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MERLIN H2020 Project: Video of Faces of MERLIN; Jan Kubczak
<p>Video of Faces of MERLIN; Jan Kubczak, 2019</p>
Ilastik project for Platynereis chromatin segmentation
<p>Ilastik project & associated images used for chromatin segmentation in the publication Whole-body integration of gene expression and single-cell morphology. For details on how this project was used see: https://github.com/platybrowser/platybrowser-backend/tree/master/mmpb/segmentation/chromatin</p> <p>Ilastik - <a href="https://www.ilastik.org/">https://www.ilastik.org/</a> - Berg, S., Kutra, D., Kroeger, T. <em>et al.</em> ilastik: interactive machine learning for (bio)image analysis. <em>Nat Methods</em> <strong>16, </strong>1226–1232 (2019). https://doi.org/10.1038/s41592-019-0582-9</p>
Video2 Dissemination strategy WP10 EcoStack (EU2020) project
<p>Video on farmers favorising biodiversity</p>
Figure 8 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 8 Paraboeremia truiniorum (CBS 144952). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OAH pycnidium I section of pycnidium J section of pycnidial wall K–N conidiogenous cells O conidia. Scale bars: 20 μm (H); 50 μm (I); 5 μm (J–O).
Figure 7 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 7 Paraboeremia rekkeri (CBS 144955). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OAH pycnidium I section of pycnidium J section of pycnidial wall K–N conidiogenous cells O conidia. Scale bars: 100 μm (H); 20 μm (I); 10 μm (J); 5 μm (K–O).
Figure 6 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 6 Nothophoma brennandiae (CBS 145912). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OA. H, I pycnidia J section of pycnidial wall K–M conidiogenous cells N conidia. Scale bars: 50 μm (H, I); 10 μm (J); 5 μm (K–N).
Figure 5 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 5 Juxtiphoma kolkmaniorum (CBS 146005). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidium forming on OAI chlamydospores J–L conidiogenous cells M conidia. Scale bars: 100 μm (G, H); 10 μm (I–M).
Figure 3 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 3 Didymella degraaffiae (CBS 144956). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidia on OAI section of pycnidium J section of pycnidial wall K, L conidiogenous cells M chlamydospores N conidia. Scale bars: 50 μm (H, I); 10 μm (J); 5 μm (K–N).
Figure 4 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 4 Didymella kooimaniorum (CBS 144951). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OAH pycnidia I section of pycnidium J section of pycnidial wall K–M conidiogenous cells N conidia. Scale bars: 100 μm (H); 50 μm (I); 10 μm (J); 5 μm (K–N).
Figure 9 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 9 Stagonosporopsis stuijvenbergii (CBS 144953). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OAH pycnidia I ostiole J–L conidiogenous cells M stromatic hyphal aggregations N conidia. Scale bars: 50 μm (H); 10 μm (I, M); 5 μm (J–L, N).
Figure 13 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 13 Xenodidymella weymaniae (CBS 144960). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidia forming on OAI, J section of pycnidial wall K–N conidiogenous cells O conidia. Scale bars: 50 μm (H); 20 μm (I); 10 μm (J); 5 μm (K–O).
Figure 10 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 10 Stagonosporopsis weymaniae (CBS 144959). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G–I pycnidia forming on OAJ, L conidiogenous cells K subglobose conidia M stromatic hyphal aggregations N chlamydospores O oblong conidia. Scale bars: 100 μm (I); 10 μm (J–N); 5 μm (O).
Figure 12 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 12 Vandijckomycella snoekiae (CBS 144954). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidia forming on OAI, J section of pycnidial wall K–N conidiogenous cells O conidia. Scale bars: 100 μm (H); 50 μm (I); 10 μm (J); 5 μm (K–O).
Figure 11 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 11 Vandijckomycella joseae (CBS 143011). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidia forming on OAI, J section of pycnidial wall K–N conidiogenous cells O conidia. Scale bars: 100 μm (H); 20 μm (I); 10 μm (J); 5 μm (K–O).
Figure 1 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 1 Phylogenetic tree generated from the maximum-likelihood analysis based on the combined ITS, LSU, tub2 and rpb2 sequence alignment of Didymellaceae members. The RAxML bootstrap support values (BS), Bayesian posterior probabilities (PP), and parsimony bootstrap support values (PBS) are given at the nodes (BS/PP/PBS). BS and PBS values represent parsimony bootstrap support values >50 %. Full supported branches are indicated in bold. The scale bar represents the expected number of changes per site. Ex-type strains are represented in bold. Strains obtained in the current study are printed in green; among them, whilst strains that represent new taxa are printed in red. Some of the basal branches were shortened to facilitate layout (the fraction in round parentheses refers to the presented length compared to the actual length of the branch). The tree was rooted to Coniothyrium palmarum CBS 400.71 and Leptosphaeria doliolum CBS 505.75.
Figure 2 from: Hou L, Hernández-Restrepo M, Groenewald JZ, Cai L, Crous PW (2020) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
Figure 2 Ascochyta benningiorum (CBS 144957). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OAH pycnidium I section of pycnidium J section of pycnidial wall K–M conidiogenous cells N conidia. Scale bars: 100 μm (H, I); 10 μm (J); 5 μm (K–N).
Filtered Data from the Retrospective Analysis of Antarctic Tracking Data Project from the Scientific Committee on Antarctic Research
<p>The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research (SCAR) project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. The RAATD project team consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets constitute the compiled tracking data from a large number of research groups that have worked in the Antarctic since the 1990s.<br> <br> This metadata record pertains to the "filtered" version of the data files. These files contain position estimates that have been processed using a state-space model in order to estimate locations at regular time intervals. For technical details of the filtering process, consult the data paper. The filtering code can be found in the https://github.com/SCAR/RAATD repository.<br> <br> This data set comprises one metadata csv file that describes all deployments, along with data files (3 files for each of 17 species). For each species there is:<br> - an RDS file that contains the fitted TMB filter model object and model predictions (this file is RDS format that can be read by the R statistical software package)<br> - a PDF file that shows the quality control results for each individual model<br> - a CSV file containing the interpolated position estimates<br> <br> For details of the file contents and formats, consult the data paper.</p> <p>The original copy of these data are available through the Australian Antarctic Data Centre (https://data.aad.gov.au/metadata/records/SCAR_EGBAMM_RAATD_2018_Filtered)</p> <p><br> The data are also available in a standardized version (see https://data.aad.gov.au/metadata/records/SCAR_EGBAMM_RAATD_2018_Standardised) that contain position estimates as provided by the original data collectors (generally, raw Argos or GPS locations, or estimated GLS locations) without state-space filtering.</p>
PROGRAMS project. Machine tool data from Aurrenak S. Coop. on 2020 Week 12
<p>These data were collected from FIDIA machine tool controller during milling operation.</p> <p> </p>
PROGRAMS project. Machine tool data from Aurrenak S. Coop. on 2020 Week 10
<p>These data were collected from FIDIA machine tool controller during milling operation.</p> <p> </p>
PROGRAMS project. Machine tool data from Aurrenak S. Coop. on 2020 Week 05
<p>These data were collected from FIDIA machine tool controller during milling operation.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.