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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (ATAC-seq)
GEO Series GSE116854. Macaca mulatta; Homo sapiens; Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-seq to measure binding of NIPBL/MAU2, RAD21, and CTCF in mouse embryonic stem cells and neural progenitor cells
GEO Series GSE278338. Mus musculus. 50 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Distinct properties and functions of CTCF revealed by a rapidly inducible degron system
GEO Series GSE150418. Mus musculus. 39 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters
GEO Series GSE190991. Mus musculus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Drosophila architectural protein CTCF is not essential for fly survival and is able to function independently of CP190
GEO Series GSE175402. Drosophila melanogaster. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP seq of CTCF and p53 in MCF10A before and after H-RAS transformation [ChIP-seq]
GEO Series GSE140252. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state [human_Brd9_CTCF-ChIP-seq]
GEO Series GSE236328. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP)
GEO Series GSE185883. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The Hippo kinase LATS1 controls CTCF chromatin occupancy and the hormonal response of three-dimensionally grown breast cancer cells
GEO Series GSE247777. Homo sapiens. 73 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [4C-seq_set2]
GEO Series GSE190988. Mus musculus. 17 samples. Type: Other.
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
GEO Series GSE66900. Danio rerio; Strongylocentrotus purpuratus; Mus musculus. 63 samples. Type: Other.
Nucleosome dynamics specifies genome-wide binding of the male germ cell gene regulator CTCFL and of CTCF [MoGene-1_0 Expression]
GEO Series GSE34092. Mus musculus. 2 samples. Type: Expression profiling by array.
Tcf1 and Lef1 cooperate with CTCF and Stat5 to sustain CD8+ T cell homeostasis [ChIP-Seq]
GEO Series GSE192758. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF acetylation at lysine 20 is required for early cardiac mesoderm differentiation from embryonic stem cells [BL-Hi-C]
GEO Series GSE181700. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of CTCF-mediated chromatin interactions at the BCL11A locus in HUDEP-2 cells by Micro-Capture-C (MCC)
GEO Series GSE292671. Homo sapiens. 2 samples. Type: Other.
p63 cooperates with CTCF to modulate chromatin accessibility and architecture in skin keratinocytes
GEO Series GSE123711. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tcf1-CTCF cooperativity shapes genomic architecture to promote CD8+ T cell homeostasis
GEO Series GSE179775. Mus musculus. 49 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF functions as a chromatin insulator in the HoxA cluster during neurogenesis [RNA-Seq]
GEO Series GSE60226. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [CUT&Run]
GEO Series GSE269221. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [ATAC]
GEO Series GSE239645. human gammaherpesvirus 4. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.