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3,484 results for “Plastics”
Data from: Plastic responses of bryozoans to ocean acidification
Phenotypic plasticity has the potential to allow organisms to respond rapidly to global environmental change, but the range and effectiveness of these responses are poorly understood across taxa and growth strategies. Colonial organisms might be particularly resilient to environmental stressors, as organizational modularity and successive asexual generations can allow for distinctively flexible responses in the aggregate form. We performed laboratory experiments to examine the effects of increasing dissolved carbon dioxide (i.e. ocean acidification) on the colonial bryozoan Celleporella cornuta sampled from two source populations within a coastal upwelling region of the northern California coast. Bryozoan colonies were remarkably plastic under these carbon dioxide (CO2) treatments. Colonies raised under high CO2 grew more quickly, investing less in reproduction and producing lighter skeletons when compared to genetically identical clones raised under current atmospheric values. Bryozoans held in high CO2 conditions also changed the Mg/Ca ratio of skeletal walls and increased the expression of organic coverings in new growth, which may serve as protection against acidified water. We also observed strong differences between populations in reproductive investment and organic covering reaction norms, consistent with adaptive responses to persistent spatial variation in local oceanographic conditions. Our results demonstrate that phenotypic plasticity and energetic trade-offs can mediate ecological responses to global environmental change, and highlight the broad range of strategies available to colonial organisms.
Metapopulation dynamics and foraging plasticity in a highly vagile seabird, the southern rockhopper penguin
<p>Population connectivity is driven by individual dispersal potential and modulated by natal philopatry. In seabirds, high vagility facilitates dispersal yet philopatry is also common, with foraging area overlap often correlated with population connectivity. We assess the interplay between these processes by studying past and current connectivity and foraging niche overlap among southern rockhopper penguin colonies of the coast of southern South America using genomic and stable isotope analyses. We found two distinct genetic clusters and detected low admixture between northern and southern colonies. Stable isotope analysis indicated niche variability between colonies, with Malvinas/Falklands colonies encompassing the species entire isotopic foraging niche, while the remaining colonies had smaller, nonoverlapping niches. A recently founded colony in continental Patagonia differed in isotopic niche width and position with Malvinas/Falklands colonies, its genetically identified founder population, suggesting the exploitation of novel foraging areas and/or prey items. Additionally, dispersing individuals found dead across the Patagonian shore in an unusual mortality event were also assigned to the northern cluster, suggesting northern individuals reach southern localities, but do not breed in these colonies. Facilitated by variability in foraging strategies, and especially during unfavorable conditions, the number of dispersing individuals may increase and enhance the probability of founding new colonies. Metapopulation demographic dynamics in seabirds should account for interannual variability in dispersal behavior and pay special attention to extreme climatic events, classically related to negative effects on population trends.</p>
Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity
<p>Rational drug design for G protein-coupled receptors (GPCRs) is limited by the small number of available atomic resolution structures. We assessed the use of homology modeling to predict the structures of two therapeutically relevant GPCRs and strategies to improve the performance of virtual screening against modeled binding sites. Homology models of the D<sub>2</sub> dopamine (D<sub>2</sub>R) and serotonin 5-HT<sub>2A</sub> receptors (5-HT<sub>2A</sub>R) were generated based on crystal structures of 16 different GPCRs. Comparison of the homology models to D<sub>2</sub>R and 5-HT<sub>2A</sub>R crystal structures showed that accurate predictions could be obtained, but not necessarily using the most closely related template. Assessment of virtual screening performance was based on molecular docking of ligands and decoys. The results demonstrated that several templates and multiple models based on each of these must be evaluated to identify the optimal binding site structure. Models based on aminergic GPCRs displayed ligand enrichment and there was a trend toward improved virtual screening performance with increasing binding site accuracy. The best models even displayed ligand enrichment better than that of the D<sub>2</sub>R and 5-HT<sub>2A</sub>R crystal structures. Methods to consider binding site plasticity were explored to further improve predictions. Molecular docking to ensembles of structures did not outperform the best individual binding site models, but could increase the diversity of hits from virtual screens and be advantageous for GPCR targets with few known ligands. Molecular dynamics refinement resulted in moderate improvements of structural accuracy and the virtual screening performance of snapshots was either comparable to or worse than that of the raw homology models. These results provide guidelines for successful application of structure-based ligand discovery using GPCR homology models.</p>
Data from: Plasticity of plant defense and its evolutionary implications in wild populations of Boechera stricta
Phenotypic plasticity is thought to impact evolutionary trajectories by shifting trait values in a direction that is either favored by natural selection ("adaptive plasticity") or disfavored ("nonadaptive" plasticity). However, it is unclear how commonly each of these types of plasticity occurs in natural populations. To answer this question, we measured glucosinolate defensive chemistry and reproductive fitness in over 1,500 individuals of the wild perennial mustard Boechera stricta, planted in four common gardens across central Idaho, USA. Glucosinolate profiles—including total glucosinolate concentration as well as the relative abundances and overall diversity of different compounds—were strongly plastic both among habitats and within habitats. Patterns of glucosinolate plasticity varied greatly among genotypes. Plasticity among sites was predicted to affect fitness in 27.1% of cases; more often than expected by chance, glucosinolate plasticity increased rather than decreased relative fitness. In contrast, we found no evidence for within-habitat selection on glucosinolate reaction norm slopes (i.e., plasticity along a continuous environmental gradient). Together, our results indicate that glucosinolate plasticity may improve the ability of B. stricta populations to persist after migration to new habitats.
