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FIGURE 6 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 6. Alpheopsis paratrigona sp. nov., male holotype (cl 4.5 mm) from Portobelo, Caribbean coast of Panama (MZUSP 34222): a—left cheliped, lateral; b—same, mesial; c—same, chela, lateral; d—second pereiopod, lateral; e—third pereiopod, lateral; f—fifth pereiopod, lateral.
FIGURE 7 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 7. Alpheopsis paratrigona sp. nov., male (cl 4.0 mm) from Barbuda, Antigua & Barbuda (USNM 135846) [a–i]; ovig. female (cl 4.4 mm) from St. John Island, US Virgin Islands (USNM 134763) [j–l]; male (cl 5.0 mm) from Bermuda (USNM 107089) [m–o]; a—carapace and anterior pleon, lateral; b—same, dorsal; c—anterior region of carapace and frontal appendages, lateral; d—same, dorsal; e—left cheliped, mesial; f—same, chela, mesial; g—same, chela fingers (open), lateral; h—second pereiopod, lateral; i—third pereiopod, lateral; j—anterior region of carapace, lateral; k—left cheliped, mesial; lsame, lateral; m—carapace and anterior pleon, lateral; n—anterior region of carapace and frontal appendages, lateral; o—same, dorsal. Modified from Anker (2001), except for j, k, l (drawings prepared, but not used in Anker 2001).
FIGURE 3 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 3. Alpheopsis trigona (Rathbun, 1901), female (cl 5.5 mm) from Fort Pierce, Florida, USA (MZUSP 34221): aright cheliped, lateral; b—same, mesial (proximal articles detached); c—same, chela, mesial; d—same, chela fingers, lateral; e—second pereiopod, lateral; f—third pereiopod, lateral; g—same, distal propodus and dactylus, lateral; h—fifth pereiopod, lateral.
FIGURE 9 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 9. Alpheopsis paratrigona sp. nov., male holotype (cl 4.5 mm) from Portobelo, Caribbean coast of Panama (MZUSP 34222) [a]; male (cl 4.5 mm) from Carrie Bow Cay, Belize (ULLZ 8939) [b]. Photographs: A. Anker (a) and Darryl L. Felder (b).
FIGURE 16 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 16. Alpheopsis aristoteles sp. nov., male holotype (cl 3.9 mm) from São Tomé, São Tomé & Príncipe, Gulf of Guinea (MZUSP 34508): a—carapace, lateral; b—anterior region of carapace and frontal appendages, lateral; c—detail of pterygostomial angle, lateral; d—anterior region of carapace and frontal appendages, dorsal; e—posterior pleon, lateral; ftelson, dorsal; g—ventromesial tooth on first article of antennular peduncle, lateral; h—third maxilliped, lateral; i—same, tip of ultimate article, lateral; j—same, dorsomesial; k—second pereiopod, lateral; l—third pereiopod, lateral; m—fifth pereiopod, lateral; n—second pleopod, lateral; o—uropod, dorsal.
FIGURE 5 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 5. Alpheopsis paratrigona sp. nov., male holotype (cl 4.5 mm) from Portobelo, Caribbean coast of Panama (MZUSP 34222): a—carapace and anterior pleon, lateral; b—same, dorsal; c—anterior region of carapace and frontal appendages, lateral; d—same, dorsal; e—posterior pleon, lateral; f—telson, dorsal; g—ventromesial tooth on first article of antennular peduncle, lateral; h—third maxilliped, lateral; i—same, tip of ultimate article, mesial; j—second pleopod, lateral; k—uropod, dorsal.
FIGURE 1 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 1. Position of carinae (including crests and ridges) on the carapace and pleon used in this study: ABC—anterior branchiostegial carina; ASC—anterior subdorsal carina; CSR—crescent-shaped ridge; DLC—dorsal lateral carina; MDCmid-dorsal carina of carapace; MDC-PL1—mid-dorsal crest of pleomere 1; MDC-PL2—mid-dorsal crest of pleomere 2; PLC—posterior lateral carina; PSC—posterior subdorsal carina; VLC—ventral lateral carina. See text for more details.
