have been carried out with remodeled rare earth ore samples based on physical characteristics of in-situ ores. The seepage rate difference between deionized water leaching solution and 2% NH<sub>4</sub>Cl leaching solution during the active leaching period are analyzed. The porosity and the dynamic pore size evolution of pore structures in the ore body are discussed. Results indicate that along with ion exchange between the rare earth ore and the leaching solution, the porosity of the sample remains constant and the pore structure shows a decreasing trend in the first part and an increasing trend in the second part. Specifically, during the ion exchange process, the number of minimal pores (0~5μm), small pores (5~10μm), and medium pores (10~25μm) increases significantly and the number of medium-large pores (25~60μm), large pores (60~120μm), and mega pores (>120μm) decreases dramatically. Along with the completion of the ion exchange process, the evolution of porous structure shows an opposite trend. The mechanism study reveals that the evolution of pore structure is induced by the difference of ionic strength in the leaching solution during the ion exchange process, where the rare earth ore microparticles will be absorbed or desorbed on to the solid phase.</span></p>
Data from: Long-term dynamics of liana seedlings suggest decelerating increases in liana relative abundance over time
<ol> <li>Over the past decades, tropical forests have experienced both compositional and structural changes. In the Neotropics, researchers at multiple sites have observed significant increases in the abundance and biomass of lianas (i.e. woody vines) relative to trees. However, the role of dynamics at early life stages in contributing to increasing liana abundance remains unclear. </li> <li>We took advantage of a unique dataset on seedling dynamics over 16 years in ~20,000 1-m<sup>2</sup>plots in a tropical forest in Panama to examine temporal and spatial trends in liana and tree seedling abundance. </li> <li>We found that the relative abundance of liana seedlings increased across the study period, from 0.18 in 2001 to 0.24 in 2017. However, increases in liana seedling relative abundance appear to have leveled off in more recent years. The observed increases in liana relative abundance appear to be the result of both higher survival and higher recruitment rates of liana seedlings compared to tree seedlings.</li> <li>Increasing liana abundance in the seedling layer was not explained by annual variation in dry season length, total rainfall, or the proportion of area occupied by canopy gaps. In addition, liana seedlings did not exhibit a demographic advantage (i.e., higher recruitment or survival) over tree seedlings in dry habitats. </li> <li> <i>Synthesis:</i>Our results reveal that seedling communities experienced important compositional changes in the past, but liana seedling relative abundance may have stabilized in recent years. Longer-term monitoring is needed to determine whether tropical forests will continue to experience compositional changes that may alter forest structure and ecosystem function. </li> </ol>
Data from: Disentangling synergistic disease dynamics: Implications for the viral biocontrol of rabbits
European rabbits (Oryctolagus cuniculus) have been exposed to rabbit haemorrhagic disease virus (RHDV) and myxoma virus (MYXV) in their native and invasive ranges for decades. Yet, the long‐term effects of these viruses on rabbit population dynamics remain poorly understood. In this context, we analysed 17 years of detailed capture–mark–recapture data (2000–2016) from Turretfield, South Australia, using a probabilistic state‐space hierarchical modelling framework to estimate rabbit survival and epidemiological dynamics. While RHDV infection and disease‐induced death were most prominent during annual epidemics in winter and spring, we found evidence for continuous infection of susceptible individuals with RHDV throughout the year. RHDV‐susceptible rabbits had, on average, 25% lower monthly survival rates compared to immune individuals, while the average monthly force of infection in winter and spring was ~38%. These combined to result in an average infection‐induced mortality rate of 69% in winter and spring. Individuals susceptible to MYXV and immune to RHDV had similar survival probabilities to those having survived infections from both viruses, whereas individuals susceptible to both RHDV and MYXV had higher survival probabilities than those susceptible to RHDV and immune to MYXV. This suggests that MYXV may reduce the future survival rates of individuals that endure initial MYXV infection. There was no evidence for long‐term changes in disease‐induced mortality and infection rates for either RHDV or MYXV. We conclude that continuous, year‐round virus perpetuation (and perhaps heterogeneity in modes of transmission and infectious doses during and after epidemics) acts to reduce the efficiency of RHDV and MYXV as biocontrol agents of rabbits in their invasive range. However, if virulence can be maintained as relatively constant through time, RHDV and MYXV will likely continue realizing strong benefits as biocontrol agents.
