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11,506 results for “Dynamics”
Visualization of bipolar lightning discharge development revealing the reversal point dynamics
<p><span>This repository contains two video files corresponding to model realizations reported in the paper (for the cases of an upward and a downward positive leader) along with their textual description. </span></p>
Interview Corpora for the Study of Multilingual Repertoires in South-South Migration Dynamics I: Haitians in Chapecó (SC, Brazil)
<p>Corpus of 19 multilingual interviews with Haitian migrants in Chapecó (Santa Catarina, Brazil), conducted in various languages: in order from the most to the least documented in the interviews, Portuguese, French, Spanish, and Haitian Creole. This corpus is part of broader research on the evolution of multilingual repertoires in South-South migration dynamics. The interviews were conducted in March 2023 by the author in collaboration with Leonie Ette (University of Augsburg) and the two coordinators of the research group <em>Atlas das Línguas em Contato na Fronteira</em>, Professors Cristiane Horst and Marcelo Krug (UFFS, Campus Chapecó).</p>
Data for "Neutron scattering and neural-network quantum molecular dynamics investigation of the vibrations of ammonia along the solid-to-liquid transition"
<p>Data for "Neutron scattering and neural-network quantum molecular dynamics investigation of the vibrations of ammonia along the solid-to-liquid transition".</p> <p>neutron_data.zip --> neutron data in .nxspe form. S(Q,E) calculated using the DAVE software. Includes logbook spreadsheet. </p> <p>Training_Data.xyz --> xyz file containing training data used to generate Allegro machine learning forcefield in the paper</p> <p>nh3_pimd.deploy --> Trained Allegro model to that can be used in LAMMPS and RXMD software a ML forcefield </p> <p>POSCAR_UNIT_CELL_AMMONIA --> NH3 unit cell in solid phase in POSCAR format that can be read by the VASP software used to perform the DFT simmulations.</p>
Supplementary data: Predicting grid frequency short-term dynamics with Gaussian processes and sequence modeling
<p>This repository contains data and result files for the paper "Predicting grid frequency short-term dynamics with Gaussian processes and sequence modelling". The code to generate the models and reproduce the results of the comparative study in the above paper is available on this <a href="https://github.com/bolin-liu/sequence-model-and-gaussian-process-for-frequency-prediction">github repository</a></p> <p><strong>Supplementary data</strong>:</p> <p>- The <strong>trained_models</strong> folder contains the results of the trained models.</p> <p>- The folder <strong>data</strong> contains data needed for for the comparative study for the year 2019 in the paper above. This data set (except knn_point_predictions.npy) is generated with the code in this <a href="https://github.com/johkruse/PIML-for-grid-frequency-modelling">github repository</a>. knn_point_predictions.npy is generated with the code in this <a href="https://github.com/bolin-liu/sequence-model-and-gaussian-process-for-frequency-prediction">github repository </a>.</p>
First- and second-order phase transitions in electronic excitable units and neural dynamics under global inhibitory feedback
<p>These are experimental time series and video data for an electronic model of neural dynamics consisting of a bi-dimensional array of neon glow lamps, where global inhibition can be simply introduced through a resistor in series with the supply voltage. They are provided to support the replication of the results reported in the associated publication, as well as any further public-domain academic research in the field of neural dynamics, nonlinear electronic circuits, and related aspects, in compliance with the specified license terms and all applicable legal clauses.</p> <p>The following reference must be cited when using these data:</p> <p>Minati L, Scarpetta S, Andelic M, Valdes-Sosa PA, Ricci L, de Candia A, First- and second-order phase transitions in electronic excitable units and neural dynamics under global inhibitory feedback, Chaos, Solitons and Fractals 182 (2024) 114701, DOI https://doi.org/10.1016/j.chaos.2024.114701.</p> <p>L.M. gratefully acknowledges the support of the ``Hundred Talents'' program of the University of Electronic Science and Technology of China, and the support of the ``Excellent Young Scientists Fund Program (Overseas)'' program of the National Natural Science Foundation of China. All experimental activities were self-funded and conducted by L.M. during the period 2020--2021 using own independent assets located in Grigno TN, Italy; the manuscript was later finalized after joining the University of Electronic Science and Technology of China, to which no equipment was transferred. This work has been supported by the Chengdu Science and Technology Bureau Program under Grant 2022GH02-00042-HZ and the CNS program of UESTC No. Y0301902610100201. The authors are grateful to Gabriele Brugnoni of DVE Progettazione Elettronica (Casciago VA, Italy) for essential workshop and manufacturing support.</p>