FIGURE 2 in Strongly carinate species of Alpheopsis Coutière, 1897 of the tropical Atlantic and eastern Pacific, with redescription of A. trigona (Rathbun, 1901) and description of three new species (Malacostraca: Decapoda: Alpheidae)
FIGURE 2. Alpheopsis trigona (Rathbun, 1901), female (cl 5.5 mm) from Fort Pierce, Florida, USA (MZUSP 34221): acarapace and anterior pleon, lateral; b—same, dorsal; c—anterior region of carapace and frontal appendages, lateral; d—same, dorsal; e—posterior pleon, lateral; f—telson, dorsal; g—ventromesial tooth on first article of antennular peduncle, lateral; hthird maxilliped, lateral; i—same, tip of ultimate article, mesial; j—uropod, dorsal.
FIGURES 7–8 in Hyleina kaphetea, a new genus and species of clearwing moths from tropical Africa (Lepidoptera: Sesiidae: Sesiini)
FIGURES 7–8. Hyleina kaphetea new gen. & new sp., ♂ paratypes, genitalia structures. b, phallus. c, terminal abdominal segments. 7. Tanzania, Kigoma Territory, Mukuyu Hills east of Kabogo. 8. Congo, Katanga, Lubumbashi. Scale 1 mm.
FIGURES 1–6 in Hyleina kaphetea, a new genus and species of clearwing moths from tropical Africa (Lepidoptera: Sesiidae: Sesiini)
FIGURES 1–6. Hyleina kaphetea new gen. & new sp., ♂ specimens. 1. Holotype (underside right). 2–6. Paratypes. 2. Zambia, Northwest Province, vic. Ikelenge, Hillwood Farm (underside right). 3. Zambia, Northwest Province, Zambezi Rapids. 4. Malawi, Lilongwe District, Dzalanyama Forest. 5. Congo, Katanga, Lubumbashi. 6. Tanzania, Kigoma Territory, Mukuyu Hills east of Kabogo. Scale 10 mm.
FIGURE 3 in Three squat lobsters (Crustacea: Decapoda: Anomura) from tropical West Pacific seamounts, with description of a new species of Uroptychus Henderson, 1888
FIGURE 3. Munidopsis bairdii (Smith, 1884), male, PCL 8.4 mm (A); Munidopsis kensmithi JoneS & MacpherSon, 2007, male, PCL 8.5 mm (B, C). A, B, carapace, dorSal vieW; C, dactyluS of left pereopod 3, lateral vieW. ScaleS equal 1.0 mm.
FIGURE 5. A in Three squat lobsters (Crustacea: Decapoda: Anomura) from tropical West Pacific seamounts, with description of a new species of Uroptychus Henderson, 1888
FIGURE 5. A, in Situ photo of Munidopsis bairdii (Smith, 1884) aSSociated With unknoWn coral, Slope of Pallada Guyot, depth 2280 m; B, in Situ photo of poSSible Munidopsis kensmithi JoneS & MacpherSon, 2007 beSide artificial rubbiSh, polymetallic noduleS Seabed, baSe of Lamont Guyot, depth 4833 m.
FIGURE 4. SpecimenS examined, dorSal vieW. A, Uroptychus inaequipes n in Three squat lobsters (Crustacea: Decapoda: Anomura) from tropical West Pacific seamounts, with description of a new species of Uroptychus Henderson, 1888
FIGURE 4. SpecimenS examined, dorSal vieW. A, Uroptychus inaequipes n. sp., holotype, ovig. female, PCL 9.1 mm, freSh colour; B, Munidopsis bairdii (Smith, 1884), male, PCL 8.4 mm, conServed in ethanol; C, Munidopsis kensmithi JoneS & MacpherSon, 2007, male, PCL 8.5 mm, conServed in ethanol.