Data from: Long-term prevalence data reveals spillover dynamics in a multi-host (Artemia), multi-parasite (Microsporidia) community
In the study of multi-host parasites, it is often found that host species contribute asymmetrically to parasite transmission. Yet in natural populations, identifying which hosts contribute to parasite transmission and maintenance is a recurring challenge. Here, we approach this issue by taking advantage of natural variation in the composition of a host community. We studied the brine shrimps Artemia franciscana and Artemia parthenogenetica and their microsporidian parasites Anostracospora rigaudi and Enterocytospora artemiae. Previous laboratory experiments had shown that each host can transmit both parasites, but could not predict their actual contributions to the parasites' maintenance in the field. To resolve this, we gathered long-term prevalence data from a metacommunity of these species. Metacommunity patches could contain either or both of the Artemia host species, so that the presence of the hosts could be linked directly to the persistence of the parasites. First, we show that the microsporidian A. rigaudi is a spillover parasite: it was unable to persist in the absence of its maintenance host A. parthenogenetica. This result was particularly striking, as A. rigaudi displayed both high prevalence (in the field) and high infectivity (when tested in the laboratory) in both hosts. Moreover, the seasonal presence of A. parthenogenetica imposed seasonality on the rate of spillover, causing cyclical pseudo-endemics in the spillover host A. franciscana. Second, while our prevalence data was sufficient to identify E. artemiae as either a spillover or a facultative multi-host parasite, we could not distinguish between the two possibilities. This study supports the importance of studying the community context of multi-host parasites, and demonstrates that in appropriate multi-host systems, sampling across a range of conditions and host communities can lead to clear conclusions about the drivers of parasite persistence.
Data from: Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes beetles on La Réunion Island
Insects and nematodes represent the most species-rich animal taxa and they occur together in a variety of associations. Necromenic nematodes of the genus Pristionchus are found on scarab beetles with more than 30 species known from worldwide samplings. However, little is known about the dynamics and succession of nematodes and bacteria during the decomposition of beetle carcasses. Here, we study nematode and bacterial succession of the decomposing rhinoceros beetle Oryctes borbonicus on La Réunion Island. We show that Pristionchus pacificus exits the arrested dauer stage seven days after the beetles´ deaths. Surprisingly, new dauers are seen after 11 days, suggesting that some worms return to the dauer stage after one reproductive cycle. We used high-throughput sequencing of the 16S rRNA genes of decaying beetles, beetle guts and nematodes to study bacterial communities in comparison to soil. We find that soil environments have the most diverse bacterial communities. The bacterial community of living and decaying beetles are more stable but one single bacterial family dominates the microbiome of decaying beetles. In contrast, the microbiome of nematodes is relatively similar even across different families. This study represents the first characterization of the dynamics of nematode-bacterial interactions during the decomposition of insects.
