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1,351 results for “Intermediates”
Alphafold2_ab_initio iterative predictions for folding intermediate identification
<div>PDB ids start from 5 and 7.</div> <div> <div> <p> </p> </div> </div>
Alphafold2_ab_initio iterative predictions for folding intermediate identification
<p><span>Iterative structure predictions for protein PDB ids starts from 2.</span></p>
Bioenergetics parameters and concentrations of metabolic intermediates in the whole body of Mytilus edulis exposed to different combinations of nZnO and oxygen regime
<p>Coastal ecosystems face increasing threats from anthropogenic pollution and environmental stressors like hypoxia and nanoparticle exposure. The Baltic Sea exemplifies these challenges due to nutrient pollution and hypoxia. We investigated the combined effects of zinc oxide nanoparticles (nZnO) and hypoxia on bioenergetics and metabolite homeostasis of the blue mussel <em>Mytilus edulis</em> from the Baltic Sea. Mussels were first exposed to environmentally relevant concentrations of nZnO (100 µg Zn L<sup>-1</sup>) and subsequently subjected to short-term (24 h) or long-term (7 d) hypoxia (<0.1% air saturation) followed by recovery periods (1 h and 24 h). The data set provides data on bioenergetics parameters and concentrations of metabolic intermediates in the whole body of mussels exposed to different combinations of nZnO and oxygen regime (C- control, H1 - 1 day of hypixia, H7 - 7 days of hypoxia, R1 - 1 h of reoxygenation, R24- 24 h of reoxygenation)</p>
Dataset related to "An experimental and computational study of the unimolecular-decay reaction of diethyl-substituted Criegee Intermediate (C2H5)2COO"
<p>This dataset was created in a study with the following title "An experimental and computational study of the unimolecular-decay reaction of diethyl-substituted Criegee Intermediate (C2H5)2COO"</p>
The SOFIA Massive (SOMA) Star Formation Q-band Follow-up. I. Carbon-Chain Chemistry of Intermediate-Mass Protostars
<p>These figures show spectra obtained by the Yebes 40m telescope toward eleven intermediate-mass protostars. Black lines indicate the observational spectra and red curves indicate the best-fitting models with the MCMC method. Blue curves show the results of the Gaussian fitting.</p>
Data from: Population genomics of divergence among extreme and intermediate color forms in a polymorphic insect
Geographic variation in insect coloration is among the most intriguing examples of rapid phenotypic evolution and provides opportunities to study mechanisms of phenotypic change and diversification in closely related lineages. The bumble bee Bombus bifarius comprises two geographically disparate color groups characterized by red-banded and black-banded abdominal pigmentation, but with a range of spatially and phenotypically intermediate populations across western North America. Microsatellite analyses have revealed that B. bifarius in the USA are structured into two major groups concordant with geography and color pattern, but also suggest ongoing gene flow among regional populations. In this study, we better resolve the relationships among major color groups to better understand evolutionary mechanisms promoting and maintaining such polymorphism. We analyze >90,000 and >25,000 single-nucleotide polymorphisms derived from transcriptome (RNAseq) and double digest restriction site associated DNA sequencing (ddRAD), respectively, in representative samples from spatial and color pattern extremes in B. bifarius as well as phenotypic and geographic intermediates. Both ddRAD and RNAseq data illustrate substantial genome-wide differentiation of the red-banded (eastern) color form from both black-banded (western) and intermediate (central) phenotypes and negligible differentiation among the latter populations, with no obvious admixture among bees from the two major lineages. Results thus indicate much stronger background differentiation among B. bifarius lineages than expected, highlighting potential challenges for revealing loci underlying color polymorphism from population genetic data alone. These findings will have significance for resolving taxonomic confusion in this species and in future efforts to investigate color-pattern evolution in B. bifarius and other polymorphic bumble bee species.
FIGURE 3. Ipomoea mirabilis. A. Stem. B. Outer sepal. C. Intermediates sepals. D. Inner sepals. E. Stamen. F. Gynoecium. G. Capsule. H in Three new species of Convolvulaceae Juss. from South America
FIGURE 3. Ipomoea mirabilis. A. Stem. B. Outer sepal. C. Intermediates sepals. D. Inner sepals. E. Stamen. F. Gynoecium. G. Capsule. H. Seed (A—H: P.P.A. Ferreira & J. Durigon 702).