Data from: Phenotypic plasticity facilitates initial colonization of a novel environment
Phenotypic plasticity can allow organisms to respond to environmental changes by producing better matching phenotypes without any genetic change. Because of this, plasticity is predicted to be a major mechanism by which a population can survive the initial stage of colonizing a novel environment. We tested this prediction by challenging wild Drosophila melanogaster with increasingly extreme larval environments and then examining expression of alcohol dehydrogenase (ADH) and its relationship to larval survival in the first generation of encountering a novel environment. We found that most families responded in the adaptive direction of increased ADH activity in higher alcohol environments and families with higher plasticity were also more likely to survive in the highest alcohol environment. Thus, plasticity of ADH activity was positively selected in the most extreme environment and was a key trait influencing fitness. Furthermore, there was significant heritability of ADH plasticity which can allow plasticity to evolve in subsequent generations after initial colonization. The adaptive value of plasticity, however, was only evident in the most extreme environment and had little impact on fitness in less extreme environments. The results provide one of the first direct test of the adaptive role of phenotypic plasticity in colonizing a novel environment.
Data from: Local adaptation for enhanced salt tolerance reduces non-adaptive plasticity caused by osmotic stress
Organisms often respond to environmental change via phenotypic plasticity, where an individual modulates its phenotype according to the environment. Highly variable or changing environments can exceed physiological limits and generate maladapted plastic phenotypes, which is termed non-adaptive plasticity. In some cases, selection may reduce the negative or disruptive impacts of environmental stress and produce locally adapted populations. Salt is an increasingly prevalent contaminant of freshwater systems and can induce non-adaptive plastic phenotypes for freshwater organisms like amphibians. Hyla cinerea is a frog species with populations inhabiting brackish, coastal habitats, so we use this species to test whether coastal populations are locally adapted to tolerate saltwater by determining how salt exposure during the embryonic and larval stages alters mortality and plastic developmental and metamorphic phenotypes of coastal and inland populations. Coastal frogs have higher survival, faster growth rates, and metamorphose sooner than inland frogs across salinities. Coastal frogs also metamorphose smaller (likely a consequence of earlier metamorphosis) yet maintain constant size, while higher salinities reduce metamorphic size for inland frogs. Coastal frogs evolved to minimize non-adaptive and disruptive impacts of saltwater during larval development and accelerate the larval period to reduce time spent in a stressful environment.