FIGURE 2. Uroptychus inaequipes n in Three squat lobsters (Crustacea: Decapoda: Anomura) from tropical West Pacific seamounts, with description of a new species of Uroptychus Henderson, 1888
FIGURE 2. Uroptychus inaequipes n. sp., holotype, ovig. female, PCL 9.1 mm. A, right pereopod 2, lateral vieW; B, right pereopod 3, lateral vieW; C, right pereopod 4, lateral vieW; D, dactyluS and diStal part of right pereopod 2 propoduS, lateral vieW; E, dactyluS of right pereopod 3, lateral vieW; F, dactyluS of right pereopod 4, lateral vieW. Setae omitted on B–F. ScaleS equal 1.0 mm.
FIGURE 1. Uroptychus inaequipes n in Three squat lobsters (Crustacea: Decapoda: Anomura) from tropical West Pacific seamounts, with description of a new species of Uroptychus Henderson, 1888
FIGURE 1. Uroptychus inaequipes n. sp., holotype, ovig. female, PCL 9.1 mm. A, carapace and abdominal tergiteS 1–3, dorSal vieW; B, left pterygoStomian, lateral vieW; C, Sternal plaStron, ventral vieW; D, telSon, extenSor vieW; E, left antennal peduncle, ventral vieW; F, left third maxilliped, ventral vieW; G, left criSta dentata, ventral vieW; H, right cheliped, dorSal vieW; I, right cheliped iSchium and baSiS, ventrolateral vieW. ScaleS equal 1.0 mm.
Data and Code for Tropical Cyclone Seed Disturbances in ERA5
<p>Data used in the paper titled "Tropical Cyclone Seed Disturbances in ERA5" by Moon et al.</p> <p>The dataset consists of tracking and track files, with tracking conducted using TempestExtremes and NCL.</p> <p> </p> <p>The track dataset is available in two versions, depending on the reference dataset used for matching (ERA5TC and IBTrACS)</p> <p> </p>
Landfalling Tropical Cyclones (all_LTC) shear x motion
850-200 hPa environmental shear and motion vectors of 72 landfalling tropical cyclones presented in Trier et al. 2023.
Data analysis scripts for Marsh et al. 2024 'Tropical forest clearance impacts biodiversity and function whereas logging changes structure'
<p>Data analysis scripts for the manuscript <strong>Marsh<em> </em>et<em> </em>al. 2024 'Tropical forest clearance impacts biodiversity and function whereas logging changes structure'</strong></p> <p><strong>Update for Version 2:</strong> The calculation of confidence intervals around the mean effects in Figure 2 has been updated to use the <code>marginaleffects</code> package (many thanks to Biao Wang and Shuang Zhang for pointing out an error in the original code). Using the Satterthwaite method for determining degrees of freedom, the updated confidence intervals are around 32% smaller than our original estimates (MLF = 32.0%, HLF = 32.1%, OP = 21.6%). Note, this change is only relevant to fig. 2 and figs. S2-4; the mean effect sizes and trends along the disturbance gradient, all statistical comparisons, and the constrast analyses in fig. 3 remain unaffected. The updated figures S2-4 and Table S6 can be seen in the file 'Updated figures S2-4 with recalculated confidence intervals.pdf'.</p> <p>In the zip file 'BALI_synthesis_analysis.zip' there are outputs from RMarkdown scripts that include all steps of the analysis for each dataset, including R code, incorporating data visualisation, exploration and standardisation, model building and evaluation, and visualisation of results. Fig. 2b can be regenerated using code in the zip file 'Marsh_etal_2024_Science_fig1b_chm_and_canopy_profiles-main.zip'.