Data from: Repertoire-based individual acoustic monitoring of a migratory passerine bird with complex song as an efficient tool for tracking territorial dynamics and annual return rates
In field ecological and behavioural studies, it is often necessary to identify specific individuals. In birds, colour rings are frequently used to mark individuals; however, rings are often difficult to observe, especially in small species and dense habitats. Acoustic-based monitoring detecting individuals by their characteristic vocalization is a potentially suitable alternative, but this approach is challenging in species with complex songs. On the example of the Tree Pipit (Anthus trivialis), a small migratory passerine often singing in flight or from perches obscured by foliage, we demonstrate that acoustic monitoring based on the syllable repertoire can be very efficient tool for individual recognition. During a 3-year study, we obtained over 500 recordings from males from one study population (a number of them returning after winter). Males banded with colour rings were repeatedly recorded throughout the seasons, and syllable repertoires were determined from spectrograms for each recording. The repertoire of each unambiguously identified male was distinct and stable within as well as between seasons; and males with similar syllable repertoires differed in syntax. Based on the congruence between identification based solely on spectrogram assessment, and that based on observation of colour rings, we inferred that reliable identification of singing males (including non-ringed ones) was possible in the studied population from assessing a repertoire and song syntax of <5-min recording (containing 20–30 songs). The acoustic-based data: (i) increased the overall estimated number of territorial males at the study locality (from 49 ringed to 61), and improved the estimates of the period of their presence; (ii) revealed dynamic within-season changes in territory occupancy that would otherwise be missed; and (iii) allowed identification of returning birds (including non-ringed ones and those actively avoiding approaching humans). Our results suggest that some commonly used methods may substantially underestimate return rates of migratory bird species. Individual acoustic monitoring should be applicable on various bird species with complex song and stable repertoires, and may be particularly useful for those living in dense habitat or sensitive to handling.
Data from: Birth dates vary with fixed and dynamic maternal features, offspring sex, and extreme climatic events in a high-latitude marine mammal
Reproductive synchrony tends to be widespread in diverse species of plants and animals, especially at higher latitudes. However, for long-lived mammals, birth dates for different individuals can vary by weeks within a population. A mother's birth timing can reveal useful information about her reproductive abilities and have important implications for the characteristics and survival of her offspring. Despite this, our current knowledge of factors associated with variation in birth dates is modest. We used long-term data for known-age Weddell seals in Antarctica and a Bayesian hierarchical modeling approach to study how birth dates varied with fixed and temporally varying features of mothers, whether sex allocation varied with birth timing, and annual variation in birth dates. Based on birth dates for 4465 pups born to 1117 mothers aged 4–31, we found that diverse features of mothers were associated with variation in birth dates. Maternal identity was the most important among these. Unlike most studies, which have reported that birth dates occur earlier as mothers age, we found that birth dates progressively occurred earlier in the year in the early part of a mother's reproductive life, reached a minimum at age 16, and then occurred later at later ages. Birth dates were positively related to a mother's age at primiparity and recent reproductive effort. The earliest birth dates were for pups born to prime-age mothers who did not reproduce in the previous year but began reproduction early in life, suggesting that females in the best condition gave birth earlier than others. If so, our finding that male pups tended to be born earlier than females provides support for the Trivers–Willard sex-allocation model. Average birth dates were quite consistent across years, except for 2 years that had notable delays and occurred during the period when massive icebergs were present and disrupted the ecosystem.
Data from: Population structure of a microparasite infecting Daphnia: spatio-temporal dynamics
Background: Detailed knowledge of spatial and temporal variation in the genetic population structure of hosts and parasites is required for understanding of hostparasite coevolution. As hot-spots of contemporary coevolution in natural systems are difficult to detect and long-term studies are restricted to few systems additional population genetic data from various hostparasite systems may provide important insights into the topic. This is particularly true for parasites as these players have been under-investigated so far due to the lower availability of suitable molecular markers. Here we traced genetic variation (based on sequence variants in the internal transcribed spacer region ITS) among seven geographically isolated populations of the ichthyosporean Caullerya mesnili a common microparasite of the cladoceran Daphnia (here the D. longispina hybrid complex). At some sites we also studied parasite genetic variation over time. Then we tested for associations between parasite genotypes and host species. Results: Parasite (and host) populations were significantly structured across space indicating limited dispersal. Moreover the frequency of parasite genotypes varied significantly over time suggesting rapid evolutionary change in Caullerya. Finally the distribution of parasite genotypes was similar across different host species which might in turn have important consequences for parasite epidemiology. Conclusions: The approach proposed here can be applied to track spatial and temporal changes in the population structure of other microparasite species for which sequence variation in the ITS or other highly variable genome regions has been documented but other types of polymorphic markers are lacking. Screening of parasite sequence variants allows for reliable detection of cross-species infections and using advanced sequencing techniques in the near future for detailed studies of parasite evolution in natural hostparasite systems.
