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FIGURE 2 in A new species of Mud Snake (Serpentes, Homalopsidae, Gyiophis Murphy & Voris, 2014) from Myanmar with a first molecular phylogenetic assessment of the genus
FIGURE 2. Distribution of Gyiophis salweenensis sp. nov. as well as G. maculosa and G. vorisi based on Murphy (2007b) in Myanmar.
FIGURE 5 in A new species of Mud Snake (Serpentes, Homalopsidae, Gyiophis Murphy & Voris, 2014) from Myanmar with a first molecular phylogenetic assessment of the genus
FIGURE 5. Flooded grassland habitat near where Gyiophis salweenensis sp. nov. was found. Photograph by Evan Quah.
FIGURE 1 in A new species of Mud Snake (Serpentes, Homalopsidae, Gyiophis Murphy & Voris, 2014) from Myanmar with a first molecular phylogenetic assessment of the genus
FIGURE 1. Maximum Likelihood tree of the family Homalopsidae Bonaparte, 1845 highlighting the phylogenetic position of Gyiophis salweenensis sp. nov. Bayesian posterior probabilities (BPP) and Maximum Likelihood (ML) bootstrap values (BPP/ ML), respectively, are listed at the nodes.
FIGURE 4 in A new species of Mud Snake (Serpentes, Homalopsidae, Gyiophis Murphy & Voris, 2014) from Myanmar with a first molecular phylogenetic assessment of the genus
FIGURE 4. Position and number of supralabials and other head scales on the holotype of Gyiophis salweenensis sp. nov., A: The right side of the head. B: The left side of the head. AT = anterior temporal; F = frontal; IF = infralabial; IN = internasal; L = loreal; LMT = lower middle temporal; LPT = lower posterior temporal; M = mental; MPT = middle posterior temporal; N = nasal; P = parietal; PF = prefrontal; PO = postocular; PrO = preocular; R = rostral; SL = supralabial; SO = supraocular; UMT = upper middle temporal; UPT = upper posterior temporal. Photographs by Evan Quah.
FIGURE 5 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 5. Variations in ventral color patterns in life specimens of Pristimantis leopardus sp. nov. A, adult male, MHUA-A 8856, paratype; B, adult male, MHUA-A 8844, paratype; C, adult male, MHUA-A 9126, paratype; D, adult male, MHUA-A 8858, paratype. Photos by José Fang.
FIGURE 4 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 4. Variation in dorsal color patterns of life specimens of Pristimantis leopardus sp. nov. A, adult male, MHUA-A 8865, holotype, SVL 17.5 mm; B, adult male, MHUA-A 8858, paratype; C, adult male, MHUA-A 9126, paratype; D, adult male, MHUA-A 8856, paratype; E, adult male, MHUA-A 9127, paratype; F, adult male, MHUA-A 8848, paratype. Photos by José Fang.
FIGURE 1. Maximum clade credibility tree after a partitioned Bayesian analysis using 8945 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 1. Maximum clade credibility tree after a partitioned Bayesian analysis using 8945 sites depicting the phylogenetic relationships among Pristimantis including the Pristimantis leptolophus species group. Numbers on nodes represent posterior probabilities and ultrafast bootstrap (as obtained in the ML analysis) support respectively. Asterisks represent nodal support larger than 95% in both ML and Bayesian analyses. Two dashes in ultrafast bootstrap indicate the node was not recovered in the ML analysis (see Appendix 2 for the ML tree).
FIGURE 3 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 3. Specimens from different species in the Pristimantis leptolophus species group. A, Pristimantis lasalleorum, MHUA-A 8743 (Alto el Junco, Vereda Corcovado, Abriaquí, Antioquia, Colombia), adult male; B, Pristimantis leptolophus, MAR 2771 (Vereda las Mercedes, Corregimiento de Herrera Río Blanco, Tolima, Colombia), adult female; C, Pristimantis maculosus, ICN 55578 (Manizales, Caldas, Colombia), adult male; D, Pristimantis parectatus, MHUA-A 9977 (Páramo de los Cristos, Vereda Chaverras, Sonsón, Antioquia, Colombia) adult female; E, Pristimantis peraticus, MAR 2677, (Vereda Las Mercedes, Corregimiento de Herrera Río Blanco, Tolima, Colombia), adult female; F, Pristimantis scoloblepharus, MHUA-A 8875 (Páramo las Palomas, Vereda Manzanares, Sonsón, Antioquia, Colombia), adult male; G, Pristimantis stictus, (Vereda El Vergel, Marulanda, caldas, Colombia) adult male not collected; H, P. uranobates, MHUA-A 9867 (Páramo Valle Alto, Corregimiento San Félix, Salamina, Caldas, Colombia), adult female. Photos by J.M. Daza (A, D), M. Rivera-Correa (F), Marco Rada (B, E), G. González (C, G). (See Appendix 3 for specimens examined).
