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647 results for “historical data”
Historic daily air temperature and precipitation series data for Wudaoliang and Tuotuohe sations (2009-2021)
<p>This dataset contains the historic daily air temperature and precipitation for Wudaoliang and Tuotuohe sations in Qinghai Province from 2009 to 2021</p>
Historical music inventories 1500-1800 (Irish Data)
<p>The <a href="http://in-dev.rism.digital/pages/list">Historical music inventories series</a> is an online resource that brings together different catalogues of music collections from the past. It is a unique tool for understanding music production, transmission and consumption. It allows a better knowledge of the context of preserved sources and brings to light important information about sources or indeed whole music collections that no longer exist. Having the content of the inventory in a digital form creates the opportunity to browse and search a library catalogue as it existed several centuries ago. This data is a subset containing only the Irish data.</p>
Figures - Semantic analysis of web archive historical data 1983 "Marche pour l'égalité et contre le racisme"
Open the record for dataset details and reuse information.
Historical snowfall precipitation data in the Apennine Mountains, Italy
<p>This database includes a large collection of quality-controlled and homogenized historical snow records measured in the 1951-2001 period in the Central and Southern Apennine Mountains (Italy). Such data have been manually digitized from the Hydrological Yearbooks of the Italian National Hydrological and Mareographic Service (hereafter, NHMS), the institution that managed the hydro-meteorological data collection in Italy from 1917 to 2002. More specifically, the rescued dataset includes the monthly observations of three different variables:</p> <p>· The snow cover duration (SCD), which is defined as total number of days in a given month with snow depth on the ground >=1 cm. This variable is available for 110 stations between 288 and 1430 m above the sea level (ASL).</p> <p>· The number of days with snowfall (NDS), which is total number of days in a given month on which the accumulated snowfall (i.e. the amount of fresh snow with respect to the previous observations) is at least 1 cm. This variable is available for 114 stations between 288 and 1430 m ASL.</p> <p>· The height of new snow (HN), which is defined as the monthly amount of fresh snow (expressed in cm). The monthly value is intended as the sum of daily HN data observed in a determined month. This variable is available for 120 stations between 288 and 1750 m ASL.</p> <p>Note that for HN variable, the data availability is restricted to the period 1971-2001.</p> <p>The considered dataset has been subjected to an accurate quality control consisting of several statistical tests: the gross error test, which flags the data that are above or below acceptable physical limits, the consistency test, which involves an inter-variable check, and the tolerance test, which is focused on the outlier detection. In addition, the homogeneity of the rescued time series has been checked using Climatol method (Guijarro, 2018). The latter is based on the Standard Normal Homogeneity Test (Alexandersson, 1986) for the identification of the breaks and on a linear regression approach for the adjustments (Easterling and Peterson, 1995). Climatol has been also employed for the filling of missing values.</p> <p>The database is structured into three different folders (one for each variable). In a determined folder, the user finds two files, one containing the main information regarding the available stations (code, station name, latitude and longitude (in decimal degrees) and altitude ASL (in m)), the other one the monthly time series for the considered variable.</p> <p>Note that the original data sources of this database, the Hydrological Yearbooks of the NHMS, are freely accessible in printed version (i.e. as scanned images in portable document format) through the Italian Institute for Environmental Protection and Research (ISPRA) website (http://www.bio.isprambiente.it/annalipdf).</p> <p>Additional information about the data rescue processing can be found in the preprint “Historical snowfall measurements in the Central and Southern Apennine Mountains: climatology, variability and trend”, open for discussion in The Cryosphere journal (https://doi.org/10.5194/egusphere-2024-1056).</p> <p> </p> <p><strong>References</strong></p> <p>Alexandersson, H.: A homogeneity test applied to precipitation data, J. Climatol., 6, 661–675, 1986.</p> <p>Easterling, D. R. and Peterson, T.C.: A new method for detecting and adjusting for undocumented discontinuities in climatological time series, International Journal Climatol.,15, 369–377, https://doi.org/10.1002/joc.3370150403, 1995.</p> <p>Guijarro, J. A.: Homogenization of climatic series with Climatol, Climatol manual, https://www.climatol.eu/homog_climatolen.pdf (last access: 15 February 2024), 2018.</p>