</p> <p>Each dataset presented in the manuscript has an html file within the folder 'Analyses'. For datasets involving bat, bird, dung beetle and tree traits additional markdown documents are available for steps take during data preparation in the folder 'Data preparation'.</p> <p>In the zip file 'BALI_synthesis_data.zip' are .rds data files that have been cleaned, prepared and z-score standardised following the procedures outlined in the respective markdown files.</p> <p>To repeat any given analysis, follow the respective rmarkdown document, excluding the data manipulation steps:</p> <ol> <li>Read in the data file as described above: dd <- readRDS(paste0("path/to/rds/file/", "name_of_file.rds"))</li> <li>Run the code at the top of the markdown workflow (sections "Data information" and "Load in necessary libraries")</li> <li>Do not run the sections "Read in data" through to "Visual inspection of the data"</li> <li>Continue the analysis from the 'Modelling' section</li> </ol> <div> <h3> </h3> <h3>Level 1 - Structure & Environment</h3> </div> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> <th>Collector</th> </tr> </tbody> <tbody> <tr> <td>Above-ground carbon</td> <td>Above ground carbon</td> <td>Above_ground_carbon</td> <td>Terhi Riutta</td> </tr> <tr> <td>Leaf-area index</td> <td>Leaf-area index</td> <td>Leaf_area_index</td> <td>Terhi Riutta</td> </tr> <tr> <td>Soil temperature</td> <td>Soil temp.</td> <td>Soil_temperature</td> <td>Terhi Riutta</td> </tr> <tr> <td>Soil moisture</td> <td>Soil moisture</td> <td>Soil_moisture</td> <td>Dafydd Elias</td> </tr> <tr> <td>Air temperature: Minimum</td> <td>Air temp.: Min.</td> <td>Air_temperature_minimum</td> <td>Benjamin Blonder</td> </tr> <tr> <td>Air temperature: Mean</td> <td>Air temp.: Mean</td> <td>Air_temperature_mean</td> <td>Benjamin Blonder</td> </tr> <tr> <td>Air temperature: Maximum</td> <td>Air temp.: Max.</td> <td>Air_temperature_maximum</td> <td>Benjamin Blonder</td> </tr> <tr> <td>Soil bulk density</td> <td>Soil bulk density</td> <td>Soil_bulk_density</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil horizon depth</td> <td>Soil horizon depth</td> <td>Soil_horizon_depth</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil pH</td> <td>Soil pH</td> <td>Soil_pH</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil nutrients: Carbon</td> <td>Soil nutrients (C)</td> <td>Soil_nutrients_C</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil nutrients: Nitrogen</td> <td>Soil nutrients (N)</td> <td>Soil_nutrients_N</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil nutrients: Inorganic Phosporous</td> <td>Soil nutrients (Inorganic P)</td> <td>Soil_nutrients_Inorganic_P</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil nutrients: Carbon:Phosphorous</td> <td>Soil nutrients (C:P)</td> <td>Soil_nutrients_C_P</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil nutrients: Carbon:Nitrogen</td> <td>Soil nutrients (C:N)</td> <td>Soil_nutrients_C_N</td> <td>Dafydd Elias</td> </tr> </tbody> </table> <div> <h3> </h3> <h3>Level 2 - Tree traits</h3> </div> <p>All tree traits were collected as part of the following study (details in this table have been extracted from table S1 of that publication): S. Both, T. Riutta, C.E.T. Paine, D.M.O. Elias, R.S. Cruz, A. Jain, D. Johnson, U.H. Kritzler, M. Kuntz, N. Majalap-Lee, N. Mielke, M.X. Montoya Pillco, N.J. Ostle, Y. Arn Teh, Y. Malhi, D.F.R.P. Burslem (2019) Logging and soil nutrients independently explain plant trait expression in tropical forests. New Phytologist. 221:4, 1853–1865.