FIGURE. Euphorbia chamaesyce: A) individual (Tuscany, Siena province, Chiusi, arable fields near the lake), B) individual (Tuscany, Arezzo province, Pieve Santo Stefano, gravel road along shores of Montedoglio Lake), C) detail of cyathium and capsule (hairy form), D) detail of tip and capsules (intermediate hairiness form), E) detail of cyathium and capsule (glabrous form). in Synopsis of Euphorbia section Anisophyllum (Euphorbiaceae) in Italy, with an insight on variation of distribution over time in Tuscany
FIGURE. Euphorbia chamaesyce: A) individual (Tuscany, Siena province, Chiusi, arable fields near the lake), B) individual (Tuscany, Arezzo province, Pieve Santo Stefano, gravel road along shores of Montedoglio Lake), C) detail of cyathium and capsule (hairy form), D) detail of tip and capsules (intermediate hairiness form), E) detail of cyathium and capsule (glabrous form).
Data and code for Seeley and Wordsworth, "Moist convection is most vigorous at intermediate atmospheric humidity"
<p>Data and code for Seeley and Wordsworth, "Moist convection is most vigorous at intermediate atmospheric humidity"</p>
FIGURES 458–463. Form intermediate between Kimminsula taprobanes and K. fasciata. 458 in Review of the Kimminsula-complex (Ephemeroptera, Leptophlebiidae)
FIGURES 458–463. Form intermediate between Kimminsula taprobanes and K. fasciata. 458, male imago; 459, its subimaginal exuviae of mesonotum; 560–462, its fore-, middle and hind legs; 463, its abdomen.
FIGURES 452–457. Form intermediate between Kimminsula taprobanes and K. fasciata. 452 in Review of the Kimminsula-complex (Ephemeroptera, Leptophlebiidae)
FIGURES 452–457. Form intermediate between Kimminsula taprobanes and K. fasciata. 452, last instar female larva just after molt, with cuticle non-pigmented, to show hypodermal coloration; 453–454, fore- and hind wings of imago; 455–457, fore- and hind protoptera of last instar larva.
FIGURES 444–451. Form intermediate between Kimminsula taprobanes and K in Review of the Kimminsula-complex (Ephemeroptera, Leptophlebiidae)
FIGURES 444–451. Form intermediate between Kimminsula taprobanes and K. fasciata, larval exuviae (with the same magnification). 444, head; 445, pronotum and mesonotum; 446–447, left and right mandibles; 448, abdomen; 449–451, fore-, middle and hind legs.
FIGURES 464–467. Form intermediate between Kimminsula taprobanes and K in Review of the Kimminsula-complex (Ephemeroptera, Leptophlebiidae)
FIGURES 464–467. Form intermediate between Kimminsula taprobanes and K. fasciata, tarsus of foreleg of male subimago. 464, its 1st tarsomere; 465, boundary between 1st and 2nd tarsomeres; 466 apex of 3rd tarsomere; 467, 4th tarsomere.
FIGURES 468–473. Form intermediate between Kimminsula taprobanes and K. fasciata, male genitalia. 468–471 in Review of the Kimminsula-complex (Ephemeroptera, Leptophlebiidae)
FIGURES 468–473. Form intermediate between Kimminsula taprobanes and K. fasciata, male genitalia. 468–471, penis with gonads (471, ventral view; 472, dorsal view; gonoducts shown by dotted line); 472, styliger with gonostyli; 473, their subimaginal exuviae. Abbreviations: gd, gonoduct; gs1–gs4, 1st–4th segments of gonostylus.