Historic Caddo Network Analysis Data
<p>Ceramic and lithic types and counts used in the Historic Caddo network analysis for northeast Texas. This dataset is incomplete, and does not include the site locations used to plot the network.</p>
Data from: Speciation and historical invasions of the Asian black-spined toad (Duttaphrynus melanostictus)
<p>This data package includes the following datasets analyzed in the corresponding publication: </p> <ul> <li>An alignment (fasta format) of 130,792 bp concatenating the RAD tags present in at least 80 of the 88 <em>Duttaphrynus </em>samples considered (Duttaphrynus_ddRADseq_n88p80_131kb.fas). It was used to produce the tree presented in Supplementary Fig. 1.</li> <li>An alignment (fasta format) of 83,652 bp concatenating the RAD tags present in 25 unadmixed <em>Duttaphrynus </em>samples (Duttaphrynus_ddRADseq_n25p25_84kb.fas). It was used in the phylogenetic analyses presented in Fig. 1a and Supplementary Fig. 2.</li> <li>Two alignments (fasta format) of 482,648 bp and 628,293 bp concatenating the RAD tags present in 17 and 52 samples of <em>D. melanostictus</em> s. s. and <em>D. </em>cf.<em> melanostictus</em>, respectively (Duttaphrynus_melanostictus_ss_West_n17p17_483kb.fas and Duttaphrynus_cf_melanostictus_East_n52p52_628kb.fas). These were used in the network analyses presented in Fig. 2b.</li> <li>Three matrices of 851 SNPs, 3364 SNPs and 4782 SNPs, genotyped in 69, 17 and 52 samples of <em>D. melanostictus</em> s. l., <em>D. melanostictus</em> s. s. and <em>D. </em>cf. <em>melanostictus</em>, respectively (Duttaphrynus_melanostictus_sl_n69p69wrs_851SNPs.str, Duttaphrynus_melanostictus_ss_West_n17p17wrs_3364SNPs.str, Duttaphrynus_cf_melanostictus_East_n52p52wrs_4782SNPs.str). These were used in the Bayesian clustering and PCA analyses presented in Fig. 2a and Supplementary Figs. 3-4.</li> <li>An alignement (fasta format) of 383 sequences of the mitochondrial gene 16S (558 bp), including 382 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_16S.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 5.</li> <li>An alignement (fasta format) of 495 sequences of the mitochondrial gene <em>ND3 </em>(469 bp), including 494 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_ND3.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 6.</li> <li>An alignement (fasta format) of 27 full or partial mitogenomes (16,844 bp), including 26 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_mitogenomes.fas). It was used in the phylogenetic analyses presented in Fig. 1b and Supplementary Fig. 7.</li> </ul> <p>The meta-data associated to these datasets are provided in the corresponding publication (Supplementary Data 1 and 4).</p>
Data from: Spatiotemporal diversification of the true frogs (Genus Rana): a historical framework for a widely studied group of model organisms
True frogs of the genus Rana are widely used as model organisms in studies of development, genetics, physiology, ecology, behavior, and evolution. Comparative studies among the more than 100 species of Rana rely on an understanding of the evolutionary history and patterns of diversification of the group. We estimate a well-resolved, time-calibrated phylogeny from sequences of six nuclear and three mitochondrial loci sampled from most species of Rana, and use that phylogeny to clarify the group's diversification and global biogeography. Our analyses consistently support an "Out of Asia" pattern with two independent dispersals of Rana from East Asia to North America via Beringian land bridges. The more species-rich lineage of New World Rana appears to have experienced a rapid radiation following its colonization of the New World, especially with its expansion into montane and tropical areas of Mexico, Central America, and South America. In contrast, Old World Rana exhibit different trajectories of diversification; diversification in the Old World began very slowly and later underwent a distinct increase in speciation rate around 29–18 Ma. Net diversification is associated with environmental changes and especially intensive tectonic movements along the Asian margin from the Oligocene to early Miocene. Our phylogeny further suggests that previous classifications were misled by morphological homoplasy and plesiomorphic color patterns, as well as a reliance primarily on mitochondrial genes. We provide a phylogenetic taxonomy based on analyses of multiple nuclear and mitochondrial gene loci.
