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11,506 results for “Dynamics”
Figure 5 in First observation and seasonal dynamics of the new invasive planktonic copepod Oithona davisae Ferrari and Orsi, 1984 along the southern Black Sea (Anatolian Coast)
Figure 5. (a) Abundance of Oithona davisae (ind. m−3); (b) abundance of female O. davisae with egg sac (ind. m−3).
Figure 4 in First observation and seasonal dynamics of the new invasive planktonic copepod Oithona davisae Ferrari and Orsi, 1984 along the southern Black Sea (Anatolian Coast)
Figure 4. Photographs of Oithona davisae: (a, b) lateral view of female with egg sac; (c) dorsal view of male; (d) lateral view of urosome; (e) rostrum of female (Photographs by Yildiz and Feyzioglu).
Figure 7 in First observation and seasonal dynamics of the new invasive planktonic copepod Oithona davisae Ferrari and Orsi, 1984 along the southern Black Sea (Anatolian Coast)
Figure 7. Black Sea coastal current system (http://www.ims.metu.edu.tr/cv/oguz/circulation.htm). © Temel Oguz. Reproduced by permission of Temel Oguz. Permission to reuse must be obtained from the rightsholder.
Figure 1 in First observation and seasonal dynamics of the new invasive planktonic copepod Oithona davisae Ferrari and Orsi, 1984 along the southern Black Sea (Anatolian Coast)
Figure 1. (●) Previous report sites of Oithona davisae (Altukhov et al. 2014), (▲) Time series stations and (+) sampling locations.
Multiscale molecular dynamics simulations of human P-glycoprotein in complex lipid bilayer
<p>The topology (gro) and trajectory (xtc) files for multiscale - coarse-grained (CG) and atomistic (AT) molecular dynamics simulations of human P-glycoprotein in complex lipid bilayer. The coarse grained simulations are 10 microseconds long and the trajectories have 1 frame saved at every 10 ns, while the atomistic simulations are 100 ns long and have 2 frames saved at every nanosecond. </p>
Data of 3D MHD Simulation for manuscript "Characteristics of Transpolar Arc Motion and its Corresponding Magnetospheric Dynamic Process"
<p>Data of 3D MHD Simulation for manuscript "Characteristics of Transpolar Arc Motion and its Corresponding Magnetospheric Dynamic Process"</p> <p>There are 6 types of data files:</p> <p>1) -3)MHD simulation results for FAC, plasma density, and temperature, projected at the x = -40RE position, with the viewpoint from the magnetotail towards the earth</p> <p>4) FAC mapping.rar. These data are the parametters in the plane of about Z=0 RE, which were mapped to the 7.2 Re, along the magnetic field lines.</p> <p>5) The simulation results of the model are plotted for FAC on Z=0RE.</p> <p>The results of the above data simulation plot are from 20171115 23:00 UT to 20171116 02:00 UT.</p> <p>6) XXBDd0142.rar, which is full 3D Simulation data at 2017.11.16 01:22 UT;</p> <p>All of these data include the following parameters:</p> <p>time, x, y, z, logrho, Vx, Vy, Vz, Bx, By, Bz, Pr, Jx, Jy, Jz, Edj</p> <p>7) SSUSI data at 2017.11.16.</p> <p> </p>
Data and Code for "Space-time correlations in monitored kinetically constrained discrete-time quantum dynamics"
<div> <pre>This repository contains the source code, notebooks, data and basic figures for the manuscript <br>"Space-time correlations in monitored kinetically constrained discrete-time quantum dynamics". <br><br>Comments welcome. </pre> </div>
Organocatalyzed Atroposelective Dynamic Kinetic Resolutions via Transient Seven-Membered Cyclic Hemiacetals
<p>DFT_optimized structures accompanying the study "Beyond Five- and Six-Membered Ring Intermediates: Transient Seven-Membered Cyclic Hemiacetals for Organocatalyzed Atroposelective Dynamic Kinetic Resolutions", where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...</p> <p>Note: R-3a.xyz corresponds to R-3c.xyz in the manuscript.</p>
TIEGCM results associated with "Dynamics and electrodynamics of an UFKW packet in the ionosphere and thermosphere"