</p> <p> </p> <p><em><strong>Photosynthesis Traits</strong></em></p> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> </tr> </tbody> <tbody> <tr> <td>Aggregated photosynthesis traits</td> <td>Photosyn. traits</td> <td>Photosynthesis traits</td> </tr> <tr> <td>δ<sup>13</sup>C</td> <td>δ<sup>13</sup>C</td> <td>Traits_13C</td> </tr> <tr> <td>Light-saturated photosynthetic rate</td> <td>Photosyn. rate: A<sub>sat</sub></td> <td>Traits_Asat</td> </tr> <tr> <td>Maximum photosynthetic rate</td> <td>Photosyn. rate: A<sub>max</sub></td> <td>Traits_Amax</td> </tr> <tr> <td>Maximum photosynthetic rate: Nitrogen concentration</td> <td>Max. photosyn. rate: N(%)</td> <td>Traits_N_conc</td> </tr> <tr> <td>Maximum photosynthetic rate: Phosphorous mass (area)</td> <td>Max. photosyn. rate: P(mass)</td> <td>Traits_Phos_area</td> </tr> <tr> <td>Dark respiration (Rd)</td> <td>Dark respiration</td> <td>Traits_Dark_resp</td> </tr> <tr> <td>Specific leaf area (SLA)</td> <td>Specific leaf area</td> <td>Traits_SLA</td> </tr> <tr> <td>Carotenoids (area)</td> <td>Carotenoids: Area</td> <td>Traits_Carot_area</td> </tr> <tr> <td>Carotenoids (mass)</td> <td>Carotenoids: Mass</td> <td>Traits_Carot_mass</td> </tr> <tr> <td>Chlorophyll a (area)</td> <td>Chlorophyll a: Area</td> <td>Traits_Chl_a_area</td> </tr> <tr> <td>Chlorophyll a (mass)</td> <td>Chlorophyll a: Mass</td> <td>Traits_Chl_a_mass</td> </tr> <tr> <td>Chlorophyll b (area)</td> <td>Chlorophyll b: Area</td> <td>Traits_Chl_b_area</td> </tr> <tr> <td>Chlorophyll b (mass)</td> <td>Chlorophyll b: Mass</td> <td>Traits_Chl_b_mass</td> </tr> </tbody> </table> <p> </p> <p><em><strong>Nutrient Traits</strong></em></p> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> </tr> </tbody> <tbody> <tr> <td>Aggregated nutrient traits</td> <td>Nutrient traits</td> <td>Nutrient_traits</td> </tr> <tr> <td>δ<sup>15</sup>N</td> <td>δ<sup>15</sup>N</td> <td>Traits_15N</td> </tr> <tr> <td>Carbon concentration</td> <td>Carbon conc.</td> <td>Traits_Carbon_conc</td> </tr> <tr> <td>Nitrogen concentration</td> <td>Max. photosyn. rate: N(%)</td> <td>Traits_N_perc</td> </tr> <tr> <td>Phosphorous concentration</td> <td>Max. photosyn. rate: P(mass)</td> <td>Traits_Phos_mass</td> </tr> <tr> <td>Magnesium concentration</td> <td>Regulat. nutrients: Total Mg</td> <td>Traits_Total_Mg</td> </tr> <tr> <td>Potassium concentration</td> <td>Regulat. nutrients: Total K</td> <td>Traits_Total_K</td> </tr> <tr> <td>Calcium concentration</td> <td>Regulat. nutrients: Total Ca</td> <td>Traits_Total_Ca</td> </tr> </tbody> </table> <p> </p> <p><em><strong>Structural Traits</strong></em></p> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> </tr> </tbody> <tbody> <tr> <td>Aggregated structural traits</td> <td>Structural traits</td> <td>Structural_traits</td> </tr> <tr> <td>Branch specific density</td> <td>Branch wood density</td> <td>Traits_Branch_WD</td> </tr> <tr> <td>Leaf cellulose concentration</td> <td>Leaf fibre conc.: Cellul.</td> <td>Traits_Cellulose</td> </tr> <tr> <td>Leaf lignin concentration</td> <td>Leaf fibre conc.: Lignin</td> <td>Traits_Lignin</td> </tr> <tr> <td>Leaf hemicellulose concentration</td> <td>Leaf fibre conc.: Hemicel.</td> <td>Traits_Hemicellulose</td> </tr> <tr> <td>Leaf area</td> <td>Leaf size: Area</td> <td>Traits_Leaf_area</td> </tr> <tr> <td>Leaf dry weight</td> <td>Leaf size: Dry wgt</td> <td>Traits_Dry_weight</td> </tr> <tr> <td>Leaf force to punch</td> <td>Leaf strength: Tough.</td> <td>Traits_Leaf_toughness</td> </tr> <tr> <td>Leaf thickness</td> <td>Leaf strength: Thick.