Data from: Echoes of a distant time: effects of historical processes on contemporary genetic patterns in Galaxias platei in Patagonia
Interpreting the genetic structure of a metapopulation as the outcome of gene flow over a variety of timescales is essential for the proper understanding of how changes in landscape affect biological connectivity. Here we contrast historical and contemporary connectivity in two metapopulations of the freshwater fish Galaxias platei in northern and southernmost Patagonia where paleolakes existed during the Holocene and Pleistocene, respectively. Contemporary gene flow was mostly high and asymmetrical in the northern system while extremely reduced in the southernmost system. Historical migration patterns were high and symmetric in the northern system and high and largely asymmetric in the southern system. Both systems showed a moderate structure with a clear pattern of isolation by distance (IBD). Effective population sizes were smaller in populations with low contemporary gene flow. An approximate Bayesian computation (ABC) approach suggests a late Holocene colonization of the lakes in the northern system and recent divergence of the populations from refugial populations from east and west of the Andes. For the southern system, the ABC approach reveals that some of the extant G. platei populations most likely derive from an ancestral population inhabiting a large Pleistocene paleolake while the rest derive from a higher-altitude lake. Our results suggest that neither historical nor contemporary processes individually fully explain the observed structure and geneflow patterns and both are necessary for a proper understanding of the factors that affect diversity and its distribution. Our study highlights the importance of a temporal perspective on connectivity to analyse the diversity of spatially complex metapopulations.
Data from: Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population
Understanding the causes of population decline is crucial for conservation management. We therefore used genetic analysis both to provide baseline data on population structure and to evaluate hypotheses for the catastrophic decline of the South American sea lion (Otaria flavescens) at the Falkland Islands (Malvinas) in the South Atlantic. We genotyped 259 animals from 23 colonies across the Falklands at 281 bp of the mitochondrial hypervariable region and 22 microsatellites. A weak signature of population structure was detected, genetic diversity was moderately high in comparison with other pinniped species, and no evidence was found for the decline being associated with a strong demographic bottleneck. By combining our mitochondrial data with published sequences from Argentina, Brazil, Chile and Peru, we also uncovered strong maternally directed population structure across the geographical range of the species. In particular, very few shared haplotypes were found between the Falklands and South America, and this was reflected in correspondingly low migration rate estimates. These findings do not support the prominent hypothesis that the decline was caused by migration to Argentina, where large-scale commercial harvesting operations claimed over half a million animals. Thus, our study not only provides baseline data for conservation management but also reveals the potential for genetic studies to shed light upon long-standing questions pertaining to the history and fate of natural populations.
