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Supplementary material 2 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Component data at the four successive thresholds used to illustrate Figure 5: Explanation note: Component data are used to illustrate the structure of the subset of Bactrocera carambolae and Bactrocera dorsalis populations. The highest Betweenness-centrality is highlighted in blue.
Supplementary material 1 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Component data at the five successive thresholds used to illustrate Figure 4: Explanation note: Component data are used to illustrate the structure of the subset of Bactrocera carambolae populations. The Highest Betweenness-centrality is highlighted in blue.
Supplementary material 2 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786
Figure S2: Explanation note: Maximum likelihood tree, based the EF-1α gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.
Supplementary material 1 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786
Figure S1: Explanation note: Maximum likelihood tree, based the COI gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.
Supplementary material 4 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Median-joining networks of Himalayan wolf and related wolf and dog clades : Explanation note: Median-joining networks of Himalayan wolf and related wolf and dog clades. Golden jackal and Ethiopian wolf haplotypes are shown for comparison. Circle size and branches are proportional to sampled haplotype frequency and number of nucleotide mutation steps among haplotypes, respectively. Branch numbers refer to mutation steps separating individual haplotypes. Scat samples sequenced in this study are represented by arrows falling within the Himalayan wolf (HWF) and Indian feral dog (IDH) haplotypes. Nomenclature for the African wolf follows Koepfli et al. (2015).
Supplementary material 2 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Genebank sequences analysed in this study : Explanation note: GenBank accession numbers for sequences analyzed in this study.
Supplementary material 1 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Best model selection for Bayesian analysis : Explanation note: Estimating the best model of molecular substitution inferred using Log Bayes Factors (LBF) from Bayesian posterior distributions in Mr Bayes. Rate variation for tested models - gamma distributed rate variation across sites (gamma); gamma distributed with proportion of invariable sites (invgamma); rate variation with proportion of invariable sites (propinv); equal rate variation across sites (equal).
Supplementary material 1 from: Colihueque N, Gantz A, Rau JR, Parraguez M (2015) Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence. ZooKeys 534: 135-146. https://doi.org/10.3897/zookeys.534.5953
Pictures of external morphology of specimens of Tyto alba and Asio flammeus collected in southern Chile: Explanation note: Pictures of ventral and dorsal views of specimens showing plumage color and overall appearance. Data on body mass of these specimens are also provided.
Supplementary material 3 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Aligned CR sequences of selected samples of wolves and dogs from GenBank, with the obtained scat samples : Explanation note: Aligned CR sequences of selected samples of wolves, dogs from GenBank, with scat samples obtained in this study. Numbers refer to mtDNA nucleotide positions referenced with respect to the complete mtDNA genome of gray wolf (GenBank Accession No. KF857179). Scat sequences D2137, D2138, D2139 and D2143 match each other differs from known Himalayan wolf haplotypes by at least two substitutions, while D2140 completely matches domestic dog and a wolf sequence in GenBank.
Supplementary material 4 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Comparisons among three different the individual admixture plots: Explanation note: Comparisons among the individual admixture plots of 289 individuals, for K = 3, considering correlated allele frequency, uncorrelated allele frequency, and missing data as recessive homozygotes for the null alleles, respectively.
Supplementary material 3 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786
Figure S3: Explanation note: Maximum likelihood tree, based the period gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.
Supplementary material 3 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Component data at the four successive thresholds used to illustrate Figure 6: Explanation note: Component data are used to illustrate the structure of the subset of the Salaya5 strain and wild populations. The highest Betweenness-centrality is highlighted in blue.
Supplementary material 2 from: Hogendoorn K, Stevens M, Leijs R (2015) DNA barcoding of euryglossine bees and the description of new species of Euhesma Michener (Hymenoptera, Colletidae, Euryglossinae). ZooKeys 520: 41-59. https://doi.org/10.3897/zookeys.520.6185
Phylogenetic relationships of euryglossine species based on CO1 sequence data: Explanation note: tree based on CO1 sequence data.
Supplementary material 1 from: Li S, Ricchiardi E, Bai M, Yang X (2016) A taxonomy review of Oreoderus Burmeister, 1842 from China with a geometric morphometric evaluation (Coleoptera, Scarabaeidae, Valgini). ZooKeys 552: 67-89. https://doi.org/10.3897/zookeys.552.6096
Figure A.1 Minimum spanning tree mapped onto a PCA plot; Table A.1–4 Difference in shapes of four characters among species. :
Supplementary material 1 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
List of localities of Zospeum isselianum: Explanation note: List of localities of Zospeum isselianum. A − Austria, BiH − Bosnia and Herzegovina, Cro − Croatia, Slo − Slovenia, Ita − Italy, CBSS − Collection of Croatian Biospeleological Society, CSR SASA – Malacological collection of the Biological Institute of the Centre for Scientific Research of the Slovenian Academy of Sciences and Arts in Ljubljana, SMNH – Malacological collection of the Slovenian Museum of Natural History, LIT – data from literature.
Supplementary material 1 from: Giurginca A, Šustr V, Tajovský K, Giurginca M, Matei I (2015) Spectroscopic parameters of the cuticle and ethanol extracts of the fluorescent cave isopod Mesoniscus graniger (Isopoda, Oniscidea). In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 111–125. https://doi.org/10.3897/zookeys.515.9395
Autofluorescence of living Mesoniscus graniger: Explanation note: Living Mesoniscus graniger individuals recorded by Canon EOS camera on the cave sediment inside Ardovská Cave (Slovak Karst, Slovakia) under white LED lamp and UV lamp consecutively.
Supplementary material 2 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Digital image stack used for 3D-reconstruction of the mandibulo-tentorial complex of Hydroschendyla submarina: Explanation note: Series of transverse histological sections from anterior to posterior, provided as movie.
Supplementary material 1 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Digital image stack used for 3D-reconstruction of the mandibulo-tentorial complex of Dicellophilus carniolensis: Explanation note: Series of transverse histological sections from anterior to posterior, provided as movie.
Supplementary material 1 from: Papastefanou G, Panayiotou E, Mylonas M, Simaiakis SM (2015) Centipede assemblages along an urbanization gradient in the city of Heraklion, Crete (Greece). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 163-179. https://doi.org/10.3897/zookeys.510.8414
Abundance and activity density of centipede species per sampling site.: Explanation note: List of species and individuals captured at each sampling site.
Supplementary material 1 from: Agnarsson I, Jencik B, Veve G, Hanitriniaina S, Agostini D, Goh S, Pruitt J, Kuntner M (2015) Systematics of the Madagascar Anelosimus spiders: remarkable local richness and endemism, and dual colonization from the Americas. ZooKeys 509: 13-52. https://doi.org/10.3897/zookeys.509.8897
Data matrix: Explanation note: Data matrix set of five aligned and concatenated mtDNA and nuDNA loci.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.