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Dataset for WRR journal "Pore space deformation and its implications for two-phase flow through porous media: A micro-scale experimental investigation"
<p>Pressure drop, pore network model</p> <p>Calculation of REVs, strains, absolute and relative permeabilities, porosities profiles, grain size distribution, pore and throat size distribution. coordination number, aspect ratio, etc.</p>
FIGURE 5 in The first mitochondrial genome of Creophilus Leach and Platydracus Thomson (Coleoptera: Staphylinidae: Staphylinini) and phylogenetic implications
FIGURE 5 Consensus trees built with different datasets under the respective best-fitting partitioning scheme and substitution model selected by AIC (see Table 2). (A) FP scheme of P1P2R matrix; (B) FP scheme of P12R matrix; (C) FP scheme of P2R matrix; (D) NP scheme of AA matrix (C60). The branch lengths are proportional to the number of nucleotide or amino acid substitutions. The species followed by an asterisk (*) are sequenced for this study. Coloured circles indicate bootstrap support. Nodes with 90–94 bootstrap values are labelled by red; 95–99 by yellow; 100 by blue. The expanded trees and trees built with alternative models can be found in the supplementary files at Zenodo (10.5281/zenodo.5847830).
FIGURE 2 in The first mitochondrial genome of Creophilus Leach and Platydracus Thomson (Coleoptera: Staphylinidae: Staphylinini) and phylogenetic implications
FIGURE 2 Relative synonymous codon usage (RSCU) of C. maxillosus and P. impotens. Codon families (in alphabetical order) are provided below the horizontal axis.
FIGURE 1 in The first mitochondrial genome of Creophilus Leach and Platydracus Thomson (Coleoptera: Staphylinidae: Staphylinini) and phylogenetic implications
FIGURE 1 Gene map of the mitochondrial genome of C. maxillosus and P. impotens. Genes outside the map are transcribed counterclockwise (reverse strand), whereas those inside are transcribed clockwise (forward strand). The outermost circle shows the gene features, sandy brown for rRNAs, salmon for tRNAs, and light sea green for PCGs. The innermost circle shows the GC content calculated in every 50-site window.
FIGURE 4 in The first mitochondrial genome of Creophilus Leach and Platydracus Thomson (Coleoptera: Staphylinidae: Staphylinini) and phylogenetic implications
FIGURE 4 Inferred secondary structures of 22 tRNAs of P. impotens. The red bases are anticodon. The tRNAs are labelled with the abbreviations of their corresponding amino acids according to the IUPAC-IUB code.
DNA barcoding reveals generalization and host overlap in hummingbird flower mites: implications for the Mating Rendezvous Hypothesis
Hummingbird flower mites are assumed to monopolize single host plant species due to sexual selection for unique mating rendezvous sites. We tested the main assumption of the Mating rendezvous hypothesis -extreme host specialization- by reconstructing interactions among tropical hummingbird flower mites and their host plants using DNA barcoding and taxonomic identifications. We collected 10,654 mites from 489 flowers. We extracted DNA from 1928 mite specimens and amplified the cytochrome c oxidase I (CO1) DNA barcode. We analyzed the network structure to assess the degree of generalization or specialization of mites to their host plants. We recorded 18 species of hummingbird flower mites from three genera (Proctolaelaps, Rhinoseius and Tropicoseius) interacting with 14 species of plants. We found that generalist mites are common, and congeneric mite species often share host plants. Our results challenge the assumption of strict specialization that supports this system as an example of mating rendezvous evolution.
Results to "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"
<p>All results file for the manuscript "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"</p>
Quantitative comparison of respiratory aerosol implicates speech as a principal driver in asymptomatic transmission of airborne disease
<p>Video recordings of breath and speech droplets. </p> <p>The first set of recordings shows breath droplets, enlarged in size due to nucleated condensation, while crossing a 0.7-mm thickness light-sheet at the original recording speed (120 f/s) and in slow motion (24 f/s).</p> <p>The second set of recordings shows droplets generated by speaking a single word, ‘popeye’, while traversing a low intensity (~0.1W/cm<sup>2</sup>) light-sheet of 13 mm thickness. The recordings are shown at the original recording speed (120 f/s), in slow motion (24 f/s) and after background subtraction of Raleigh scattering and other time-invariant sources of light.</p>
FIGURE 1.2 in Molecular phylogeny of Cousinia sections Albidae, Stenocephalae and Cousinia (Asteraceae): Systematic implications
FIGURE 1.2. Fifty percent majority rule consensus tree resulting from Bayesian analysis of the ITS dataset. Numbers above branches are posterior probabilities (PP). Green: section Albidae; blue: sect. Stenocephalae; red: sect. Cousinia.
FIGURE 1.1 in Molecular phylogeny of Cousinia sections Albidae, Stenocephalae and Cousinia (Asteraceae): Systematic implications
FIGURE 1.1. Fifty percent majority rule consensus tree resulting from Bayesian analysis of the ITS dataset. Numbers above branches are posterior probabilities (PP).