Data from: Persistent genetic signatures of historic climatic events in an Antarctic octopus
Repeated cycles of glaciation have had major impacts on the distribution of genetic diversity of the Antarctic marine fauna. During glacial periods, ice cover limited the amount of benthic habitat on the continental shelf. Conversely, more habitat and possibly altered seaways, were available during interglacials when the ice receded and the sea level was higher. We used microsatellites and partial sequences of the mitochondrial cytochrome oxidase c subunit 1 (MT-CO1) gene to examine genetic structure in the direct-developing, endemic Southern Ocean octopod Pareledone turqueti Joubin, 1905 sampled from a broad range of areas that circumvent the Antarctic continent. We find that, unusually for a species with poor dispersal potential, P. turqueti has a circumpolar distribution and is also found off the islands of South Georgia and Shag Rocks. The overriding pattern of spatial genetic structure can be explained by hydrographic (with ocean currents both facilitating and hindering gene flow) and bathymetric features. The Antarctic Peninsula region displays a complex population structure, consistent with its varied topographic and oceanographic influences. Genetic similarities between the Ross and Weddell Seas, however, are interpreted as a persistent historic genetic signature of connectivity during the hypothesized Pleistocene Western Antarctic Ice Sheet collapses. A calibrated molecular clock indicates two major lineages within P. turqueti, a continental lineage and a subAntarctic lineage, that diverged in the mid-Pliocene with no subsequent gene flow. Both lineages survived subsequent major glacial cycles. Our data are indicative of potential refugia around the Antarctic continent within the Ross Sea, Weddell Sea and off Adélie Land, with mean age of mtDNA diversity within these main continental lineages coinciding with Pleistocene glacial cycles.
Data from: The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird
Adaptation to local environmental conditions and the range dynamics of populations can influence evolutionary divergence along environmental gradients. Thus, it is important to investigate patterns of both phenotypic and genetic variation among populations to reveal the respective roles of these two types of factors in driving population differentiation. Here, we test for evidence of phenotypic and genetic structure across populations of a passerine bird (Zosterops borbonicus) distributed along a steep elevational gradient on the island of Réunion. Using eleven microsatellite loci screened in 401 individuals from 18 localities distributed along the gradient, we found that genetic differentiation occurred at two spatial levels: (i) between two main population groups corresponding to highland and lowland areas, respectively, and (ii) within each of these two groups. In contrast, several morphological traits varied gradually along the gradient. Comparison of neutral genetic differentiation (FST) and phenotypic differentiation (PST) showed that PST largely exceeds FST at several morphological traits, which is consistent with a role for local adaptation in driving morphological divergence along the gradient. Overall, our results revealed an area of secondary contact mid-way up the gradient between two major, cryptic, population groups likely diverged in allopatry. Remarkably, local adaptation has shaped phenotypic differentiation irrespective of population history, resulting in different patterns of variation along the elevational gradient. Our findings underscore the importance of understanding both historical and selective factors when trying to explain variation along environmental gradients.
Data from: Genomic differentiation tracks earth-historic isolation in an Indo-Australasian archipelagic pitta (Pittidae; Aves) complex
Background: Allopatric speciation has played a particularly important role in archipelagic settings where populations evolve in isolation after colonizing different islands. The Indo-Australasian island realm is an unparalleled natural laboratory of biotic diversification. Here we explore how the level of earth-historic isolation has influenced genetic differentiation across the region by investigating phylogeographic patterns in the Pitta sordida species complex. Results: We generated a de novo genome and compared population genomics of 29 individuals of Pitta sordida from the entire distributional range and we reconstructed phylogenetic relationship using mitogenomes, a multi-nuclear gene dataset and single nucleotide polymorphisms (SNPs). We found deep divergence between an eastern and a western group of taxa across Indo-Australasia. Within both groups we have identified major lineages that are geographically separated into Philippines, Borneo, western Sundaland, and New Guinea, respectively. Although these lineages are genetically well-differentiated, suggesting a long-term isolation, there are signatures of extensive gene flow within each lineage throughout the Pleistocene, despite the wide geographic range occupied by some of them. We found little evidence of hybridization or introgression among the studied taxa, but forsteni from Sulawesi makes an exception. This individual, belonging to the eastern clade, is genetically admixed between the western and eastern clades. Geographically this makes sense as Sulawesi is not far from Borneo that houses a population of hooded pittas that belongs to the western clade. Conclusions: We found that geological vicariance events cannot explain the current genetic differentiation in the Pitta sordida species complex. Instead, the glacial-interglacial cycles may have played a major role therein. During glacials the sea level could be up to 120 m lower than today and land bridges formed within both the Sunda Shelf and the Sahul Shelf permitting dispersal of floral and faunal elements. The geographic distribution of hooded pittas shows the importance of overwater, "stepping-stone" dispersals not only to deep-sea islands, but also from one shelf to the other. The most parsimonious hypothesis is an Asian ancestral home of the Pitta sordida species complex and a colonization from west to east, probably via Wallacea.
