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Supplementary material 2 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure S2
Figure 3 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 3 Maximum Likelihood phylogeny of the concatenated analysis of ITS, LSU, Btub and rpb2 for the Podosporaceae, with an emphasis on the clades B and C. Type strains are indicated with a bold T and that of the focal species Podospora fimiseda is highlighted with a coloured box. Bootstrap support values are depicted next to their respective branches, but values corresponding to nearly identical sequences are removed for clarity. Branches are proportional to the scale bar (nucleotide substitutions per site).
Supplementary material 1 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure S1
Figure 5 from: Quintero-Gutierrez EJ, Sandmann D, Cómbita-Heredia O, Klarner B, Widyastuti R, Scheu S (2020) Review of the mite genus Krantzolaspina Datta & Bhattacharjee (Mesostigmata, Parholaspididae) with re-description of K. angustatus comb. nov. (Ishikawa) from Indonesia. ZooKeys 997: 47-68. https://doi.org/10.3897/zookeys.997.54262
Figure 5 Krantzolaspina angustatus comb. nov., adult female. Palp, note the ventral spine-like process in palptrochanter.
Figure 4 from: Quintero-Gutierrez EJ, Sandmann D, Cómbita-Heredia O, Klarner B, Widyastuti R, Scheu S (2020) Review of the mite genus Krantzolaspina Datta & Bhattacharjee (Mesostigmata, Parholaspididae) with re-description of K. angustatus comb. nov. (Ishikawa) from Indonesia. ZooKeys 997: 47-68. https://doi.org/10.3897/zookeys.997.54262
Figure 4 Krantzolaspina angustatus comb. nov., adult female, Gnathosomal structures. Holotype (Left); Indutolaelaps jiroftensis syn. nov. (Middle), photos by Raphael Castilho; New material from Indonesia (Right). A–C Subcapitulum D–F Epistome G–I Chelicera J–L Palp trochanter with a ventral spine-like process.
Figure 3 from: Quintero-Gutierrez EJ, Sandmann D, Cómbita-Heredia O, Klarner B, Widyastuti R, Scheu S (2020) Review of the mite genus Krantzolaspina Datta & Bhattacharjee (Mesostigmata, Parholaspididae) with re-description of K. angustatus comb. nov. (Ishikawa) from Indonesia. ZooKeys 997: 47-68. https://doi.org/10.3897/zookeys.997.54262
Figure 3 Krantzolaspina angustatus comb. nov., adult female. Ventral idiosoma showing the sternometasternal, genitiventrianal and parapodal shield. A Holotype of Krantzolaspina angustatusB Paratype of Indutolaelaps jiroftensis syn. nov., photos by Raphael Castilho C New material from Indonesia.
Figure 6 from: Quintero-Gutierrez EJ, Sandmann D, Cómbita-Heredia O, Klarner B, Widyastuti R, Scheu S (2020) Review of the mite genus Krantzolaspina Datta & Bhattacharjee (Mesostigmata, Parholaspididae) with re-description of K. angustatus comb. nov. (Ishikawa) from Indonesia. ZooKeys 997: 47-68. https://doi.org/10.3897/zookeys.997.54262
Figure 6 Krantzolaspina angustatus comb. nov., adult female. A–D Legs I–IV, respectively. Coxae I–IV in the Fig. 2.
Figure 2 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 2 Maximum Likelihood phylogeny of the concatenated analysis of ITS, LSU, Btub and rpb2 for the Podosporaceae, with an emphasis on Clade A. Type strains are indicated with a bold T and those of the focal species Podospora anserina and Triangularia bambusae are highlighted with coloured boxes. Bootstrap support values are depicted next to their respective branches, but values corresponding to nearly identical sequences are removed for clarity. Branches are proportional to the scale bar (nucleotide substitutions per site).
Supplementary material 4 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Table S1
Figure 4 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 4 Phylogenetic signal in the available molecular markers for the relationship between clade A and either clade B or C of the PodosporaceaeA differences in the gene-wise log-likelihood scores (ΔGLS) for each marker, where 0 implies equal support for either of the two alternative sister relationships (A and B or A and C), positive values mean higher support for A and B and negative values higher support for A and C B proportion of sites that support each of the two sister relationships within each marker.
Supplementary material 5 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Table S2
Figure 1 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 1 Schematic phylogenetic relationships of the main clades within the Podosporaceae based on Maximum Likelihood analyses of concatenated markers. The three main clades (A, B and C) are strongly supported (bootstrap support values next to relevant branches), but their particular relationship changes depending on the presence of the rpb2 marker. Branches proportional to the scale bar (nucleotide substitutions per site).
Supplementary material 9 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S3
Supplementary material 10 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S4
Supplementary material 11 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S5
Supplementary material 8 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S2
Supplementary material 12 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S6
Supplementary material 7 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S1
Supplementary material 3 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 3: Predator assignment
Supplementary material 6 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.