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476 results for “footprints”
Supplementary Online Data for Characterizing the hologenome of L. pustulata and tracing genomic footprints of lichenization
<p>Processed data and scripts, as well as the the figures and tables for <em>Characterizing the hologenome of L. pustulata and tracing genomic footprints of lichenization</em>. The <em>zip</em> file contains three subfolders for <em>Chapter 3</em>, <em>Chapter 4</em>, <em>Chapter 5</em> of <em>Characterizing the hologenome of L. pustulata and tracing genomic footprints of lichenization</em>. Each subfolder comes with its own <em>README.md</em> further describing its contents.</p> <p>Furthermore the read mappings against <em>Lasallia pustulata</em> individually, as well as the ones used for the <em>anvi´o</em> visualization, which include <em>L. pustulata</em>, <em>Trebouxia sp.</em> as well as the 499 bacterial scaffolds are given. The <em>Trinity</em> RNAseq assemblies (guided and unguided) are given too.<br> </p>
Extracting Regulatory Chromatin Footprint from Cell-Free DNA
<p>Cell-free DNA (cfDNA) has emerged as a pivotal player in precision medicine, revolutionizing the diagnostic and therapeutic landscape. While its clinical applications have significantly increased in recent years, current cfDNA assays have limited ability to identify the active transcriptional programs that govern complex disease phenotypes and capture the heterogeneity of the disease. To address these limitations, we have developed a non-invasive platform to enrich and examine the active chromatin fragments (cfDNAac) in peripheral blood. The deconvolution of the cfDNAac signal from traditional nucleosomal chromatin fragments (cfDNAnuc) yields a catalog of features linking these circulating chromatin signals in blood to specific regulatory elements across the genome, including enhancers, promoters, and highly transcribed genes, mirroring the epigenetic data from the ENCODE project. Notably, these cfDNAac counts correlate strongly with RNA polymerase II activity and exhibit distinct expression patterns for known circadian genes. Additionally, cfDNAac signals across gene bodies and promoters show strong correlations with whole blood gene expression levels defined by GTEx. This study illustrates the utility of cfDNAac analysis for investigating epigenomics and gene expression, underscoring its potential for a wide range of clinical applications in precision medicine.</p>
Figure 5. Per capita water footprint between 2004-2019 in An assessment of the urban water footprint and blue water scarcity: A case study for Van (Turkey)
Figure 5. Per capita water footprint between 2004-2019 in Van province.
Data for global city carbon footprint estimation
<p>This dataset provides data used to calculate the carbon footprint of global cities. Sources have been provided in each file.</p>
Auroral Streamers as Ionospheric Footprints of Bursty Bulk Flows
<p>In-situ measurements in the magnetotail are sparse and limited to single points. In the ionosphere, on the other hand, there is a broad range of observations, including magnetometers, aurora imagers, and radars. Since the nightside ionosphere is to some extent the projection of the magnetotail plasma sheet, it can be used as a monitor of the dynamics of the tail. In order to interpret the ionosphere and ground observations properly it is fundamental to understand the coupling process between the ionosphere and the magnetosphere. Here, we use the global magnetohydrodynamic simulation model, OpenGGCM-CTIM-RCM, to investigate such a coupling process. </p> <p>We find that Bursty Bulk Flows (BBFs) are identifiable in the simulation as ionospheric auroral streamers, and are an important processes that greatly contributes to convection of the tail. In this paper, we map flows from the magnetotail to the ionosphere along magnetic field lines. We consider three states of the magnetotail: immediately before substorm onset, during substorm expansion, and during a steady magnetic convection event. We find that the streamers are north-south aligned in midnight sector, and they have more east-west orientation in the dawn and dusk regions. The tail and the ionosphere activity increase during SMC event compared to the pre-onset and quiet times.</p> <p> </p>
Data from: A genomic footprint of hybrid zone movement in crested newts
Speciation typically involves a stage in which species can still exchange genetic material. Interspecific gene flow is facilitated by the hybrid zones that such species establish upon secondary contact. If one member of a hybridizing species pair displaces the other, their hybrid zone would move across the landscape. Although theory predicts that moving hybrid zones quickly stagnate, hybrid zones tracked over one or a few decades do not always follow such a limitation. This suggests that hybrid zones have the potential to traverse considerable distances over extended periods of time. When hybrid zones move, introgression is predicted to result in biased gene flow of selectively neutral alleles, from the receding species into the advancing species. We test for such a genomic footprint of hybrid zone movement in a pair of crested newt species (genus Triturus) for which we have a priori support for westward hybrid zone movement. We perform a multilocus phylogeographical survey and conduct Bayesian clustering analysis, estimation of ancestry and heterozygosity, and geographical cline analysis. In a 600 km wide area east of the present day hybrid zone a genomic footprint constitutes empirical evidence consistent with westward hybrid zone movement. The crested newt case suggests that hybrid zone movement can occur over an extensive span of time and space. Inferring hybrid zone movement provides fundamental insight into historical biogeography and the speciation process, and we anticipate that hybrid zones will prove to be far more mobile than currently appreciated.
