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2,394 results for “ms”
Supplemental information, code, and data for the MS: Defaunation impacts carbon storage in tropical forests.
<p># MS_Carbon<br /> Supplemental information, code, and data for the MS: <br /> Carolina Bello, Mauro Galetti, Marco A. Pizo, Luiz Fernando S. Magnago, Mariana Ferreira Rocha, Renato A. F. Lima, Carlos A. Peres, Otso Ovaskainen, and Pedro Jordano (2015). Defaunation impacts carbon storage in tropical forests.</p> <p> </p> <p>*Summary*:<br /> Carbon storage is widely acknowledged as one of the most valuable forest ecosystem services. Deforestation, logging, fragmentation and climate change have significant impacts on tropical carbon stocks, however an elusive and yet undetected decrease in carbon storage may be due to defaunation of large seed dispersers. Many large tropical trees with sizeable contributions to carbon stock rely on large vertebrates for seed dispersal and regeneration, yet many of these frugivores are threatened by hunting, illegal trade and habitat loss. We used a large dataset on tree species composition and abundance, seed, fruit and carbon related traits, and plant-animal interactions to estimate the loss of carbon storage capacity of tropical forests in defaunated scenarios. By simulating the local extinction of trees that depend on large frugivores at 31 Atlantic Forest communities, we found that defaunation has the potential to significantly erode carbon storage even when only a small proportion (10%) of large-seeded trees are extirpated.</p> <p> </p>
MS coverage HTT sequence and assessment of the data so far (2016/02/23)
<p>Open lab notebook for project: huntingtin structural studies</p> <p> </p>
Modeling exosome complexes from cross-link MS data
<p>This repository contains the modeling scripts, the ensemble of models, and the results of the analysis for the modeling of the <em>S.cerevisiae</em> exosome complex (named exo10, comprising of Rrp40, Rrp4, Csl4, Rrp45, Rrp46, Rrp42, Rrp43, Mtr3, Ski6 and Rrp44), in presence of Ski7 (exo10+Ski7 below) or Rrp6 (exo10+Rrp6 below) proteins. The modeling is performed based on cross-link Mass-Spectrometry data, crystallographic structures, and comparative models.</p> <p>For more information about how to reproduce this modeling, see https://salilab.org/exosome or the README file.</p>
20211223 CutA directinfusion native MS first try
<p>E.coli CutA was measured with Native MS. First test run to test integrity of the protein under different conditions. </p>
IP-MS, MeCP2 Represses the Activity of Topoisomerase IIβ in Long Neuronal Genes
Open the record for dataset details and reuse information.
2023 Shasta Longo UNR MS Thesis Appendix Tables (A6, A7, and A8)
<p>This dataset contains appendix tables from the Fall 2023 MS Thesis titled "A Study on Magmatic Diversity: Determining the Eocene Magmatic Petrogenesis of Swales Mountain, NV" by Shasta Longo at the University of Nevada, Reno. Descriptions for each table below:</p><p>A6. – Standards (a) and Original Data (b) from Microprobe Amphibole Analyses </p><p>A7. – Zircon Texture classification and abundances</p><p>A8. – Zircon LA-ICP–MS Data</p>
Data for "MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0"
<p>This data set contains reanalyzed data from the "MS2 500 ms" and "MS2 750 ms" workflow <a href="https://doi.org/10.1016/j.mcpro.2022.100219">originally published by Furtwängler et al. 2022</a>. </p><p>The full data set is available on ProteomeXchange via the PRIDE partner repository using ID <a href="https://www.ebi.ac.uk/pride/archive/projects/PXD029320">PXD029320</a>. <br> </p><p>This data set contains, for both workflows </p><ul><li>mzML files</li><li>Output files from analysis with MS Amanda + settings file</li><li>Output files from analysis with MS Amanda in combination with Percolator + settings file</li><li>Percolator pin files</li><li>Output files from analysis with MS²Rescore</li></ul>
HDX-MS raw data for "Structural elucidation of full-length Pfs48/45 in complex with potent mAbs isolated from a naturally exposed individual"