Intermediate data belonging to "Process-based climate change assessment for European winds using EURO-CORDEX and global models"
<p>This dataset contains the intermediate results of Wohland (2022) that are needed to redo the analysis und produce the figures. It allows to bypass those steps that rely on access to the supercomputers at the German Climate Computing Centre (DKRZ). When using this data in academic work, please reference</p> <blockquote> <p>Jan Wohland, Process-based climate change assessment for European winds using EURO-CORDEX and global models, Environmental Research Letters (provisionally accepted on 28/11/2022), 2022</p> </blockquote> <p><strong>Using this data to reproduce results</strong></p> <p>The data can be used together with the code provided in https://github.com/jwohland/kliwist_modelchain</p> <p>In the above mentioned github repository, there is a `run_all.py` script that repeats the analysis presented in Wohland (2022). After downloading and extracting this data, you can ignore the steps under "calculations", and begin with "plots".</p> <p><strong>Underlying data</strong></p> <p>The dataset draws on output from the CMIP5, CMIP6 and EURO-CORDEX initiatives. I thank the climate modeling groups for making their data openly available. In particular, I acknowledge the World Climate Research Programme’s Working Group on Regional Climate, and the Working Group on Coupled Modelling, former coordinating body of CORDEX and responsible panel for CMIP5. I also acknowledge the Earth System Grid Federation infrastructure an international effort led by the U.S. Department of Energy’s Program for Climate Model Diagnosis and Intercomparison, the European Network for Earth System Modelling and other partners in the Global Organisation for Earth System Science Portals (GO-ESSP). I also acknowledge the World Climate Research Programme, which, through its Working Group on Coupled Modelling, coordinated and promoted CMIP5 and CMIP6.</p> <p><strong>Funding</strong></p> <p>This work is part of the project "The influence of climate change on wind energy site assessments – KliWiSt" funded by the German Federal Ministry for Economic Affairs and Climate Action (BMWK).</p> <p><strong>References to raw data journal articles</strong></p> <blockquote> <p>Jacob, D. <em>et al.</em> EURO-CORDEX: new high-resolution climate change projections for European impact research. <em>Reg Environ Change</em> <strong>14</strong>, 563–578 (2014).</p> </blockquote> <blockquote> <p>Taylor, K. E., Stouffer, R. J. & Meehl, G. A. An Overview of CMIP5 and the Experiment Design. <em>Bull. Amer. Meteor. Soc.</em> <strong>93</strong>, 485–498 (2012).</p> </blockquote> <blockquote> <p>Hurtt, G. C. <em>et al.</em> Harmonization of land-use scenarios for the period 1500–2100: 600 years of global gridded annual land-use transitions, wood harvest, and resulting secondary lands. <em>Climatic Change</em> <strong>109</strong>, 117–161 (2011).</p> </blockquote>
Intermediate-Mass & Supermassive Black Hole Feedback in Cosmological Hydrodynamical Simulations
<p>Intermediate-Mass Black Holes (IMBHs: with mass between 100 to 10^6 Msun) historically comprise of an elusive population in the Universe compared to the widely observed Stellar-Mass and Supermassive Black Holes. An increasing fraction of low-mass galaxies are observed to host IMBHs at their centers; some of which show signatures of activity in the form of low-luminosity AGN. In this context, a pertinent theory is that there are dormant IMBHs at the centers of Dwarf Galaxies, which we explore by performing small-volume Cosmological Hydrodynamical Simulations. The IMBHs are expected to be more prevalent in low-mass halos. We also perform medium-volume cosmological simulations to explore feedback from supermassive BHs. Our simulations employ a modified version of the SPH code GADGET-3, and include baryonic feedback models: radiative cooling, star formation, chemical enrichment, stellar evolution, supernova feedback, AGN accretion and AGN kinetic feedback. We investigate the growth of central IMBHs and SMBHs in galaxies employing the different volume simulations, as well as the resulting BH feedback. We quantify the impact of central massive BHs on their host galaxies; especially the effects on star formation and galaxy gas properties.</p>
Lightcurves, spectra and model-lightcurves of Luminous Red Novae and Intermediate Luminosity Red Transients by the Zwicky Transient Facility
<p>Data release of the objects presented in the paper "Volumetric Rates of Luminous Red Novae and Intermediate Luminosity Red Transients with the Zwicky Transient Facility". This includes multiband optical-near-IR (NIR) lightcurves, optical and NIR spectra of LRNe, ILRTs and possible LBV outbursts presented in the paper. The release also includes Gaussian-Process lightcurve templates of LRNe and ILRTs, that were used to simulate these transients and determine their volumetric rates.</p>
Dataset for Intermediate Infrared Spectroscopy of Pyroxene
<p>Spectra of pyroxene samples used in paper entitled Intermediate Infrared Spectroscopy of Pyroxene: Determination of Ca-Mg-Fe Composition in the 4-8 Micron Wavelength Range</p>
Carbonates and Intermediate-Depth Seismicity: Stable and Unstable Shear in Altered Subducting Plates and Overlying Mantle
<p>Prakash et al (2023) - "Carbonates and Intermediate-Depth Seismicity: Stable and Unstable Shear in Altered Subducting Plates and Overlying Mantle"</p> <p>This repository contains:<br> -data exported from shear heating instability model shown in figures 2, 3, 4, S4, S5, and S6<br> -matlab code used to plot figures </p> <p>For further information, please contact Abhishek Prakash (abhishek.prakash@tamu.edu).</p>
Deglacial temperature and carbonate saturation state variability in the tropical Atlantic at Antarctic Intermediate Water Depths
<p>Data and R script repository for the manuscript "Deglacial temperature and carbonate saturation state variability in the tropical Atlantic at Antarctic Intermediate Water Depths" (Oppo et al., 2023)</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.