Genetic variation and phenotypic plasticity in circadian rhythms of an armed beetle, Gnatocerus cornutus (Tenebrionidae)
<p>Circadian rhythms, their free-running periods and strength of the rhythm are often used as indicators of biological clocks, and there is evidence that the free-running periods of circadian rhythm are not affected by environmental factors like temperature. However, there are few studies of environmental effects on the power of rhythms and it is not clear if temperature compensation is universal. Additionally, genetic variation and phenotypic plasticity in biological clocks are important for understanding the evolution of biological rhythm, but genetic and plastic effects are rarely investigated. Here, we used 18 isofemale lines (genotypes) of <i>Gnatocerus cornutus</i> to assess rhythms of locomotor activity, while also testing for temperature effects. We found that total activity and power of circadian rhythm were affected by interactions between sex and genotype or sex, genotype and temperature, so that while males tended to be more active and showed greater increases in activity, this effect varied across both genotypes and temperatures. The period of activity only varied by genotype and was thus independent of temperature. The complicated genotype-sex-environment interactions we recorded stress the importance of investigating circadian activity in more integrated ways.</p>
Data from: Colour plasticity alters thermoregulatory behaviour in Battus philenor caterpillars by modifying the cue received
Behaviour is an important way for animals to rapidly respond to changes in their current environment; however, over extended periods animals can also respond to environmental change via slower, developmental plasticity in other traits. This developmental plasticity could itself alter the animal's behaviour in two ways: it could change the state of the aspect of the animal's current environment that induces the behaviour (the cue), or it could change the physiology underlying production of that behaviour (the behavioural reaction norm). We tested these alternatives for two responses to temperature, colour plasticity and refuge-seeking behaviour, in pipevine swallowtail, Battus philenor, caterpillars. Prior research found that black caterpillars seek thermal refuges at lower ambient temperatures than red caterpillars in the field. Here, we found that the effect of colour on behaviour in the laboratory depended on how we heated the caterpillars. When warmed by radiant heat, black caterpillars sought refuge sooner than red caterpillars, as occurs in nature. In contrast, when warmed by conduction of heat, black caterpillars no longer sought refuges sooner than red caterpillars. Both colour morphs began seeking refuges at the same body temperature in both experiments, and the sensitivity of their metabolic rate to temperature was also the same. Taken together, our findings indicate that while colour does change the cue for refuge seeking, it does not change the behaviour's reaction norm. Similar cue-mediated interactions may often occur for thermoregulatory behaviour in other species.
Data from: Plasticity of thermal tolerance and its relationship with growth rate in juvenile mussels (Mytilus californianus)
Complex life cycles characterized by uncertainty at transitions between larval/juvenile and adult environments could favor irreversible physiological plasticity at such transitions. To assess whether thermal tolerance of intertidal mussels (Mytilus californianus) adjusts to post-settlement environmental conditions, we collected juveniles from their thermally buffered microhabitat from high and low-shore locations at cool (wave-exposed) and warm (wave-protected) sites. Juveniles were transplanted to unsheltered cages at the two low sites or placed in a common garden. Juveniles transplanted to the warm site for one month in summer had higher thermal tolerance, regardless of origin site. In contrast, common-garden juveniles from all sites had lower tolerance indistinguishable from exposed-site transplants. After six months in the field plus a common garden period, there was a trend for higher thermal tolerance at the protected site, while reduced thermal tolerance at both sites indicated seasonal acclimatization. Thermal tolerance and growth rate were inversely related after one but not six months; protected-site transplants were more tolerant but grew more slowly. In contrast to juveniles, adults from low-shore exposed and protected sites retained differences in thermal tolerance after common garden treatment in summer. Both irreversible and reversible forms of plasticity must be considered in organismal responses to changing environments.
Data from: Correlational selection on personality and social plasticity: morphology and social context determine behavioural effects on mating success
Despite a central line of research aimed at quantifying relationships between mating success and sexually dimorphic traits (e.g., ornaments), individual variation in sexually selected traits often explains only a modest portion of the variation in mating success. Another line of research suggests that a significant portion of the variation in mating success observed in animal populations could be explained by correlational selection, where the fitness advantage of a given trait depends on other components of an individual's phenotype and/or its environment. We tested the hypothesis that interactions between multiple traits within an individual (phenotype dependence) or between an individual's phenotype and its social environment (context dependence) can select for individual differences in behaviour (i.e., personality) and social plasticity. To quantify the importance of phenotype- and context-dependent selection on mating success, we repeatedly measured the behaviour, social environment and mating success of about 300 male stream water striders, Aquarius remigis. Rather than explaining individual differences in long-term mating success, we instead quantified how the combination of a male's phenotype interacted with the immediate social context to explain variation in hour-by-hour mating decisions. We suggest that this analysis captures more of the mechanisms leading to differences in mating success. Males differed consistently in activity, aggressiveness and social plasticity. The mating advantage of these behavioural traits depended on male morphology and varied with the number of rival males in the pool, suggesting mechanisms selecting for consistent differences in behaviour and social plasticity. Accounting for phenotype and context dependence improved the amount of variation in male mating success we explained statistically by 30–274%. Our analysis of the determinants of male mating success provides important insights into the evolutionary forces that shape phenotypic variation. In particular, our results suggest that sexual selection is likely to favour individual differences in behaviour, social plasticity (i.e., individuals adjusting their behaviour), niche preference (i.e., individuals dispersing to particular social conditions) or social niche construction (i.e., individuals modifying the social environment). The true effect of sexual traits can only be understood in interaction with the individual's phenotype and environment.