</td> <td>Traits_Leaf_thickness</td> </tr> <tr> <td>Leaf dry matter content</td> <td>Leaf strength: Dry mat.</td> <td>Traits_LDMC</td> </tr> <tr> <td>Total phenol concentration</td> <td>Leaf defence: Phenol</td> <td>Traits_Phenol</td> </tr> <tr> <td>Total tannin concentration</td> <td>Leaf defenct: Tannin</td> <td>Traits_Tannin</td> </tr> </tbody> </table> <div> <h3> </h3> <h3>Level 3 - Biodiversity</h3> </div> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> <th>Collector</th> </tr> </tbody> <tbody> <tr> <td>Soil bacterial richness</td> <td>Soil microbial richness: Bacteria</td> <td>Soil_richness_Bacteria</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil protist richness</td> <td>Soil microbial richness: Protists</td> <td>Soil_richness_Protist</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil ectomycorrhizal richness</td> <td>Soil fungal richness: Ectomycorrhiza</td> <td>Soil_richness_Ectomycorrhiza</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil fungal richness</td> <td>Soil fungal richness: Fungi</td> <td>Soil_richness_Fungi</td> <td>Dafydd Elias</td> </tr> <tr> <td>Soil arbuscular mycorrhizal richness</td> <td>Soil fungal richness: Arbuscular mycorrhiza</td> <td>Soil_richness_Arbuscular_mycorrhizal</td> <td>Dafydd Elias</td> </tr> <tr> <td>Leaf spectral diversity</td> <td>Spectral diversity</td> <td>Spectral_diversity</td> <td>Matheus Nunes</td> </tr> <tr> <td>Liana abundance</td> <td>Liana abundance</td> <td>Liana_abundance</td> <td>Boris Bongalov</td> </tr> <tr> <td>Dung beetle abundance</td> <td>Dung beetle abund.</td> <td>Dung_beetle_abundance</td> <td>Eleanor Slade</td> </tr> <tr> <td>Dung beetle diversity: richness</td> <td>Dung beetle diversity: q=0</td> <td>Dung_beetle_diversity_q=0</td> <td>Eleanor Slade</td> </tr> <tr> <td>Dung beetle diversity: Shannon diversity</td> <td>Dung beetle diversity: q=1</td> <td>Dung_beetle_diversity_q=1</td> <td>Eleanor Slade</td> </tr> <tr> <td>Dung beetle diversity: Simpson diversity</td> <td>Dung beetle diversity: q=2</td> <td>Dung_beetle_diversity_q=2</td> <td>Eleanor Slade</td> </tr> <tr> <td>Bird abundance</td> <td>Bird abund.</td> <td>Bird_abundance</td> <td>Simon Mitchell</td> </tr> <tr> <td>Bird diversity: richness</td> <td>Bird diversity: q=0</td> <td>Bird_diversity_q=0</td> <td>Simon Mitchell</td> </tr> <tr> <td>Bird diversity: Shannon diversity</td> <td>Bird diversity: q=1</td> <td>Bird_diversity_q=1</td> <td>Simon Mitchell</td> </tr> <tr> <td>Bird diversity: Simpsons diversity</td> <td>Bird diversity: q=2</td> <td>Bird_diversity_q=2</td> <td>Simon Mitchell</td> </tr> <tr> <td>Bat abundance</td> <td>Bat abund.</td> <td>Bat_abundance</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat diversity (small scale)</td> <td>Bat diversity (sm scale)</td> <td>Bat_diversity_small_scale</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat diversity (large scale): richness</td> <td>Bat diversity (lg scale): q=0</td> <td>Bat_diversity_large_scale_q=0</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat diversity (large scale): Shannon diversity</td> <td>Bat diversity (lg scale): q=1</td> <td>Bat_diversity_large_scale_q=1</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat diversity (large scale): Simpson diversity</td> <td>Bat diversity (lg scale): q=2</td> <td>Bat_diversity_large_scale_q=2</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat β-diversity: Nestedness</td> <td>Bat β-diversity: Nested.