Identification of Potential IL4I1 Inhibitors through Structure-Based Virtual Screening and Molecular Dynamics Simulations, Molecular dynamics trajectory file
<p>Dataset for molecular dynamics simulations of the article: Identification of Potential IL4I1 Inhibitors through Structure-Based Virtual Screening and Molecular Dynamics Simulations.</p> <p><a href="../api/records/10473570/draft/files/First_600ns_MD.rar/content" target="_blank" rel="noopener noreferrer">First_600ns_MD.rar</a> contains the 600ns molecular dynamics simulation trajectory file of IL4I1-FAD-CIT complex using desmond.</p> <p><a href="../api/records/10473570/draft/files/Second_500ns_MD_ZL35_F963.rar/content" target="_blank" rel="noopener">Second_500ns_MD_ZL35_F963.rar </a>contains the 500ns molecular dynamics simulation trajectory file of IL4I1-FAD-ZL35 complex, which initial conformation of this part of dynamics simulation was obtained by docking the conformation of the 963rd frame from the first dynamics simulation with ZL35 through induced fit.</p> <p>script.rar include scripts and calculation methods for free energy landscape, RMSD matrix, and thermol MM/GBSA.</p>
Molecular dynamics simulation of a pentameric ligand-gated ion channel DeCLIC
<p>Molecular dynamics simulation trajectories, parameter files for a bacterial pentameric ligand-gated ion channel DeCLIC, in the system with 150mM CaCl2 or NaCl2.</p>
Influence of Molecular Hydrogen on Bulk and Interfacial Properties of Three Imidazolium-Based Ionic Liquids by Experiments and Molecular Dynamics Simulations
<p>Original materials including both experimental and simulation data.</p> <p>Pictures (.bmp) of pendant drop method and the surface light scattering signals (.asc).<br>Raw simulation data for the surface tension. The topology files and all the final structure files(.gro) are included for the two systems at all studied temperature and pressures.</p>
Supporting data for Dynamic manganese cycling in the Northern Gulf of Mexico
Open the record for dataset details and reuse information.
Machine Learning Guided Optimization of Dynamic Peptide Organocatalysts
<p>Associated data for publication "<strong>Machine Learning Guided Optimization of Dynamic Peptide Organocatalysts". </strong>Full description of the dataset is in the SI of the associated manuscript. </p>
Data and code for Causality analysis and prediction of riverine algal blooms by combining empirical dynamic modeling and machine learning techniques
<p>Hydrological data (including daily water levels, flow velocities, and streamflow discharges) from two hydrological stations, the Hankou Station in the Yangtze River (YR) and the Hanchuan Station in the Han River (HR), were obtained from Hubei Province Hydrology and Water Resources Center.</p> <p>Water quality data (i.e., total nitrogen (TOTN), total phosphorus (TOTP), and water temperature in the Han River) and algae densities at three sections (Baihezui, Qinduankou and Zongguan) were acquired from the Yangtze River Basin Ecological and Environmental Supervision Authority. </p> <p><span>The R script(s) for machine learning models can also be found at <a href="../api/records/10901736/draft/files/Code%20for%20machine%20learning%20classification%20model.R/content" target="_blank" rel="noopener noreferrer">Code for machine learning classification model.R</a>.</span></p> <p> </p>
UAS Trajectory Model Dynamics at different flight heights: An In-depth Analysis of PPK Georeferencing Results for an Urban Area
<p>In-depth analysis of the PPK georeferencing results when using three different Continuously Operating Reference Station (CORS) stations and one local base station.</p>
Multiple Parameter Replica Exchange Gaussian Accelerated Molecular Dynamics for Enhanced Sampling and Free Energy Calculation of Biomolecular Systems
Open the record for dataset details and reuse information.