Plastic Skeleton Practice Dig
Captured on the 11th of May at UWA as part of a student training exercise. 194 photos from an iPhone SE. Reconstructed in Agisoft photoscan standard edition on Low settings alignment, low for meshing and 4096x pixel mosaic for texturing. These are not actual human remains. Source: Objaverse 1.0 / Sketchfab
Determination of ti-6242 α and β slip properties using micro-pillar test and computational crystal plasticity
<p>Data for "Determination of ti-6242 α and β slip properties using micro-pillar test and computational crystal plasticity"<br /> http://dx.doi.org/10.1016/j.jmps.2016.06.007</p> <p><br /> Zhen Zhang, Tea-Sung Jun, T. Benjamin Britton and Fionn P.E. Dunne<br /> Department of Materials, Imperial College London, Prince consort Road, London, SW7 2AZ, UK</p> <p>--</p> <p>This experimental data folder contains 3 subfolders:<br /> (1) Micropillar compression videos<br /> (2) Simulation data</p> <p>(3) Data for Figure 4<br /> (4) Data for Figure 6</p> <p>--</p> <p>The simulation data in (2) is ABAQUS input deck containing an example finite element representation of an alpha-beta titanium micropillar subjected to compression loading. This model was calibrated against the experimental data using the first 60s of the stress relaxation period.</p> <p>--</p> <p>If readers need further information, please feel free to contact: zhen.zhang@imperial.ac.uk</p>
The Canopy Trait Plasticity (CANTRIP) database v1.0.0
<p>This release aligns with the version of the database published in Nature Plants.</p>
Lifespan Data for: Genetic dissection of nutrition-induced plasticity in insulin/insulin-like growth factor signaling and median lifespan in a Drosophila multiparent population
<p>Daily mortality records. Columns are:</p> <p>setDate: date vial was set up</p> <p>flipDate: date flies moved to new food and mortality recorded</p> <p>Age: age in days of flies (from set up date)</p> <p>RIL: DSPR recombinant inbred line ID</p> <p>rilid: alternate id</p> <p>replicate: replicate id</p> <p>riltreat: unique RIL, treatment identifier</p> <p>Dead: # dead</p> <p>Censored: # escaped or inadvertently killed individuals </p> <p>Carried: # dead flies inadvertently moved to fresh food</p>
Plastic Litter Project 2022-2023 - Minimum Detection Fraction Dataset
<p>Sentinel-2 and PlanetScope SuperDove data, with corresponding UAS RGB reference images (where available) used in </p>
Sexual selection buffers the negative consequences of population fragmentation on adaptive plastic responses to increasing temperatures
<p class="MsoNormal"><span>Whether sexual selection facilitates or hampers the ability to plastically respond to novel environments might depend on population structure, via its effects on </span><span>sexual interactions and associated fitness payoffs</span><span>. Using experimentally evolved lines </span><span>of the seed beetle <em>Callosobruchus maculatus,</em> we tested whether individuals evolving under different sexual selection (monogamy vs polygamy) and population spatial structure (metapopulation vs undivided populations) treatments differed in their response across developmental thermal conditions (control, hot or stressful) in a range of fitness and fitness-associated traits. We found that individuals from subdivided populations had lower lifetime reproductive success (LRS) at hot temperatures, but only in lines evolving under relaxed sexual selection, revealing a complex interaction between sexual selection, population structure, and thermal environmental stress on fitness. We also found an effect of population structure on several traits, including fertility and adult emergence success, under exposure to high thermal conditions. Finally, we found a strong negative effect of hot and stressful temperatures in fitness and associated traits. Our results show that population structure can exacerbate the impact of a warming climate, potentially leading to declines in population viability, but that sexual selection can buffer the negative influence of population subdivision on adaptation to warm temperatures</span><span>.</span></p>
Data from: Functional trait plasticity diverges between sexes in African cichlids: a contribution toward ecological sexual dimorphism?