Data from: Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods
The potentially important role of northern microrefugia during postglacial dispersal is challenging the view of southern Europe as a refuge and source area of European biota. In groundwaters, large geographic ranges of presumably good dispersers are increasingly suspected to consist of assemblages of cryptic species with narrow ranges. Moreover, a large species range, even when confirmed by molecular evidence, tells us little about the spatiotemporal dynamics of dispersal. Here, we used phylogenetic inferences, species delineation methods and Bayesian phylogeographic diffusion models to test for the likelihood of postglacial colonization from distant refugia among five morphospecies of Proasellus (Isopoda, Asellidae). All morphospecies except one were monophyletic, but they comprised a total of 15–17 cryptic species. Three cryptic species retained ranges that spanned a distance >650 km, similar to that of the nominal morphospecies. Bayesian diffusion models based on mitochondrial markers revealed considerable spatiotemporal heterogeneity in dispersal rates, suggesting that short-time dispersal windows were instrumental in shaping species ranges. Only one species was found to experience a recent, presumably postglacial, range expansion. The Jura and Alpine foothills probably played a major role in maintaining diversity within Proasellus in northern regions by acting both as diversification hotspots and Pleistocene refugia. Gaining insight into the spatiotemporal heterogeneity of dispersal rates revealed contrasting colonization dynamics among species that were not consistent with a global postglacial colonization of Europe from distant refugia.
Data from: A hyperparasite affects the population dynamics of a wild plant pathogen
Assessing the impact of natural enemies of plant and animal pathogens on their host's population dynamics is needed to determine the role of hyperparasites in affecting disease dynamics, and their potential for use in efficient control strategies of pathogens. Here we focus on the long-term study describing metapopulation dynamics of an obligate pathogen, the powdery mildew (Podosphaera plantaginis) naturally infecting its wild host plant (Plantago lanceolata) in the fragmented landscape of the Åland archipelago (southwest Finland). Regionally, the pathogen persists through a balance of extinctions and colonizations, yet factors affecting extinction rates remain poorly understood. Mycoparasites of the genus Ampelomyces appear as good candidates for testing the role of a hyperparasite, i.e. a parasite of other parasites, in the regulation of their fungal hosts' population dynamics. For this purpose, we first designed a quantitative PCR assay for detection of Ampelomyces spp. in field-collected samples. This newly developed molecular test was then applied to a large-scale sampling within the Åland archipelago, revealing that Ampelomyces is a widespread hyperparasite in this system, with high variability in prevalence among populations. We found that the hyperparasite was more common on leaves where multiple powdery mildew strains coexist, a pattern that may be attributed to differential exposure. Moreover, the prevalence of Ampelomyces at the plant level negatively affected the overwinter survival of its fungal host. We conclude that this hyperparasite may likely impact on its host population dynamics and argue for increased focus on the role of hyperparasites in disease dynamics.