<p>These are the raw files of the HDX-MS data for the paper "Structural elucidation of full-length Pfs48/45 in complex with potent mAbs isolated from a naturally exposed individual."</p><p>Peptide identification files are provided in MGF/MZID, as well as in CSV format. </p>
MALDI-TOF-MS spectra of archaeological eggshell in Central Asia
<p>Spectral data from archaeological eggshell fragments from four archaeological sites in Central Asia (Paykend, Afrasiab, Bash Tepa, Tashbulak and Burial Mound LCD-HA-K7). Samples were cleaned, bleached, demineralized with acid (HCl), followed by filtration, digestion with trypsin and peptide purification using C18 ZipTips. They were run on a Bruker autoflex MALDI-TOF-MS. MzXML raw data files are provided here along with a csv file providing information about the samples.</p>
MALDI-TOF-MS spectra of archaeological bone associated with fishhook manufacture from Moloka'i, Hawai'i, for ZooMS (Zooarchaeology by Mass Spectrometry)
<p>MALDI-TOF-MS spectra for archaeological bone fragments associated with fishhook manufacture from Moloka'i, Hawai'i. All spectra are uploaded in .mzml format. </p>
Imaging MS data of Ciona brain No. 4
<p>Imaging MS data of the Ciona brain. 10 um sections. Apparatus: Bruker rapifleX.</p>
Imaging MS data of Ciona brain No. 3
<p>Imaging MS data of the Ciona brain. 10 um sections. Apparatus: Bruker rapifleX.</p>
Imaging MS data of Ciona brain No. 2
<p>Imaging MS data of the Ciona brain. 10 um sections. Apparatus: Bruker rapifleX.</p>
Raw data for the submitted manuscript entitled "Novel strategies for the determination of plastic additives derived from agricultural plastics in soil using ultrahigh-performance liquid chromatography tandem mass spectrometry (UHPLC-MS/MS)"
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Response of protonated, adduct, and fragmented ions in Vocus proton-transfer-reaction time-of-flight mass (PTR-ToF-MS) spectrometer
<p>Here, we provide the time series and processed results of two sets of experiments: RH experimental results and instrument setting results:</p> <p><a href="../api/records/10947779/draft/files/202305015_E_N_BSQ_RF.pxp/content" target="_blank" rel="noopener noreferrer">202305015_E_N_BSQ_RF.pxp</a>: instrument setting results.</p> <p><a href="../api/records/10947779/draft/files/VOC_PTR_RH_20230427.pxp/content" target="_blank" rel="noopener noreferrer">VOC_PTR_RH_20230427.pxp</a>: RH experimental results.</p> <p><a href="../api/records/10947779/draft/files/VOC_PTR_S_k_20230501.pxp/content" target="_blank" rel="noopener noreferrer">VOC_PTR_S_k_20230501.pxp</a>: k value result analysis</p>
Supplemntary tables S1-S6 related with the article entitled: LC-MS-Based Plasma Proteome Analysis in Nursery Pigs Fed Diets Enriched with Native Chicory Inulin
<p><span>Table S1: Composition of the pig diet: control diet (C) and diets supplemented with 1% (T1) or 3% (T2) of native chicory inulin.; Table S2: Nutrient contents of the control diet (C) and the diets supplemented with 1% (T1) or 3% (T2) of native chicory inulin.; Table S3: Chemical composition (%) of inulin (IN) used as a feed supplement.; Table S4: Porcine plasma proteins submitted for further analysis.; Table S5: Proteins significantly altered in response to the T1 diet.; Table S6: Proteins significantly altered in response to the T2 diet.</span></p>
MATLAB results files of MS-based analysis and raw photometer data - Systematic identification of allosteric effectors in Escherichia coli metabolism
<p>MATLAB result tables from progress curve analysis for each of the 19 enzymes tested with 79 potential effectors metabolites in MS-based approach. Excel tables with labelled photometer data.</p>
Raw GC-ToF-MS and processed data from individuals sampled in allopatric and contact zones and MZmine 3.9.0 and Rstudio analysis
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The traceability of waste compounds from the orange juice industry by NMR and GC-MS techniques
<p>The traceability of waste compounds from the orange juice industry by NMR and GC-MS techniques</p>
Pennyleon caatinganus Stange MS, paratype female, FSCA 00093944
<p><em>Pennyleon caatinganus</em> Stange MS, paratype female, FSCA 00093944</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.