</td> <td>Bat_beta_diversity_Nestedness</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat β-diversity: Turnover</td> <td>Bat β-diversity: Turn.</td> <td>Bat_beta_diversity_Turnover</td> <td>David Hemprich-Bennett</td> </tr> <tr> <td>Bat β-diversity: Total</td> <td>Bat β-diversity: Total</td> <td>Bat_beta_diversity_Total</td> <td>David Hemprich-Bennett</td> </tr> </tbody> </table> <div> <h3> </h3> <h3>Level 4 - Functioning</h3> </div> <table> <tbody> <tr> <th>Dataset</th> <th>Label</th> <th>Filename</th> <th>Collector</th> </tr> </tbody> <tbody> <tr> <td>Soil respiration</td> <td>Respiration: Soil</td> <td>Soil_respiration</td> <td>Terhi Riutta</td> </tr> <tr> <td>Stem respiration</td> <td>Respiration: Stem</td> <td>Stem_respiration</td> <td>Terhi Riutta</td> </tr> <tr> <td>Net primary productivity</td> <td>NPP</td> <td>NPP</td> <td>Terhi Riutta</td> </tr> <tr> <td>Litterfall</td> <td>Litterfall</td> <td>Litterfall</td> <td>Terhi Riutta</td> </tr> <tr> <td>Leaf litter decomposition</td> <td>Litter decomposition</td> <td>Litter_decomposition</td> <td>Sabine Both</td> </tr> <tr> <td>Soil mycelial production</td> <td>Mycelial production</td> <td>Hyphal_length</td> <td>Samuel Robinson</td> </tr> <tr> <td>Dung removal</td> <td>Dung removal</td> <td>Dung_removal</td> <td>Eleanor Slade</td> </tr> </tbody> </table> <p> </p> <h2>Funding</h2> <p>Analyses were carried out, and data were collected, as part of the BALI (Biodiversity And Land-use Impacts on tropical ecosystem function) and LOMBOK (Land-use Options for Maintaining BiOdiversity & eKosystem functions) projects using the following funding:</p> <ul> <li>NERC Human-modified Tropical Forests Programme (NE/K016377/1, NE/K016261/1, NE/K016148/1, NE/K016407/1);</li> <li>NERC grant (NE/I028068/1);</li> <li>British Ecological Society Small Ecological Project Grant (No.: 3256/4035);</li> <li>Varley-Gradwell Travelling Fellowship in Insect Ecology;</li> <li>Bat Conservation International Student Research Scholarship;</li> <li>NOMIS Foundation;</li> <li>ERC European Union's Horizon 2020 research and innovation programme (grant agreement No 865403);</li> <li>ERC Advanced Investigator Grant, GEM-TRAIT (321131);</li> <li>The SAFE Project is funded by the Sime Darby Foundation.</li> </ul>
Tropical Cyclones in Global Storm-Resolving Models
This dataset contains information about the tropical cyclones simulated by nine global storm-resolving models (global storm-resolving models are global models with a horizontal resolution of < 5 km). The dataset contains two distinct data sources: (1) track files, which contain information about TC position, intensity, and size. (2) gridded data files with radius-height composites of the TC dynamic and thermodynamic structure. There is one track file and one gridded data file for each model. The overall dataset is part of the global storm-resolving model intercomparison project "DYAMOND" (Stevens et al. 2019, https://link.springer.com/article/10.1186/s40645-019-0304-z), and has been used in a study that is currently under review.
Data for GRL Article "Resolved Convection Improves the Representation of Equatorial Waves and Tropical Rainfall Variability in a Global Nonhydrostatic Model"
This repository contains mandatory material to reproduce the results of the GRL article "Resolved Convection Improves the Representation of Equatorial Waves and Tropical Rainfall Variability in a Global Nonhydrostatic Model" [Paper #2021GL093265RR].
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.