Stability of a Mixed-Valence Hydrous Iron-Rich Oxide: Implications for Water Storage and Dynamics in the Deep Lower Mantle
<p>The XRD datasets in Figure 1, Figure2A, Figure2B, Figure4A, Figure4B, Figure6A, and Figure6B.</p>
Simulation data for "A new convective parameterization applied to Jupiter: implications for water abundance near the 24deg N region"
<p>Simulation outputs and initialization for the journal article titled "A new convective parameterization applied to Jupiter: implications for water abundance near the 24º N region" by Sankar & Palotai.</p>
Supplemental Datafiles for the manuscript "Crustal structure of northern Borneo from VDSS: Implications for subduction termination and the tectonic reconstruction of SE Asia"
<p>Processed waveform data (windowed/filtered) from the seismic stations for the Virtual Deep Seismic Sounding (VDSS) study in northern Borneo.</p>
Figure 1 in Filling Linnean shortfalls increases endemicity patterns: conservation and biogeographical implications for the extreme case of Liolaemus (Liolaemidae, Squamata) species
Figure 1. Distribution of L. dorbignyi in 2000 (left) and the current (2020) distribution of L. dorbignyi, L. huayra, L. inti, L. scrocchii and L. vulcanus, species that were all considered populations of L. dorbignyi in 2000 (right).
Figure 3 in Filling Linnean shortfalls increases endemicity patterns: conservation and biogeographical implications for the extreme case of Liolaemus (Liolaemidae, Squamata) species
Figure 3. Species composition and extent of occurrence within the 11 well-studied species clades of Liolaemus, across the three studied periods (1980, 2000 and 2020). Coloured circles indicate the extent of occurrence of each species based on the thresholds of B1criteria of IUCN (green <20 000 km2 = LC/NT; yellow <5000 km2 = VU; orange <500 km2 = EN; red> 500 km2 = CR). Pie charts show the proportion of the studied species for each period corresponding to each conservation status based on the B1 criteria of IUCN.
FIGURE 4 in Thesea pyrrha sp. nov., a new shallow-water octocoral (Cnidaria, Anthozoa) from southwestern Atlantic, and implications on the systematics of the genus
FIGURE 4. Phylogenetic reconstruction with Maximum likelihood (left) and Bayesian Inference (right) of the families Gorgoniidae and Plexauridae based on the concatenated dataset (mtMutS + COI+ 28S), including (purple) Thesea pyrrha sp. nov.
FIGURE 2 in Thesea pyrrha sp. nov., a new shallow-water octocoral (Cnidaria, Anthozoa) from southwestern Atlantic, and implications on the systematics of the genus
FIGURE 2. Sclerites of Thesea pyrrha sp. nov. (USNM 73349, holotype). A, B: Double-faced sclerites of the outer coenenchymal layer; C: spindles of the calyces; D: spindles-like sclerites of the outer coenenchymal layer; E: spindles of the inner coenenchymal layer; F: polypar sclerites.
FIGURE 3. Images A and B in Thesea pyrrha sp. nov., a new shallow-water octocoral (Cnidaria, Anthozoa) from southwestern Atlantic, and implications on the systematics of the genus
FIGURE 3. Images A and B shows Thesea pyrrha sp. nov. in situ. All photographed in Santa Catarina State, Brazil. Photos: Edson Faria Júnior.
FIGURE 1 in Thesea pyrrha sp. nov., a new shallow-water octocoral (Cnidaria, Anthozoa) from southwestern Atlantic, and implications on the systematics of the genus
FIGURE 1. Thesea pyrrha sp. nov. (USNM 73349, holotype). A: colony in stereo view; B: Large two-faced sclerite in stereo view; C, D: details of the calyces in stereo view.
Taxonomic revision of Chinemys pani (Testudines: Geoemydidae) from the Pleistocene of Taiwan and its implications of conservation paleobiology
<p>Proper taxonomic identification is critical to our understanding of biodiversity and the underlying evolutionary history. Here we re-examine the cast of the holotype of <em>Chinemys pani</em>, a geoemydid turtle from the Pleistocene of Taiwan; the actual specimen was not curated appropriately after the original publication and was most likely lost. Our results provide substantial evidence to show that <em>Chinemys pani</em>should be identified as <em>Mauremys reevesii</em>. The replica, though not ideal, preserves various morphological features that allow reliable taxonomic identification to <em>Mauremys reevesii</em>, including the presence of three longitudinal keels on the carapace, the second to sixth neural bones anteriorly short-sided, the lack of movable plastral hinge. In addition, we also confirm that the original diagnostic features that established the new taxon: <em>Chinemys pani</em>– are polymorphic characters of <em>Mauremys reevesii</em>. Our taxonomic revision of a Pleistocene geoemydid turtle from Taiwan resolves the debate on whether <em>Mauremys reevesii</em>should be a native turtle in Taiwan instead of an introduced invasive species. More importantly, this study offers new insights into the origin of modern biodiversity in Taiwan and gives a straightforward example of how fossils can be applied to conservation policies.Proper taxonomic identification is critical to our understanding of biodiversity and the underlying evolutionary history. Here we re-examine the cast of the holotype of <em>Chinemys pani</em>, a geoemydid turtle from the Pleistocene of Taiwan; the actual specimen was not curated appropriately after the original publication and was most likely lost. Our results provide substantial evidence to show that <em>Chinemys pani</em>should be identified as <em>Mauremys reevesii</em>. The replica, though not ideal, preserves various morphological features that allow reliable taxonomic identification to <em>Mauremys reevesii</em>, including the presence of three longitudinal keels on the carapace, the second to sixth neural bones anteriorly short-sided, the lack of movable plastral hinge. In addition, we also confirm that the original diagnostic features that established the new taxon: <em>Chinemys pani</em>– are polymorphic characters of <em>Mauremys reevesii</em>. Our taxonomic revision of a Pleistocene geoemydid turtle from Taiwan resolves the debate on whether <em>Mauremys reevesii</em>should be a native turtle in Taiwan instead of an introduced invasive species. More importantly, this study offers new insights into the origin of modern biodiversity in Taiwan and gives a straightforward example of how fossils can be applied to conservation policies.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.