Replication Package for 'Exploring the Carbon Footprint of Hugging Face's ML Models: A Repository Mining Study'
<p>Replication Package attached to the 'Exploring the Carbon Footprint of Hugging Face's ML Models: A Repository Mining Study' article. Within the README and accompanying scripts, you will find detailed instructions to guide you through the analysis conducted in the article.</p>
CARBON FOOTPRINT OF NEPALESE HEALTHCARE SYSTEM-A STUDY OF DHULIKHEL HOSPITAL
<p>It contains a dataset used for the life cycle assessment of public health sector. </p>
P. maxima footprints from F-G22 quadrates
**Description:**<br> **Location**: Site 1 of Ipolytarnóc locality, Hungary<br> **Position**: F-G22 quadrates of site 1<br> **Age**: Lower Miocene<br> **Material**: Imprints of partial left pes and right pes<br> **Reference**: Gábor Botfalvai, János Magyar, Veronika Watah, Imre Szarvas & Péter Szolyák (2022): Large-sized pentadactyl carnivore footprints from the early Miocene fossil track site at Ipolytarnóc (Hungary): 3D data presentation and ichnotaxonomical revision, Historical Biology,<br> DOI: 10.1080/08912963.2022.2109967<br> Source: Objaverse 1.0 / Sketchfab
Turtle Footprint Fossil (Chelonypus isp)
**Icnoespecie:** *Chelonypus* isp. **Descripción:** Huellas de quelonio registradas como un hiporelieve convexo en arenisca roja de grano grueso, formada en ambientes deltaicos. Se aprecian dígitos con falanges ungueales y talón. **Numero de Registro**: MGUV 2314 **Edad:** 237-227 Ma. Carniense medio (Triasico Superior) **Localidad:** Domeño (Valencia, España) **Clasificación etológica**: Repichnia (Bioturbación)** **Técnica: **fotogrametría con photoscan, calidad alta **Cámara:** Sony DSC HX60V **Autor:** Jose A. Villena **Referencia bibliográfica**: Matías Reolid, Ana Márquez-Aliaga, Margarita Belinchón, Anna García-Forner, José Villena, Carlos Martínez-Pérez. Ichnological evidence of semi-aquatic locomotion in early turtles from eastern Iberia during the Carnian Humid Episode (Late Triassic), Palaeogeography, Palaeoclimatology, Palaeoecology, Vol. 490, 2018, Pages 450-461 https://doi.org/10.1016/j.palaeo.2017.11.025  Source: Objaverse 1.0 / Sketchfab
P. maxima footprint from C17 quadrate
**Description:**<br> **Location**: Site 1 of Ipolytarnóc locality, Hungary<br> **Position**: C17 quadrate of site 1<br> **Age**: Lower Miocene<br> **Material**: Imprint of right manus<br> **Reference**: Gábor Botfalvai, János Magyar, Veronika Watah, Imre Szarvas & Péter Szolyák (2022): Large-sized pentadactyl carnivore footprints from the early Miocene fossil track site at Ipolytarnóc (Hungary): 3D data presentation and ichnotaxonomical revision, Historical Biology,<br> DOI: 10.1080/08912963.2022.2109967<br> Source: Objaverse 1.0 / Sketchfab
Impact of Idiopathic Scoliosis on Balance and Footprint Symmetry in Adolescents
ClinicalTrials.gov study NCT06812013. IPD Sharing: NO. Countries: 1. Publications: 0.
Ecological Footprint Awareness Program in 60-72 Months Children
ClinicalTrials.gov study NCT06248021. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Reducing the Carbon Footprint Through Education on the Effects of Inhalation Anesthetics on Global Warming
ClinicalTrials.gov study NCT06084039. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Sustainable Choice to Reduce Carbon Footprint
ClinicalTrials.gov study NCT06780969. IPD Sharing: NO. Countries: 1. Publications: 0.
The Difference in Carbon Footprint Between Diagnostic Upper GI Endoscopy in Dyspeptic Patients Versus Therapeutic Upper GI Bleeding
ClinicalTrials.gov study NCT07261228. IPD Sharing: NO. Countries: 1. Publications: 0.
Microbiota Footprint and Frailty Phenotype in Virologically Suppressed People Living With HIV
ClinicalTrials.gov study NCT05078957. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Restaurant Menu Carbon Footprint Labeling
ClinicalTrials.gov study NCT05592340. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Antibiotic Footprint Thailand - Pilot Questionnaire Study
ClinicalTrials.gov study NCT03368768. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Evolution of HIV Reservoir, Inflammation and Microbiota Footprint of PLWH Switching to Long-acting Injectable Treatment Compared to Patients on Oral Dual or Triple Anti-integrase-based Therapy
ClinicalTrials.gov study NCT05303337. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.