Data from: Crop-associated virus infection in a native perennial grass: reduction in plant fitness and dynamic patterns of virus detection
To understand the eco-evolutionary significance of plant viruses in nature, we must (i) quantify the effects of infection on plant fitness and (ii) recognize that native plants are increasingly exposed to crop-associated viruses. Studies of perennials are particularly needed: most of our knowledge of plant-virus interactions is from annuals, yet long-lived species dominate landscapes. Here we used aster models for life-history analysis and longitudinal measures of plant virus status to evaluate multi-year consequences of crop virus infection in a native perennial. We used Barley yellow dwarf virus acquired from wheat to inoculate seedlings of Panicum virgatum L. (switchgrass), a North American prairie grass. We grew inoculated and mock-inoculated individuals of two ecotypes for 3 years in the field. We measured plant size, infection status and fitness components. Aster modelling provided integrated multi-year measures of fitness. Crop virus inoculation reduced multi-year native plant fitness by 30% over 2 years despite generally asymptomatic infection and evidence of resistance. This reduction was greater than predicted from individual fitness components or most size measures. Ecotypes differed in response, with the lowland ecotype experiencing higher apparent recovery from infection. Virus treatment in the upland ecotype delayed flowering phenology and reduced seed filling. Synthesis. Our use of field experimentation, surveys of plant infection status and aster modelling demonstrates a rigorous and broadly applicable approach for quantifying the effects of viruses and other microbes on multi-year plant fitness. We found that a crop virus had negative multi-year effects on native plant fitness even after infection was no longer detected. Viruses may have substantial effects on native vegetation with domestication of landscapes and agricultural expansion.
Data from: The relevance of gene flow in metapopulation dynamics of an oceanic island endemic, Olea europaea subsp guanchica
Theoretical and empirical studies suggest that geographical isolation and extinction-recolonization dynamics are two factors causing strong genetic structure in metapopulations. Here, we investigated the effect of population age structure and isolation by distance in the patterns of genetic diversity in a tree species (Olea europaea subsp. guanchica) sporadically affected by volcanic events across the Canarian archipelago. Genetic variation was assessed at six nuclear microsatellites (nDNA) and six chloroplast fragments (cpDNA) in nine subpopulations sampled on four oceanic islands. Subpopulations occurring on more recent substrates were more differentiated than those on older substrates, but within-subpopulation genetic diversity was not significantly different between age groups for any type of marker. Contrary to the general trend for island systems, between-island differentiation was extremely low, and lower than differentiation between subpopulations on the same island. The pollen-to-seed ratio was close to one, two orders of magnitude lower than the average estimated for other wind-pollinated, animal-dispersed plants. Our results showed that population turnover and geographical isolation increased genetic differentiation relative to an island model at equilibrium, but overall genetic structure was unexpectedly weak for a species distributed among islands. This empirical study shows that extensive gene flow, particularly mediated by seeds, can ameliorate population subdivision resulting from extinction-recolonization dynamics and isolation by distance
Data from: Effect of pyric herbivory on source-sink dynamics in grassland birds
Grasslands world-wide provide a host of ecosystem services. In particular, these grasslands serve as biodiversity repositories for a myriad of imperilled animal species. One such group is grassland birds, which have experienced significant declines, predominantly caused by extensive loss and degradation of native grasslands. Rangeland management that promotes increasing and sustaining livestock production through reducing the inherent, disturbance-driven variability that historically occurred in grasslands is considered a major contributing factor to these declines. An alternative approach to this homogeneous management paradigm attempts to restore a shifting mosaic of disturbance patches across the landscape through the spatial and temporal interactions of fire and grazing (i.e. pyric herbivory). Application of pyric herbivory through patch-burn grazing increases overall habitat heterogeneity, likely a critically important factor in maintaining and enhancing grassland bird populations. We compared reproductive rates and estimates of fecundity of three grassland birds nesting in grasslands maintained by traditional and patch-burn grazing management paradigms in the Southern Great Plains of North America. Additionally, we used a sensitivity analysis approach to assess population stability (i.e. λ = 1) and source–sink population dynamics under the two management practices. Nest survival for dickcissels Spiza americana and grasshopper sparrows Ammodramus savannarum was higher in patch-burned grasslands than in traditionally managed grasslands, while nest survival for eastern meadowlarks Sturnella magna was higher in traditionally managed grasslands than in patch-burned grasslands. Dickcissels and grasshopper sparrows responded positively to patch burning with source habitats occurring over a wider range of survival rates under patch burning than traditional management, while no clear pattern emerged in source–sink dynamics of eastern meadowlarks. Synthesis and applications. Management strategies such as patch-burn grazing offer opportunities to restore landscape heterogeneity to benefit bird communities while maintaining livestock production goals. Applying patch-burn grazing to rangelands can increase productivity of grassland birds and could be effective for reversing the decline of grassland birds by providing source habitats more consistently than traditional rangeland management. Our results emphasize the utility of using sensitivity analyses to determine source–sink population dynamics when evaluating management practices. However, land managers should consider that source–sink models have shortcomings and designation of a habitat as a sink does not necessarily mean the habitat has low conservation value.