<p>The data set consist of thermosphere-ionosphere-electrodynamics general circulation model (TIEGCM) simulation results used in the publication "Dynamics and electrodynamics of an ultra-fast Kelvin wave (UFKW) packet in the ionosphere and thermosphere" by Forbes et al. Focus is on an eastward-propagating ultra-fast Kelvin wave (UFKW) packet with periods between 2-4 days and zonal wavenumber s = -1 during DOY 266-281, 2009. Two sets of simulations are provided with different lower boundary (97km) conditions: 1. forced by daily and zonal mean (S0) 2. forced by S0 and 2-7days with s=-1 perturbations. For these simulations the solar flux and geomagnetic forcing is held constant. Hourly output is provided of the neutral wind, neutral temperature, NmF2, hmF2, ExB drift and electron density.</p>
Molecular dynamics trajectory videos for high-affinity short peptides targeting BamA protein of Candidatus liberibacter asiaticus
<p>Molecular dynamics trajectory videos and trajectory analysis reports for high-affinity short peptides targeting BamA protein of <em>Candidatus</em> liberibacter asiaticus</p>
Apical Localization of RNA Polymerases Modulate Transcription Dynamics and Supercoiling Domains Revealed by Cryo-ET
<p>Supplementary materials include all particle raw tilts, 3D reconstructions, models, FSC evaluations, statistical data analyses, gel images, and oxDNA molecular dynamics simulations for the manuscript titled "<strong>Apical Localization of RNA Polymerases Modulate Transcription Dynamics and Supercoiling Domains Revealed by Cryo-ET</strong>".</p>
Brittle and Crystal-Plastic Defect Dynamics of Calcite Single Crystals
<p>Dataset for paper containing zip files with images, video files, mechanical and acoustic data for each experiment.</p>
The dataset of the role of dormant propagule banks in shaping eco-evolutionary dynamics of community assembly
<p>Here is the dataset of the simulation data of the role of dormant propagule banks in shaping eco-evolutionary dynamics of community assembly. </p>
A histone methyltransferase-independent function of PRC2 controls small RNA dynamics during programmed DNA elimination in Paramecium
<p><span lang="EN-US">To limit transposable element (TE) mobilization, most eukaryotes have evolved small RNAs to silence TE activity via homology-dependent mechanisms. Small RNAs, 20-30 nucleotides in length, bind to PIWI proteins and guide them to nascent transcripts by sequence complementarity, triggering the recruitment of histone methyltransferase enzymes on chromatin to repress the transcriptional activity of TEs and other repeats. In<span> the ciliate <em>Paramecium tetraurelia</em>,</span> 25-nt scnRNAs corresponding to TEs recruit Polycomb Repressive Complex 2 (PRC2), and trigger their elimination during the formation of the somatic nucleus. Here, we sequenced sRNAs during the entire sexual cycle with unprecedented resolution. Our data confirmed that scnRNAs are produced from the entire germline genome, from TEs and non-TE sequences, during meiosis. Non-TE scnRNAs are selectively degraded, which results in the specific selection of TE-scnRNAs. We demonstrate that PRC2 is essential for the selective degradation of non-TE-scnRNAs, independently of its histone methyltransferase activity. We further show that the PRC2 cofactor Rf4 mediates the physical interaction between the scnRNA-binding protein Ptiwi09 and the zinc finger protein Gtsf1, pointing to an architectural role of PRC2 in scnRNA degradation.</span></p>
Dynamics of island mass effect: detection input & output data
