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Reference data for Quartet DSeQC Report
<p>This Quartet quality control pipeline evaluate the performance of reads quality and variant calling quality. This pipeline accepts FASTQ format input files or VCF format input files. If the users input FASTQ files, this APP will output the results of pre-alignment quality control from FASTQ files, post-alignment quality control from BAM files and variant calling quality control from VCF files. <a href="https://gatk.broadinstitute.org/hc/en-us/articles/360035535932-Germline-short-variant-discovery-SNPs-Indels-">GATK best practice pipelines</a> (implemented by <a href="https://support.sentieon.com/manual/">SENTIEON software</a>) were used to map reads to the reference genome and call variants. If the users input VCF files, this APP will only output the results of variant calling quality control.</p> <p>More details on <a href="https://chinese-quartet.org">Quartet Data Portal</a> and <a href="https://docs.chinese-quartet.org/">QDP DocSite</a>.</p>
Translating Non-Binary Coming-Out Reports: Gender-Fair Language Strategies and Use in News Articles
<p>Materials used for the "Translating Non-Binary Coming-Out Reports: Gender-Fair Language Strategies and Use in News Articles" paper appeared in the Journal of Specialised Translation, issue 40. </p> <p>The .xlsx files contain links to the analysed texts as well as a first annotation that was refined in SPSS (see .sav files). </p>
FIG. 1 in What is for dinner? First report of human blood in the diet of the hairy-legged vampire bat Diphylla ecaudata
FIG. 1. Topology of Bayesian inference (SYM + gamma distribution) and maximum parsimony based on 260 bp of Cytb between sequences obtained from fecal samples of D. ecaudata in the Caatinga drylands of Northeastern Brazil and sequences of H. sapiens, G. gallus, and D. ecaudata originating from GenBank. The number above and below the branches indicate the statistic support for branches of posterior probabilities and bootstrap, respectively. Sequences from GenBank show their respective access codes
Resolved crystal structure CCDC 2226587 reported to J. Mol. Struct. 1284 (2023) 135362 in space group P21/n
<p>Contribution M. Lutz, J. Mol. Struct. 1284 (2023) 135362 has reported crystal structural determination of zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate (CCDC 2226587) solved in noncentrosymmetric P21 space group.</p> <p>The ADDSYM test assumes a centrosymmetric P21/n space group (<strong>Figure 1</strong>.)</p> <p>Consider the original 2226587.cif of work M. Lutz, J. Mol. Struct. 1284 (2023) 135362. Its checkcif according to [https://checkcif.iucr.org/] indicates PLAT111_ALERT_2_G: ADDSYM Detects New (Pseudo) Centre of Symmetry, showing 85 %Fit (see 2226587_P21_checkcif.pdf.)</p> <p>The issue has not been addressed by the author of paper J. Mol. Struct. 1284 (2023) 135362. </p> <p> </p> <p>The author of the current contribution, who is also co-author of work B. Ivanova, M. Spiteller, J. Mol. Struct. 1248 (2022) 131488, cited by the author of work J. Mol. Struct. 1284 (2023) 135362, resolved the structure (CCDC 2226587; 2226587.cif,) using only the data on 2226587.cif into suggested P21/n space group (2226587_P21-n.cif); thus, lacking discrepancy with the ADDSYM test (<strong>Figures 2</strong> and <strong>3</strong>.)</p> <p>Consider 2226587_P21-n_res.txt, 2226587_P21-n.cif, and 2226587_P21-n_lst.txt files.</p> <p> </p> <p> </p> <p>Description of files:</p> <p>2226587.cif</p> <p>(Deposited to Cambridge crystallographic database [https://www.ccdc.cam.ac.uk/] structural solution of zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate (CCDC 2226587) as reported to M. Lutz, J. Mol. Struct. 1284 (2023) 135362).</p> <p> </p> <p>2226587_P21_checkcif</p> <p>(Checkcif data on structural solution of zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate (CCDC 2226587) as reported to M. Lutz, J. Mol. Struct. 1284 (2023) 135362.)</p> <p> </p> <p>2226587_P21-n.cif</p> <p>(<em>Crystallographic</em> information <em>file of </em>zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate resolved into P21/n space group by the author of the current contribution.)</p> <p> </p> <p>2226587_P21-n_res.txt</p> <p>(SHELX res file <em>of </em>zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate resolved into P21/n space group by the author of the current contribution; There remains unresolved: Q1 1 0.4226 0.5026 0.4999 11.00000 0.05 8.23.)</p> <p> </p> <p>2226587_P21-n_lst.txt</p> <p>(SHELX lst file <em>of </em>zinc(II) bis((1R,2R)-1,2-diaminocyclohexane) dinitrate resolved into P21/n space group by the author of the current contribution.)</p> <p> </p>
FIGURE 8. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 8. Hyalella cuyana n. sp. (photograph), female paratype (FML-CRUST 01284), embryos in brood pouch.