Data from: Trpc2 Pseudogenization dynamics in bats reveal ancestral vomeronasal signaling, then pervasive loss
Comparative methods are often used to infer loss or gain of complex phenotypes, but few studies take advantage of genes tightly linked with complex traits to test for shifts in the strength of selection. In mammals vomerolfaction detects chemical cues mediating many social and reproductive behaviors and is highly conserved, but all bats exhibit degraded vomeronasal structures with the exception of two families (Phyllostomidae and Miniopteridae). These families either regained vomerolfaction after ancestral loss, or there were many independent losses after diversification from an ancestor with functional vomerolfaction. In this study, we use the Transient receptor potential cation channel 2 (Trpc2) as a molecular marker for testing the evolutionary mechanisms of loss and gain of the mammalian vomeronasal system. We sequenced Trpc2 exon 2 in over 100 bat species across 17 of 20 chiropteran families. Most families showed independent pseudogenizing mutations in Trpc2, but the reading frame was highly conserved in phyllostomids and miniopterids. Phylogeny-based simulations suggest loss of function occurred after bat families diverged, and purifying selection in two families has persisted since bats shared a common ancestor. As most bats still display pheromone-mediated behavior, they might detect pheromones through the main olfactory system without using the Trpc2 signaling mechanism.
Data from: Dynamics of marsh-mangrove ecotone since the mid-Holocene: a palynological study of mangrove encroachment and sea level rise in the Shark River Estuary, Florida
Sea level rise and the associated inland shift of the marsh-mangrove ecotone in south Florida have raised many scientific and management concerns in recent years. Holocene paleoecological records can provide an important baseline to shed light on the long-term dynamics of vegetation changes across this ecotone in the past, which is needed to predict the future. In this study, we present palynological, X-ray fluorescence, and loss-on ignition data from four sedimentary cores recovered from a 20-km marine-to-freshwater transect along the Shark River Estuary, southwest Everglades, to document the patterns and processes of coastal vegetation changes in response to sea level rise since the mid-Holocene. Our record indicates that freshwater marsh progressively replaced marl prairies at the Shark River Estuary between 5700 and 4400 cal yr BP. As marine transgression continued, marine influence reached the threshold necessary for mangroves to establish at the current mouth of the Shark River Slough at 3800 cal yr BP. During the next 3000 years, although sea level rise in the Western North Atlantic slowed down to 0.4 mm/yr, a spatial and temporal gradient was evident as the marsh-mangrove ecotone shifted inland by 20 km from 3800 to 800 cal yr BP, accompanied by a gradual landward replacement of freshwater marsh by mangrove forest. If sea level continues to rise at 2.33 mm/yr in the 21st century in south Florida, it is possible that marine influence will reach the threshold for mangroves to establish in the central Everglades, and we could expect a much more aggressive mangrove encroachment toward the northern and interior parts of south Florida in the next few centuries.