<p>"dynamic_IMEdetection.zip" contains a dynamic island mass effect detection software package.</p> <p>To run:</p> <ul> <li>Unzip "dynamic_IMEdetection.zip"</li> <li>Download input data</li> <li>change path, region to process, and options in "main_dynamicIME_detection.m" to work with the location of the unzipped "dynamic_IME_input_output_data" directory.</li> <li>Run "main_dynamicIME_detection.m"</li> </ul> <p>"dynamic_IME_input_output_data.zip" contains the input data and ouput IME and BO masks of the "dynamic_IMEdetection" software for four case studies:</p> <ul> <li>I04 = Rapa Nui</li> <li>I07 = Society Islands</li> <li>I09 = Samoa</li> <li>I18 = Fiji-Tonga</li> </ul> <p>Input data are custom multi-satellite products computed using the custom-made satellite binning software found here: <a href="../doi/10.5281/zenodo.13376824">10.5281/zenodo.13376824</a>.</p> <p>Output IME and BO masks are computed using the dynamic IME detection software (i.e. "dynamic_IMEdetection") which works with the original naming (i.e. "I04", "I07", "I09", and "I18") and subdirectory path of of the share data "dynamic_IME_input_output_data".</p> <p>Output IME/BO mask, chlorophyll concentration, and modelled surface current timeseries in *.gif format:</p> <ul> <li>RapaNui_8Dbin_20160520-0712_20161205-2230_map-time-series.gif = Rapa Nui between 2016/05/20 and 2016/12/05</li> <li>SocietyIsl_8Dbin_20160622-1012_20170209-0945_map-time-series.gif = Society Islands between 2016/06/22 and 2017/02/09</li> <li>Samoa_8Dbin_20160810-1115_20170226-1030_map-time-series.gif = Samoa between 2016/08/10 and 2017/02/26</li> <li>FijiTonga_8Dbin_20170218-1240_20170906-1205_map-time-series.gif = Fiji - Tonga between 2017/02/18 and 2017/09/06</li> </ul>
The vertical profile of the dynamic TOI from double to single, TIEGCM
<p>The simulation from TIEGCM to explore the roles of IMF By and Bz on the dynamic evolution of TOI from double to single at 300 and 500 km.</p>
Exploring the competitive dynamic enzyme allocation scheme through enzyme cost minimization
<p>The dataset is for the manuscript entitled "Exploring the competitive dynamic enzyme allocation scheme through enzyme cost minimization".</p>
Supplemental data for Structural dynamics of therapeutic nucleic acids with phosphorothioate backbone modification, Carlesso et al.
<p>Description of the parameterization strategy for phosphorothioate-modified therapeutic nucleic acids, and files related to the system preparation, MD trajectories and analysis.</p>
The dynamics of protein-RNA interfaces using all-atom molecular dynamics simulations
<p>We investigated to characterize the dynamics of protein-RNA complexes and their interfaces at molecular level by performing a more systematic analysis. To get insights on the dynamics of protein-RNA complexes, all-atom MD simulations were generated for the manuscript "The dynamics of protein-RNA interfaces using all-atom molecular dynamics simulations". Nine protein-RNA complexes are studied in this work: 1ASY (an aspartyl-tRNA synthase/tRNA), 1JBS (a ribotoxin restrictocin/SRD RNA), 1MMS (a ribosomal protein L11/23S), 1OOA (a nuclear factor NF-kappaB p105 subunit/RNA aptamer), 1RKJ (a nucleolin/pre-rRNA), 2R8S (a FAB/P4-P6 RNA ribozyme domain), 2VPL (a 50S ribosomal protein/mRNA), 2ZM5 (a tRNA delta(2)-isopentenylpyrophosphate transferase/tRNA), 3IEV (a GTP-binding protein era/3' end of 16S rRNA). </p><p>Each folder for a complex is organised as followed:</p><ul><li>in <strong>complex</strong> there are the dry MD simulations for the complex protein-RNA with the starting structure</li><li>in <strong>protein</strong> there are the dry MD simulations for the unbound protein with the starting structure</li><li>in <strong>rna</strong> there are the dry MD simulations for the unbound RNA with the starting structure</li></ul><p>In each folder, all the trajectory files are named : <strong>md_(times of simulations).xtc</strong> and the starting structure called : <strong>start.gro</strong>.</p>
03/04 - Spatial and Amplitude Dynamics of Neurostimulation: Insights from the Acute Intrahippocampal Kainate Seizure Mouse Model
<p>Dataset #3 of 4</p>
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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