Supporting datasets for the article Using rare event algorithms to understand the statistics and dynamics of extreme heatwave seasons in South Asia
<h3>Supporting datasets for the article<em><strong> Using rare event algorithms to understand the statistics and dynamics of extreme heatwave seasons in South Asia, </strong></em>submitted to <em>Environmental Research: Climate</em></h3> <p> </p> <p>The dataset contains all intermediate data used for the article. The raw outputs of the model may be available upon reasonable request to clement.lpr@gmail.com</p> <p>The climate model Plasim can be downloaded, together with its documentation, from the webpage of the « Theoretische Meteorologie » group at the University of Hamburg: <a href="https://www.mi.uni-hamburg.de/en/arbeitsgruppen/theoretische-meteorologie/modelle/plasim.html">https://www.mi.uni-hamburg.de/en/arbeitsgruppen/theoretische-meteorologie/modelle/plasim.html</a></p> <p>The three jupyter notebooks <a href="../api/records/10888194/draft/files/Figures_article_archive.ipynb/content" target="_blank" rel="noopener noreferrer">Figures_article_archive.ipynb</a>, <a href="../api/records/10888194/draft/files/Zg500_maps_article_archive.ipynb/content" target="_blank" rel="noopener noreferrer">Zg500_maps_article_archive.ipynb</a>, <a href="../api/records/10888194/draft/files/Correlation_maps_3days_ERA5_Plasim_archive.ipynb/content" target="_blank" rel="noopener noreferrer">Correlation_maps_3days_ERA5_Plasim_archive.ipynb</a> contain the analysis and code used to produce the figures in the article.</p> <p><strong><a href="../api/records/10888194/draft/files/pyscripts.tar/content" target="_blank" rel="noopener noreferrer">pyscripts.tar</a> </strong>contains 4 python utilities, <em>data_proceeding_module.py, plot_routines.py, subseasonal_stats_utilities.py, utilities_REA_analysis.py </em>that are imported by the notebooks.</p>
Raw data of the publication ''Radical' differences between two FLIM microscopes affect interpretation of cell signaling dynamics'
<p>Raw data and data used to create the figures.</p>
Supporting Software Maintenance with Dynamically Generated Document Hierarchies
Open the record for dataset details and reuse information.
Supplementary Movie 1 from: A genetically encoded biosensor to monitor dynamic changes of c-di-GMP with high temporal resolution
<p>This record contains<strong> Supplementary Movie 1</strong> from:</p> <p><strong>A genetically encoded biosensor to monitor dynamic changes of c-di-GMP with high temporal resolution</strong></p> <p>Andreas Kaczmarczyk, Simon van Vliet, Roman Peter Jakob, Raphael Dias Teixeira, Inga Scheidat, Alberto Reinders, Alexander Klotz, Timm Maier, Urs Jenal</p> <p>Biozentrum, University of Basel, 4056 Basel, Switzerland</p> <p>Correspondence to: urs.jenal[at]unibas.ch, andreas.kaczmarczyk[at]unibas.ch</p> <p> </p>
Dynamic conformational changes of acid-sensing ion channels in different desensitizing conditions
<p>Peer-reviewed manuscript, supplemental file, and source data related to the article 'Dynamic conformational changes of acid-sensing ion channels in different desensitizing conditions'.</p>
Supporting Information for "Tetrazole-functionalized Organoboranes Exhibiting Dynamic Intramolecular N→B-Coordination and Cyanide-selective Anion Bin"
<p>Abstract: Starting from two different cyano-functionalized organoboranes, we demonstrate that 1,3-dipolar [3+2] azide-nitrile cy-cloaddition can serve to generate libraries of alkyl-tetrazole-functionalized compounds capable of intramolecular NB-Lewis adduct formation. Due to the lower basicity of tetrazoles, structures can be generated that exhibit weak and labile NB-coordination. The reaction furnishes 1- and 2-alkylated regio-isomers that exhibit different effective Lewis-acidities at the boron centers, and vary in their optical absorption and fluorescence properties. Indeed, we identified derivatives capable of selectively binding cyanide over fluoride, as confirmed by 11B NMR. This finding demonstrates the potentialities of this synthetic strategy to systematically finetune the properties of lead structures that are of interest as chemical sensors.</p> <p>Content:</p> <ul> <li>Output filed from Computational Studies</li> <li>Raw data and Analysis from Fluorescence Titrations</li> <li>Crystal data</li> <li>ESI file in .pdf format containing experimental procedures and analytical data.</li> </ul>
Supporting Information for "Tetrazole-functionalized Organoboranes Exhibiting Dynamic Intramolecular N→B-Coordination and Cyanide-selective Anion Bin"
<p>Abstract: Starting from two different cyano-functionalized organoboranes, we demonstrate that 1,3-dipolar [3+2] azide-nitrile cy-cloaddition can serve to generate libraries of alkyl-tetrazole-functionalized compounds capable of intramolecular NB-Lewis adduct formation. Due to the lower basicity of tetrazoles, structures can be generated that exhibit weak and labile NB-coordination. The reaction furnishes 1- and 2-alkylated regio-isomers that exhibit different effective Lewis-acidities at the boron centers, and vary in their optical absorption and fluorescence properties. Indeed, we identified derivatives capable of selectively binding cyanide over fluoride, as confirmed by 11B NMR. This finding demonstrates the potentialities of this synthetic strategy to systematically finetune the properties of lead structures that are of interest as chemical sensors.</p> <p>Content:</p> <ul> <li>Output files from Computational Studies</li> <li>Raw data and Analysis from Fluorescence Titrations</li> <li>Crystal data</li> <li>ESI file in .pdf format containing experimental procedures and analytical data.</li> </ul>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.