FIGURE 9. A in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 9. A Photographs and Google Earth satellite image of sampling sites (s) at the Calingasta River. Type locality of Hyalella cuyana n. sp. on the year 2014 B Photographs of Calingasta River in the vicinity of the sampling site taken in 2015.
FIGURE 5. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 5. Hyalella cuyana n. sp., male holotype (FML-CRUST 01282) and female paratype (FML-CRUST 01284). A male gnathopod 1, arrows indicate enlargement of the palmar angle B male gnathopod 2 C female gnathopod 2, arrows indicate curled setae of oostegites. Scale bars: 0.1mm.
FIGURE 2 in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 2. Habitus (photograph) of Hyalella cuyana n. sp. A female paratype (FML-CRUST 01284) B male holotype (FMLCRUST 01282).
FIGURE 7. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 7. Hyalella cuyana n. sp., male holotype (FML-CRUST 01282). A pleopod 3 B uropod 1 C uropod 2 D uropod 3 E telson of male paratype F telson lateral view. Scale bars: 0.1mm.
FIGURE 6. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 6. Hyalella cuyana n. sp., male holotype (FML-CRUST 01282). A pereiopod 3 B pereiopod 4 C pereiopod 5 D pereiopod 6 E pereiopod 7.
FIGURE 1 in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 1. Map showing distribution of type locality of Hyalella cuyana n. sp. and records of Cuyojanira riojana, Cuyojanira ischicuca, Cuyojanira sp. (Isopoda), Parastygocaris andina (Anaspidacea), Hyalella rionegrina (Amphipoda) in Argentina within the biogeographic scheme of Arana et al. (2017).
FIGURE 11 in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 11. Habitus (photograph) Parastygocaris andina (FML-CRUST 01292) (Anaspidacea, Stygocarididae).
FIGURE 4. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 4. Hyalella cuyana n. sp., male holotype (FML-CRUST 01282). A left maxilliped B labrum C lower lip D left mandible E right mandible F internal lateral view of maxilla 1 G maxilla 1 H maxilla 2. Scale bars: 0.1 mm.
FIGURE 3. Hyalella cuyana n in South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina
FIGURE 3. Hyalella cuyana n. sp., male holotype (FML-CRUST 01282). A paratype male (FML-CRUST 01283), habitus lateral view B Epimeral plates C antenna 1 D antenna 2
FIG. 5 in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 5. Female (BUB1227) mitotic karyotype constructed by pairing the homologous chromosomes together and arranged in their decreasing order. The lone supernumerary chromosome (designated as B) is placed at the end of the karyotype. Scale bar: 10 lm.
FIG. 2 in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 2. Somatic male (BUB1202) metaphase karyotype with the karyotypic formula 2n ¼ 42þ1B and FN ¼ 62. The lone B chromosome is the darkest in the karyotype and is placed at the end of the karyotype. Scale bar: 10 lm.
FIG. 6. C in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 6. C-banded somatic metaphase complement. The darkest chromosome (arrowhead) in the complement corresponds to the B chromosome. Scale bar: 10 lm.
FIG. 1 in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 1. Mitotic male (BUB1202) metaphase complement obtained from intestinal epithelial cells depicting a diploid number (2n) of 42 chromosomes along with a B (arrow) chromosome. Scale bar: 10 lm.
FIG. 3 in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 3. Male (BUB1202) meiotic diplotene karyotype with 21 bivalents and a B chromosome. Scale bar: 10 lm.
FIG. 4 in First Report of B Chromosomes in Caecilians (Amphibia: Gymnophiona)
FIG. 4. Female (BUB1227) somatic metaphase chromosomal complement prepared from liver cells with 2n ¼ 42 and a B chromosome (indicated by arrow). Scale bar: 10 lm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.