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Figure S3 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S3 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S2 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S2 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S4 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S4 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S1 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Figure S1 from: Silva M, Di-Nizo C, Neves C, Fernando Vilela J (2014) New karyologycal data and cytotaxonomic considerations on small mammals from Santa Virgínia (Parque Estadual da Serra do Mar, Atlantic Forest, Brazil). Comparative Cytogenetics 8(1): 11-30. https://doi.org/10.3897/compcytogen.v8i1.6430
Supplementary material 1 from: Zúñiga JD, Gostel MR, Mulcahy DG, Barker K, Hill A, Sedaghatpour M, Vo SQ, Funk VA, Coddington JA (2017) Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution. PhytoKeys 88: 119-122. https://doi.org/10.3897/phytokeys.88.14607
List of samples collected for the Global Genome Initiative for Gardens project selected for DNA barcoding, with GenBank accession numbers and genetic sample identification numbers. All the sequences are included in the GGI-Gardens BioProject. : Explanation note: List of samples collected for the Global Genome Initiative for Gardens project selected for DNA barcoding, with GenBank accession numbers and genetic sample identification numbers.
Supplementary material 2 from: Mertens JEJ, Van Roie M, Merckx J, Dekoninck W (2017) The use of low cost compact cameras with focus stacking functionality in entomological digitization projects. ZooKeys 712: 141-154. https://doi.org/10.3897/zookeys.712.20505
Figure S2 : Explanation note: Comparison of the narrow (C, F), normal (A, B, D, G) and wide (E, H) focal step size in two specimens of different 'depth' (A, C–E: Allochroma sp., 2 mm deep; B, E–H: Doryphora sp., 12 mm deep, measured from top of elytra to lowest tarsi). The narrow setting is marginally sharper in some areas; however, deeper parts of the specimen are not in focus. The wide setting produces artefacts around some of the edges, sometimes resulting in less sharp regions.
Supplementary material 7 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S7 : Explanation note: Mahalanobis distances (MD) between tribal centroids and the 979 specimens, and the fossils and tribal centroids in the tribal dataset.
Supplementary material 6 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S6 : Explanation note: Mahalanobis distances (MD) between subfamilial centroids and the 979 specimens, and the fossils and subfamilial centroids in the tribal dataset.
Supplementary material 3 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S3 : Explanation note: Specimen assignment in tribes using the cross-validation procedure in the LDA of forewing shape in the "Bombus s.l. + comparison groups" dataset. Original groups are along the rows, predicted groups are along the columns. The hit ratio (HR%) is given for each tribe.
Supplementary material 1 from: Mertens JEJ, Van Roie M, Merckx J, Dekoninck W (2017) The use of low cost compact cameras with focus stacking functionality in entomological digitization projects. ZooKeys 712: 141-154. https://doi.org/10.3897/zookeys.712.20505
Figure S1 : Explanation note: Lightbox setup, the camera rests on top of the cut-off bucket, its lens protruding though the hole in the middle. The specimen is usually shielded from direct light by a free-standing cylinder of tracing paper (not depicted). The LED strips on the inside are powered through a 12V adapter.
Supplementary material 2 from: Korshunova T, Martynov A, Bakken T, Evertsen J, Fletcher K, Mudianta WI, Saito H, Lundin K, Schrödl M, Picton B (2017) Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia: aeolidacean taxonomic reassessment with descriptions of several new families, genera, and species (Mollusca, Gastropoda). ZooKeys 717: 1-139. https://doi.org/10.3897/zookeys.717.21885
Table S1 : Explanation note: List of samples, localities, GenBank accession numbers, and voucher references.
Supplementary material 5 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S5 : Explanation note: Mahalanobis distances (MD) between familial centroids and the 979 specimens, and the fossils and familial centroids in the tribal dataset.
Supplementary material 2 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S2 : Explanation note: Second dataset for the geometric morphometric analyses. This sample includes 872 specimens from 247 species, 14 genera, and six tribes of Apidae. N = number of specimens.
Supplementary material 1 from: Moraes LJCL, Almeida AP, Fraga R, Rojas RR, Pirani RM, Silva AAA, de Carvalho VT, Gordo M, Werneck FP (2017) Integrative overview of the herpetofauna from Serra da Mocidade, a granitic mountain range in Northern Brazil . ZooKeys 715: 103-159. https://doi.org/10.3897/zookeys.715.20288
Supplementary material 1 from: Moraes LJCL, Almeida AP, Fraga R, Rojas RR, Pirani RM, Silva AAA, de Carvalho VT, Gordo M, Werneck FP (2017) Integrative overview of the herpetofauna from Serra da Mocidade, a granitic mountain range in Northern Brazil . ZooKeys 715: 103-159. https://doi.org/10.3897/zookeys.715.20288
Supplementary material 4 from: Boenigk J, Wodniok S, Bock C, Beisser D, Hempel C, Grossmann L, Lange A, Jensen M (2018) Geographic distance and mountain ranges structure freshwater protist communities on a European scalе. Metabarcoding and Metagenomics 2: e21519. https://doi.org/10.3897/mbmg.2.21519
Richness is shown for different elevations. The number of lakes within this elevation range is indicated. While mean richness ranges around 750 OTUs it drops to around 400 OTUs at high elevations. The transition seems to be around or slightly below 1400m.
Supplementary material 9 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S9 : Explanation note: Mahalanobis distances (MD) between subgeneric centroids and the 841 specimens, and the fossils and subgeneric centroids in the Bombus s.l. dataset.
Supplementary material 1 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The sequences renamed during the workshop. The INSDC accession number, the original INSDC name, and the new UNITE name are shown :
Supplementary material 3 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The metadata annotations for the sequences that were found in the same SHs as sequences from the built environment :
Supplementary material 1 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S1 : Explanation note: First dataset for geometric morphometric analyses encompassing 988 specimens from 234 species, 141 genera, 53 tribes, 18 subfamilies, and seven families of Anthophila (Apoidea). All included groups have three submarginal cells. N1= number of species; N2 = number of specimens.
Supplementary material 4 from: Prokop J, Dehon M, Michez D, Engel M (2017) An Early Miocene bumble bee from northern Bohemia (Hymenoptera, Apidae). ZooKeys 710: 43-63. https://doi.org/10.3897/zookeys.710.14714
Table S4 : Explanation note: Specimen assignment in subgenera using the cross-validation procedure in the LDA of forewing shape in the dataset of Bombus s.l. Original groups are along the rows, predicted groups are along the columns. The hit ratio (HR%) is given for each subgenus.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.