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373
datasets available to search
ShareScore release 0.9.0
Dataset results
373 results for “Chloroplast”
Genetic Suppression of Plant Development and Chloroplast Biogenesis by SCO3 and PhyB Pathways
GEO Series GSE67168. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Chloroplast activity provides invitro regeneration capability in contrasting cultivars
GEO Series GSE206271. Hordeum vulgare. 4 samples. Type: Expression profiling by high throughput sequencing.
HOT3/eIF5B1 confers Kozak motif-dependent translational control of photosynthesis-associated nuclear genes for chloroplast biogenesis
GEO Series GSE212856. Arabidopsis thaliana. 12 samples. Type: Other.
A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants [RNA-seq]
GEO Series GSE225472. Oryza sativa. 8 samples. Type: Expression profiling by high throughput sequencing.
A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants [ChIP-seq]
GEO Series GSE225476. Oryza sativa. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Functional characterization of genes/proteins differentially expressed in phototrophic and heterotrophic tissues in Arabidopsis thaliana mutants lacking chloroplastic and cytosolic fructose-1,6-bispho
GEO Series GSE32522. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
GEO Series GSE5726. Arabidopsis thaliana. 6 samples. Type: Expression profiling by array.
Biogenic signals from plastids and their role in chloroplast development
<p><strong>Chloroplast Defective Mutants</strong></p> <p>The mutant collection was done starting from the Myouga et al (2013) chloroplast database. All the genes in their list were confirmed or removed, depending on the updated and available information in literature.<br> Genes not present in the Myouga database were taken from literature, based on the tables from the two publications from Tadini et al (2020). Additional genes were searched in the literature.</p> <p> </p> <p>Table structure.</p> <p>Detailed information for the mutant characterisation were taken from the main plant databases (TAIR and UniProt) and the corresponding literature.<br> The table is structured in a way to give an insight into the molecular function of the gene and a description of the mutant phenotype (for both if information was available).<br> The worksheet "Chloroplast Defective Mutants" contains all the mutants sorted by locus.<br> The worksheet "Mutants included in Fig.1" depicts all mutants with impairment in essential processes for chloroplast biogenesis and their phenotype is schematically represented with coloured squares in Figure 1.<br> </p> <p>The last worksheet contains the pie charts, in which the impacts of the main biological functions on the phenotype are visualized.</p> <p> </p> <p>References:</p> <p>-Myouga F, Akiyama K, Tomonaga Y, Kato A, Sato Y, Kobayashi M, Nagata N, Sakurai T, Shinozaki K. The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins. Plant Cell Physiol (2013) http://di.org/0.1093/pcp/pcs171<br> -Tadini L, Jeran N and Pesaresi P, GUN1 and Plastid RNA Metabolism: Learning from Genetics. Cells (2020), 9(10), 2307; https://doi.org/10.3390/cells9102307<br> -Tadini L, Jeran N, Peracchio C, Masiero S, Colombo M and Pesaresi P, The plastid transcription machinery and its coordination with the expression of nuclear genome: Plastid-Encoded Polymerase, Nuclear-Encoded Polymerase and the Genomes Uncoupled 1-mediated retrograde communication. Phil. Trans. R. Soc. (2020) http://doi.org/10.1098/rstb.2019.0399</p>
CHLORELLA, chloroplast-targeted long noncoding RNA, mediates the chloroplast functional transition during leaf lifespan through anterograde signaling pathway
GEO Series GSE255867. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
GEO Series GSE6169. Arabidopsis thaliana. 10 samples. Type: Expression profiling by array.
A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants
GEO Series GSE225478. Oryza sativa. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Nuclear gene expression in response to chloroplast division inhibition
GEO Series GSE20228. Arabidopsis thaliana. 6 samples. Type: Expression profiling by array.
Annotated Chloroplast Genome and Annotated Mitochondrial Genome
<p>Annotated chloroplast genome and annotated mitochondrial genome</p>
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Allen Brain Atlas
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.