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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
In vivo organization of bacterial transcription initiation complexes at a genome-scale
GEO Series GSE54407. Escherichia coli str. K-12 substr. MG1655. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.
GEO Series GSE157339. Mus musculus. 122 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215181. Mus musculus. 135 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [scRNAseq_scTCRseq]
GEO Series GSE274545. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Vostok (CG11504): A New Looping Factor for the Organization of the Regulatory Genome in the Drosophila Brain
GEO Series GSE285744. Drosophila melanogaster. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
RNA-Chromatin Interactome Reveals ncRNA Functions for Transcription Regulation in 3D Genome Organization
GEO Series GSE85764. Homo sapiens; Drosophila melanogaster. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Early events in transcription and genome organization after STAG2 reconstitution in human cancer cells [RNA-Seq]
GEO Series GSE318552. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Complete genome sequence of Escherichia coli C - old model organism with a new application in biofilm research
GEO Series GSE125110. Escherichia coli. 6 samples. Type: Expression profiling by high throughput sequencing.
Lamins organize the three dimensional genome from nuclear periphery in ES cells
GEO Series GSE89520. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Distinct 3D Genome Organization in the Two Nuclei of Tetrahymena thermophila
GEO Series GSE125628. Tetrahymena thermophila. 18 samples. Type: Other.
Deterioration of multi-level 3D genome organization during breast cancer progression
GEO Series GSE246689. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis
GEO Series GSE274038. Homo sapiens. 47 samples. Type: Other.
Spatial genome re-organization between fetal and adult hematopoietic stem cells [RNA-Seq]
GEO Series GSE122908. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215178. Mus musculus. 10 samples. Type: Other.
Spatial genome re-organization between fetal and adult hematopoietic stem cells [Capture-C]
GEO Series GSE119339. Mus musculus. 12 samples. Type: Other.
Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes
<p>We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.</p>
Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes
<p>We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.</p>
Spatial genome re-organization between fetal and adult hematopoietic stem cells [Hi-C]
GEO Series GSE119347. Mus musculus. 4 samples. Type: Other.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [RNA-seq]
GEO Series GSE54405. Escherichia coli str. K-12 substr. MG1655. 2 samples. Type: Expression profiling by high throughput sequencing.
In vivo organization of bacterial transcription initiation complexes at a genome-scale [TSS-seq]
GEO Series GSE54406. Escherichia coli str. K-12 substr. MG1655. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.