<p>Phenotypic plasticity enables development to produce multiple phenotypes in response to environmental conditions. Plasticity driven variation has been suggested to play a key role in adaptive divergence, and plasticity itself can evolve. However, the interaction of plasticity with the multiple levels involved with adaptive divergence is less understood. For example, sexual dimorphism can contribute to adaptive variation through ecological sexual dimorphism (ESD), but the contribution of plasticity to this phenomenon is unknown. Therefore, to determine the potential contribution of plasticity to ESD, we used the adaptive radiation of Malawi cichlids. Two mouthbrooding species (<em>Labeotropheus fuelleborni </em>and <em>Tropheops</em> "Red Cheek", hereafter LF and TRC respectively) with differences in foraging tactics underwent foraging experiments using benthic and limnetic treatments while accounting for sex. Plasticity in craniofacial shape and three functionally important traits were measured. Plasticity was shown, but without any sex-based differences in shape. However, for mechanical advantage traits of the mandible sex by diet interactions were found. This suggests that ESD, may be influenced by phenotypic plasticity that diverges between sexes. Given the involvement of the mandible in parental care in cichlids this may indicate that sexual divergence in plasticity may trade-off against maternal care tactics.</p>
Plastic background colour matching in the springbok mantis
<p><span>Within-species variation in colour phenotypes is widespread in animals. One mechanism by which such variation can be maintained is plastic background matching, where individuals plastically develop a similar colour to that of their surroundings. A few examples are known from insects that exhibit green-brown colour polyphenisms. But the extent to which plastic colour responses are shaped by other factors, such as genetic variation in plasticity or the interaction of other environmental cues, is poorly understood. Here, we investigate the plasticity of body colouration in the springbok mantis, <em>Miomantis caffra</em>—a species where hatchlings emerge brown in colour and typically change to green but sometimes remain entirely or partly brown through successive moults. We reared 350 mantises from 10 full-sib families on a green or brown background under a high or low temperature and a high or low humidity using a fully-factorial, split-brood design, and recorded colour phenotypes (all green, all brown, or mixed colouration) after 14 weeks of development. We found very strong evidence of developmental plasticity for background matching: the green background induced a higher incidence of the all-green phenotype, whereas the brown background produced more of the all-brown and mixed phenotypes. The all-green phenotype was also universally more common under higher humidity, and under higher temperature when the background was green. However, not all body parts showed the same level of environmental sensitivity: the steepest reaction norms were observed in the mid-legs and hindlegs, potentially reflecting the selection for disruptive colouration of the body outline in browner environments. Using model comparison techniques, we found little evidence of genotype-level variation in colour plasticity—a pattern likely the result of strong viability selection for camouflage. Our study shows how developmental plasticity in colouration can be triggered directly by the colour of the environment and indirectly by climatic cues associated with habitat colouration. We argue that this high level of developmental plasticity has likely evolved due to the diversity of habitats but the sedentary lifestyle of this sit-and-wait predator.</span></p>
Phenotypic plasticity determines differences between the skulls of tigers from mainland Asia
<p>Tiger subspecific taxonomy is controversial because of morphological and genetic variation found between now fragmented populations, yet the extent to which phenotypic plasticity or genetic variation affects phenotypes of putative tiger subspecies has not been explicitly addressed. In order to assess the role of phenotypic plasticity in determining skull variation, we compared skull morphology amongst continental tigers from zoos and the wild. In turn, we examine continental tiger skulls from across their wild range, to evaluate how the different environmental conditions experienced by individuals in the wild can influence morphological variation. Fifty-seven measurements from 172 specimens were used to analyse size and shape differences amongst wild and captive continental tiger skulls. Captive specimens have broader skulls, and shorter rostral depths and mandible heights than wild specimens. In addition, sagittal crest size is larger in wild Amur tigers compared with those from captivity, and it is larger in wild Amur tigers compared to other wild continental tigers. The degree of phenotypic plasticity shown by the sagittal crest, skull width, and rostral height suggests that the distinctive shape of Amur tiger skulls compared with that of other continental tigers is mostly a phenotypically plastic response to differences in their environments. </p>
Surface Strain Data and Principal Component Analysis from Crystal Plasticity Simulations
<p>This is a dataset of surface strain data along y-z surfaces during tensile loading along the x direction of polycrystalline Al samples. Surface strain data are recorded during periodic intervals. Principal component analysis is implemented on the loading sequences.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.