FIGURE 6 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 6. Map showing geographic distribution of species in the Pristimantis leptolophus group in Colombia. Pristimantis lasalleorum (green dots), P. leopardus sp. nov. (violet dots), P. leptolophus (yellow triangles), P. maculosus (light brown squares), P. parectatus (red dots), P. peraticus, (pink pentagons), P. scoloblepharus (white pentagons), P. stictus (light blue triangles), P. uranobates (blue squares). For localities see Appendix 4.
FIGURE 7. A in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 7. A, panoramic view of the type locality of Pristimantis leopardus sp. nov., Cerro La Vieja (Sonsón, Antioquia, Colombia); B, typical habitat of Pristimantis leopardus sp. nov.
FIGURE 8 in Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species
FIGURE 8. Specimens of Pristimantis leopardus sp. nov. in their microhabitat (Bromelia sp.). A, individual (not collected) using a phytotelmata; B, individual on the bract of Bromelia sp.
FIGURE 3 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 3. Consensus phylogeny of Ponerinae inferred by MrBayes analysis of ALL_DATA matrix with CAD included for Harpegnathos, showing mean branch lengths. Most outgroups are not shown (the full tree including all outgroups is given in Supp. Fig. S1). Genus groups within Ponerini are demarcated by branch color and by the labels on the right. Branches are colored for the crown groups of all genus groups except Harpegnathos, whose stem branch is also colored to ease visualization. Clade support is indicated by solid (MrBayes BPP = 1.00) and empty (0.95
FIGURE 6 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 6. Comparison of the inferred placements of Harpegnathos (HARP) in MrBayes analyses of (A) the ALL_DATA matrix with CAD 1nt/2nt excluded for Harpegnathos, and (B) the PONERINI_ONLY matrix with CAD 1nt/2nt excluded for Harpegnathos. Outgroups are not shown in A, and the tree is drawn as unrooted despite an inferred root location (indicated). The phylogeny in B is unrooted. Branch colors for genus groups are as in Fig. 3. Clade or bipartition support is indicated by solid circles (MrBayes BPP = 1.00), empty circles (0.95
FIGURE 5 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 5. Phylogeny of Ponerinae inferred by RAxML analysis of the CORE_DATA matrix, with all of CAD excluded for Harpegnathos. Branch colors for genus groups are as in Fig. 3. Clade support and taxon labels are not shown except for genus group abbreviations. Numbers indicate alternative placements of Harpegnathos (bounded clade) evaluated with an SH test (inset table).
FIGURE 8 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 8. Dated phylogeny of Ponerinae showing the geographic distributions of terminal taxa. All outgroups except Paraponera and Tatuidris are excluded. "NEO"/green: New World. "AS"/blue: Asia/Australia. "AF"/red: Africa/Madagascar.
FIGURE 4 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 4. Results of single gene MrBayes analyses of (A) all of CAD, (B) first and second codon positions of CAD, and (C) third codon positions of CAD. Only ponerine taxa are shown, except in C, in which Mystrium (Amblyoponinae, light gray branch) was reconstructed as sister to Platythyrea with low support. Branch colors for genus groups are as in Fig. 3. Clade support and taxon labels are not indicated except for genus group abbreviations (see text).
FIGURE 7 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 7. Dated phylogeny (maximum clade credibility tree with mean node ages) of Ponerinae inferred by BEAST analysis of the ALL_DATA matrix with a 155 Mya root age and with CAD included for Harpegnathos. Genus groups within Ponerini are demarcated by branch color. Clade support values and most outgroups are not shown. K/T: K/T boundary (65 Mya; vertical yellow line). The entire dated phylogeny, including outgroups, is given in Supp. Fig. S6.
FIGURE 1 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 1. Lateral and frontal views of a member of each ponerine tribe: (A-B) Platythyrea pilosula (Platythyreini); (C-D) Thaumatomyrmex cf. cochlearis (Thaumatomyrmecini), (E-F) Ponera selenophora (Ponerini). Photographs courtesy of April Nobile and http://www.antweb.org; provided through a Creative Commons Attribution-Non Commercial 3.0 Unported license: http://creativecommons.org/licenses/by-nc/3.0/.
FIGURE 2 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 2. Consensus cladogram inferred by MrBayes analysis of ALL_DATA data set, showing relationships among ant subfamilies (non-ant outgroups not shown; the full tree is given in Supp. Fig. S1). Subfamilies that have at one time been included in Ponerinae are marked with an asterisk. Clade support is indicated by solid (MrBayes BPP = 1.00) and empty (0.95
FIGURE 2 in Molecular phylogenetics of ponerine ants (Hymenoptera: Formicidae: Ponerinae)
FIGURE 2. Consensus cladogram inferred by MrBayes analysis of ALL _ DATA data set, showing relationships among ant subfamilies (non-ant outgroups not shown; the full tree is given in Supp. Fig. S 1). Subfamilies that have at one time been included in Ponerinae are marked with an asterisk. Clade support is indicated by solid (MrBayes BPP = 1.00) and empty (0.95
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