Data from: Systematic and historical biogeography of the Bryconidae (Ostariophysi: Characiformes) suggesting a new rearrangement of its genera and an old origin of Mesoamerican ichthyofauna
Recent molecular hypotheses suggest that some traditional suprageneric taxa of Characiformes require revision, as they may not constitute monophyletic groups. This is the case for the Bryconidae. Various studies have proposed that this family (considered a subfamily by some authors) may be composed of different genera. However, until now, no phylogenetic study of all putative genera has been conducted. In the present study, we analyzed 27 species (46 specimens) of all currently recognized genera of the Bryconidae (ingroup) and 208 species representing all other families and most genera of the Characiformes (outgroup). Five genes were sequenced: 16SrRNA, Cytochrome b, recombination activating gene 1 and 2 and myosin heavy chain 6 cardiac muscle. The final matrix contained 4699 bp and was analyzed by maximum likelihood, maximum parsimony and Bayesian analyses. The results show that the Bryconidae, composed of Brycon, Chilobrycon, Henochilus and Salminus, is monophyletic and is the sister group of Gasteropelecidae + Triportheidae. However, the genus Brycon is polyphyletic. Fossil studies suggest that the family originated approximately 33 million years ago (Ma) and that one of the two main lineages persisted only in trans-Andean rivers, including Central American rivers, suggesting a much older origin of Mesoamerican ichthyofauna than previously accepted. Bryconidae is composed by five main clades, including the genera Brycon, Chilobrycon, Henochilus and Salminus, but a taxonomic review of these groups is needed. Our results points to a possible ancient invasion of Central America, dating about 17.4+/-8 Ma (late Oligocene/late Miocene), to explain the occurrence of Brycon in Central America.
Data from: Phylogenetics, delimitation and historical biogeography of the pantropical tree genus Thespesia (Malvaceae, Gossypieae)
Thespesia consists of 16 species of trees and shrubs from Southeast Asia–Oceania, Africa and America, the most well known being T. populnea, a small tree of tropical coastal areas around the world. Phylogenetic relationships in the genus and among its allies in tribe Gossypieae were inferred using three plastid and two nuclear regions to ascertain its generic delimitation and explore its biogeographical history. Maximum-likelihood and Bayesian analyses confirmed that Thespesia is not monophyletic and, based on these results, Azanza is reinstated to accommodate the two species previously placed in Thespesia section Lampas. Dating analyses and ancestral range estimation indicated that Thespesia s.s. most likely originated in Southeast Asia–Oceania c. 30 Mya, but extant species did not begin to differentiate until the late Miocene. Two dispersal events, one into Africa c. 11 Mya and another into America (Antilles) c. 9 Mya, gave rise to the African and the Greater Antillean endemics, respectively. The two most widespread hydrochorous species, T. populnea and T. populneoides, originated in Southeast Asia–Oceania from where they spread to other parts of the world. Our analysis also indicated a much earlier origin than previously reported for Eumalvoideae and its tribes, suggesting that vicariance might have had an important role early in the history of these groups.
