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4,144 results for “ITS barcode”
CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing [snATAC]
GEO Series GSE153115. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Light-Seq: Light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencing
GEO Series GSE208650. Homo sapiens; Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Slide-tags: scalable, single-nucleus barcoding for multi-modal spatial genomics
GEO Series GSE244355. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [chemo barcode-seq]
GEO Series GSE186304. Mus musculus. 66 samples. Type: Other.
Multi-functional barcoding enables high resolution study of clonal dynamics
GEO Series GSE151431. Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Digital counting of nucleic acid molecules using random base molecular barcodes
GEO Series GSE94895. synthetic construct. 2 samples. Type: Other.
Multi-functional barcoding enables high resolution study of clonal dynamics [multiplexed HG3 ClonMapper recalls]
GEO Series GSE171833. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Barcode decay Lineage Tracing, BdLT-Seq, unravels lineage-linked transcriptome plasticity [scRNAseq_BdLTseq_HA1ER_F12_clone_3]
GEO Series GSE223489. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics
GEO Series GSE304762. Mus musculus. 2 samples. Type: Other.
CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing [mixed Sample of cell lines and organisms]
GEO Series GSE153113. Homo sapiens; Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Figure 1 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figure 1 Coelostoma orbiculare (Fabricius), habitus, L. Borowiec. Scale bar: 1.0 mm.
Figure 29 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figure 29 Attagenus smirnovi Zhantiev, habitus, L. Borowiec A male B female. Scale bar: 1.0 mm.
Figure 43 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figure 43 Lythraria salicariae (Paykull), habitus, L. Borowiec A male B female. Scale bar: 1.0 mm.
DNA barcode trnH-psbA is a promising candidate for efficient identification of forage legumes and grasses
<p><strong>Objective</strong></p> <p>Grasslands are widespread ecosystems that fulfil many functions. Plant species richness (PSR) is known to have beneficial effects on such functions and monitoring PSR is crucial for tracking the effects of land use and agricultural management on these ecosystems. Unfortunately, traditional morphology-based methods are labor-intensive and cannot be adapted for high-throughput assessments.</p> <p>DNA barcoding could aid increasing the throughput of PSR assessments in grasslands. In this proof-of-concept work, we aimed at determining which of three plant DNA barcodes (<em>rbcLa</em>, <em>matK</em> and <em>trnH-psbA</em>) best discriminates 16 key grass and legume species common in temperate sub-alpine grasslands.</p> <p><strong>Results</strong></p> <p>Barcode <em>trnH-psbA</em> had a 100% correct assignment rate (CAR) in the five analyzed legumes, followed by <em>rbcLa </em>(93.3%) and <em>matK</em> (55.6%). Barcode <em>trnH-psbA</em> had a 100% CAR in the grasses <em>Cynosurus cristatus</em>, <em>Dactylis glomerata</em> and <em>Trisetum flavescens</em>. However, the closely related <em>Festuca, Lolium </em>and <em>Poa</em> species were not always correctly identified, which led to an overall CAR in grasses of 66.7 %, 50.0% and 46.4% for<em> trnH-psbA</em>, <em>matK</em> and <em>rbcLa</em>, respectively. Barcode <em>trnH-psbA</em> is thus the most promising candidate for PSR assessments in permanent grasslands and could greatly support plant biodiversity monitoring on a larger scale.</p> <p><strong>Content of data file</strong></p> <p>This data file contains all raw data obtained during the study. The full information on the project can be found on the BOLD database (<a href="http://www.boldsystems.org/index.php/Public_SearchTerms">http://www.boldsystems.org/index.php/Public_SearchTerms</a>) using the search term SWFRG</p>
Figure 1 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx clisteri, a new spider riffle beetle species from Borneo, redescription of A. sarawacensis Jäch including a description of the larva and new distribution data for A. procerus Jäch using DNA barcodes (Coleoptera, Elmidae). ZooKeys 912: 25-64. https://doi.org/10.3897/zookeys.912.47796
Figure 1 Results of DNA COI analyses, maximum likelihood tree.
Figure 16 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx clisteri, a new spider riffle beetle species from Borneo, redescription of A. sarawacensis Jäch including a description of the larva and new distribution data for A. procerus Jäch using DNA barcodes (Coleoptera, Elmidae). ZooKeys 912: 25-64. https://doi.org/10.3897/zookeys.912.47796
Figure 16 Ancyronyx sarawacensis, holotype: A aedeagus, ventral view B same, lateral view.
Figure 2 from: Espinoza-Donoso S, Bobadilla D, Huanca-Mamani W, Vargas-Ortiz M, Vargas HA (2020) A new species of Ithome Chambers (Lepidoptera, Cosmopterigidae, Chrysopeleiinae) from the Atacama Desert revealed by morphology and DNA barcodes. ZooKeys 912: 125-138. https://doi.org/10.3897/zookeys.912.47562
Figure 2 Holotype of Ithome tamarugensis Vargas sp. nov. in dorsal view. Scale bar: 1 mm.
Figure 3 from: Huemer P, Karsholt O, Aarvik L, Berggren K, Bidzilya O, Junnilainen J, Landry J-F, Mutanen M, Nupponen K, Segerer A, Šumpich J, Wieser C, Wiesmair B, Hebert PDN (2020) DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity. ZooKeys 921: 141-157. https://doi.org/10.3897/zookeys.921.49199
Figure 3 Periods of descriptions of European Gelechiidae.
Appendix 8 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Appendix 8. PC loadings of the PCA in Fig. 9. Most important loadings indicated in bold.
Appendix 6 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Appendix 6. PC loadings of the PCA in Fig. 7. Most important loadings indicated in bold.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.