Data from: Seasonal and spatial dynamics of gas ebullition in a temperate water-storage reservoir
Gas ebullition of river impoundments plays an increasingly significant role, particularly in transporting methane CH4 from their sediments to the atmosphere, and contributing to the global carbon budget and global warming. Quantifying stochastic and episodic nature of gas ebullition is complicated especially when conventionally conducted by using coverage-limited gas traps. Current knowledge of seasonality in a reservoir's gas ebullition is lacking in the literature. For this reason, advanced acoustic surveying was intensively applied to determine spatiotemporal distributions of gas ebullition in a European water-storage reservoir for two years. Additionally, the sampling was accompanied with gas collecting for analyzing gas composition. The gas released from the reservoir was primarily composed of CH4 (on average 52%, up to 94%). The longitudinal distribution of gas ebullition was mainly determined by a proximity to the river inflow as a source of organic matter. A magnitude of ebullitive fluxes within the reservoir varied up to 1,300 mL m-2 d-1(30 mmol CH4 m-2 d-1). The most significant period of ebullition has turned out to be in fall, on average reaching a sevenfold ebullitive flux (70 mL m-2 d-1, 1.6 mmol CH4 m-2 d-1) higher than in the rest of the season. A substantial contribution to the fall peak was induced by an expansion of gas ebullition into greater depths, covering two thirds of the reservoir in late fall. The study demonstrates that the ebullitive fluxes of the temperate water storage reservoir were correlated to season, depth, and inflow proximity.
Data from: Temporal dynamics in animal community assembly during post-logging succession in boreal forest
Species assemblages can result from deterministic processes, such as niche differentiation and interspecific interactions, and from stochastic processes, such as random colonisation and extinction events. Although changes in animal communities following disturbances have been widely examined, few studies have investigated the mechanisms structuring communities during ecological succession. We assessed the impact of logging on small mammal and beetle assemblages in landscapes dominated by old-growth boreal forests. Our objectives were to 1) characterize variations in communities during the first 66 years of post-harvest forest succession, 2) determine if there are non-random patterns of species co-occurrence (i.e., deterministic processes), and if there are, 3) establish whether non-random co-occurrences are best explained by habitat attributes or by interspecific interactions. We captured small mammals and beetles along a gradient of forest succession (5-66 years) and in old-growth forest, and characterized key vegetation attributes. First, we tested whether community compositions in clear-cut stands became similar to those in natural stands after 66 years. We then used null models, which were either unconstrained or constrained by habitat attributes, to address the last two objectives and distinguish effects of vegetation attributes from interspecific interactions on community assembly. We showed that beetle assemblages differed in stands 21-30 years post-harvest compared to old-growth forests. In contrast, harvesting did not influence the composition of small mammal communities. Overall, our results suggest that community assembly during forest succession is driven by both stochastic and deterministic processes, the latter being linked to interspecific interactions more strongly than to vegetation attributes.
Data from: Novel application of explicit dynamics occupancy models to ongoing aquatic invasions
1. Identification of suitable habitat where invasive species can establish is an important step towards controlling their spread. Accurate identification is difficult for new or slow invaders because unoccupied habitats may be suitable given enough time for dispersal and occupied habitats may prove to be unsuitable for establishment. 2. To identify suitable habitat of a recent invader, I used an explicit dynamics occupancy modeling framework to evaluate habitat covariates related to successful and failed establishments of American bullfrogs (Lithobates catesbeianus) within the Yellowstone River floodplain of Montana, USA from 2012-2016. 3. During this 5-year period, bullfrogs failed to establish at most sites they colonized. Bullfrog establishment was most likely to occur and least likely to fail at sites closest to human-modified ponds and lakes and those with emergent vegetation. These habitat covariates were generally associated with the presence of permanent water. 4. Suitable habitat for bullfrog establishment is abundant in the Yellowstone River floodplain, though many sites with suitable habitat remain uncolonized. Thus, the maximum distribution of bullfrogs is much greater than their current distribution. 5. Synthesis and applications. Focused control efforts on habitats with or proximate to permanent waters are most likely to reduce the potential for bullfrog establishment and spread. The novel application of explicit dynamics occupancy models is a useful and widely applicable tool for guiding management efforts towards those habitats where new or slow invaders are most likely to establish and persist.07-Aug-2017
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.