Data from: The interplay of dispersal limitation, rivers, and historical events shapes the genetic structure of an Amazonian frog
Disentangling the impact of landscape features such as rivers and historical events on dispersal is a challenging but necessary task to gain a comprehensive picture of the evolution of diverse biota such as that found in Amazonia. Adenomera andreae, a small, territorial, terrestrial frog species of the Amazonian forest represents a good model for such studies. We combined Cytochrome b sequences with 12 microsatellites to investigate the genetic structure at two contrasted spatial scales in French Guiana: along a ~6 km transect to evaluate dispersal ability and between paired bank populations along a ~65 km stretch of the Approuague river to test the effect of rivers as barriers to dispersal. We observed significant spatial genetic structure between individuals at a remarkably small geographical scale and conclude that the species has a restricted dispersal ability likely tied to its life history traits. Mitochondrial and microsatellite data also indicate a high level of differentiation among populations on opposite banks of the river and, in some cases, among populations on the same riverbank. These results suggest that the observed population structure in A. andreae is due to restricted dispersal abilities combined with the action of rivers and Quaternary population isolation. Given that Amazonia hosts a great portion of anurans, as well as other small vertebrates, that display life history traits comparable to Adenomera andreae, we argue that our analyses provide new insights into the complex interactions among evolutionary processes shaping Amazonian biodiversity.
Data from: Historic and contemporary use of catfish aquaculture by piscivorous birds in the Mississippi Delta
<p>This dataset contains data used in the manuscript "Historic and contemporary use of catfish aquaculture by piscivorous birds in the Mississippi Delta", published in The Condor: Ornithological Applications. All data were collected in northwest Mississippi during winters (October - April) of 2000-2001, 2003-2004, 2015-2016, 2016-2017, and 2017-2018. Two primary types of data are present: 1) roost surveys, and 2) aquaculture cluster surveys. Roost surveys were aerial surveys in which all known double-crested cormorant night roosts in northwest Mississippi were surveyed and cormorants were counted. Roost survey data can be found in the "Cormorant_Roost_Survey_Counts.xlxs" file. For the aquaculture cluster surveys, clusters were defined as U.S. Geological Survey land survey sections that contained aquaculture. For each year of data, a random subset of these clusters were chosen to be aerial surveyed and double-crested cormorants, great blue herons, and great egrets were recorded per cluster. Basic descriptive statistics of the clusters can be found in the "Cluster_Descriptive_Stats.xlxs" file. The "Historic_vs_Contemporary_Cormorants.xlxs" file was used to compare cormorant density on aquaculture clusters between the historic period (2000-2001, 2003-2004) and contemporary period (2015-2016, 2016-2017, and 2017-2018). Lastly, the "Cluster_Survey_Data_Contemporary.xlxs" file contains data recorded during the contemporary period only, and other variables regarding the clusters are also present.</p>
Data from: High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements
Sample availability limits population genetics research on many species, especially taxa from regions with high diversity. However, many such species are well represented in museum collections assembled before the molecular era. Development of techniques to recover genetic data from these invaluable specimens will benefit biodiversity science. Using a mixture of freshly preserved and historical tissue samples, and a sequence capture probe set targeting >5000 loci, we produced high-confidence genotype calls on thousands of single nucleotide polymorphisms (SNPs) in each of five South-East Asian bird species and their close relatives (N = 27–43). On average, 66.2% of the reads mapped to the pseudo-reference genome of each species. Of these mapped reads, an average of 52.7% was identified as PCR or optical duplicates. We achieved deeper effective sequencing for historical samples (122.7×) compared to modern samples (23.5×). The number of nucleotide sites with at least 8× sequencing depth was high, with averages ranging from 0.89 × 106 bp (Arachnothera, modern samples) to 1.98 × 106 bp (Stachyris, modern samples). Linear regression revealed that the amount of sequence data obtained from each historical sample (represented by per cent of the pseudo-reference genome recovered with ≥8× sequencing depth) was positively and significantly (P ≤ 0.013) related to how recently the sample was collected. We observed characteristic post-mortem damage in the DNA of historical samples. However, we were able to reduce the error rate significantly by truncating ends of reads during read mapping (local alignment) and conducting stringent SNP and genotype filtering.
Data from: Unraveling historical introgression and resolving phylogenetic discord within Catostomus (Osteichthys: Catostomidae)
Background: Porous species boundaries can be a source of conflicting hypotheses, particularly when coupled with variable data and/or methodological approaches. Their impacts can often be magnified when non-model organisms with complex histories of reticulation are investigated. One such example is the genus Catostomus (Osteichthys, Catostomidae), a freshwater fish clade with conflicting morphological and mitochondrial phylogenies. The former is hypothesized as reflecting the presence of admixed genotypes within morphologically distinct lineages, whereas the latter is interpreted as the presence of distinct morphologies that emerged multiple times through convergent evolution. We tested these hypotheses using multiple methods, to including multispecies coalescent and concatenated approaches. Patterson's D-statistic was applied to resolve potential discord, examine introgression, and test the putative hybrid origin of two species. We also applied naïve binning to explore potential effects of concatenation. Results: We employed 14,007 loci generated from ddRAD sequencing of 184 individuals to derive the first highly supported nuclear phylogeny for Catostomus. Our phylogenomic analyses largely agreed with a morphological interpretation,with the exception of the placement of Xyrauchen texanus, which differs from both morphological and mitochondrial phylogenies. Additionally, our evaluation of the putative hybrid species C. columbianus revealed a lack introgression and instead matched the mitochondrial phylogeny. Furthermore, D-statistic tests clarified all discrepancies based solely on mitochondrial data, with agreement among topologies derived from concatenation and multispecies coalescent approaches. Extensive historic introgression was detected across six species-pairs. Potential endemism in the Virgin and Little Colorado Rivers was also apparent, and the former genus Pantosteus was derived as monophyletic, save for C. columbianus. Conclusions: Complex reticulated histories detected herein support the hypothesis that introgression was responsible for conflicts that occurred within the mitochondrial phylogeny, and explains discrepancies found between it and previous morphological phylogenies. Additionally, the hybrid origin of C. columbianus was refuted, but with the caveat that more fine-grain sampling is still needed. Our diverse phylogenomic approaches provided largely concordant results, with naïve binning useful in exploring the single conflict. Considerable diversity was found within Catostomus across southwestern North America, with two drainages [Virgin River (UT) and Little Colorado River (AZ)] reflecting unique composition.
Presence, precipitation, and temperature data used to estimate eastern forest songbird historical distributions using climatic niche modeling
<p>Boundaries between vegetation types, known as ecotones, can be dynamic in response to climatic changes. The North American Great Plains includes a forest-grassland ecotone in the south-central United States that has expanded and contracted in recent decades in response to historical periods of drought and pluvial conditions. This dynamic region also marks a western distributional limit for many passerine birds that typically breed in forests of the eastern United States. To better understand the influence that variability can exert on broad-scale biodiversity, we explored historical longitudinal shifts in the western extent of breeding ranges of eastern forest songbirds in response to the variable climate of the southern Great Plains. We used climatic niche modeling to estimate current distributional limits of nine species of forest-breeding passerines from 30-year average climate conditions from 1980 to 2010. During this time the southern Great Plains experienced an unprecedented wet period without periodic multi-year droughts that characterized the region's long-term climate from the early 1900s. Species' climatic niche models were then projected onto two historical drought periods: 1952–1958 and 1966–1972. Threshold models for each of the three time periods revealed dramatic breeding range contraction and expansion along the forest-grassland ecotone. Precipitation was the most important climate variable defining breeding ranges of these nine eastern forest songbirds. Range limits extended farther west into southern Great Plains during the more recent pluvial conditions of 1980–2010 and contracted during historical drought periods. An independent dataset from BBS was used to validate 1966–1972 range limit projections. Periods of lower precipitation in the forest-grassland ecotone are likely responsible for limiting the western extent of eastern forest songbird breeding distributions. Projected increases in temperature and drought conditions in the southern Great Plains associated with climate change may reverse range expansions observed in the past 30 years.</p>
Data from: Population responses to a historic drought across the range of the common monkeyflower (Mimulus guttatus)
<p>This dataset contains both metadata and phenotype data for both of the resurrections experiments described in Kooyers et al. 2020. Datasets are uploaded as .csv files. Please read the readme files for descriptions of the data in each .csv file.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.