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Goldenberg, J., Bisschop, K., Bruni, G., Di Nicola, M. R., Banfi, F., Faraone, F. P. "Replication Data for: Melanin-based color variation in response to changing climates in snakes"
<p>This repository contains the data used to produce the manuscrpit "Melanin-based color variation in response to changing climates in snakes" by Goldenberg, J., Bisschop, K., Bruni, G., Di Nicola, M. R., Banfi, F., Faraone, F. P.</p> <p>Article DOI: 10.1002/ece3.11627</p> <p>Journal: Ecology and Evolution</p>
Project Package BSc Thesis M de Beijer - University of Amsterdam
<p>This package contains the data that is made for the Bachelor's project of Marit de Beijer (University of Amsterdam). The research explores geodiversity variations in coral reef ecosystems in Southeast Asia and Australia.</p>
The input data of the multi-patch geometries used in: M. Kapl, A. Kosmač, V. Vitrih, Isogeometric collocation for solving the biharmonic equation over planar multi-patch domains, Computer Methods in Applied Mechanics and Engineering 424 (2024) 116882; DOI: 10.1016/j.cma.2024.116882
Open the record for dataset details and reuse information.
FIGURE 2. Dicordylus serranus Vanin, 1976 in A New Species Of Dicordylus Lacordaire, 1863 From Brazil (Coleoptera, Belidae, Pachyurinae, Agnesiotidini), With A New Record Of D. Serranus Vanin 1976 For Brazil J R M. M Abstract
FIGURE 2. Dicordylus serranus Vanin, 1976, female from Brazil (Minas Gerais, Passa Quatro); total length = 11 mm.
FIGURA 2 in Frugivoria E Dispersão De Sementes Pelo Lagarto Teiú Tupinambis Merianae (Reptilia: Teiidae) E R C M G Abstract
FIGURA 2. Velocidade de germinação das sementes de A. Cereus peruvianus; B. Genipa americana; C. Solanum viarum; e D. Eugenia uniflora. (!) tratamento, (") controle.
FIGURA 3. A in Biologia Reprodutiva De Suiriri Affinis E S. Islerorum (Aves: Tyrannidae) No Cerrado Do Brasil Central L E L M Â M Abstract
FIGURA 3. A – Ninho de Suiriri islerorum escondido em meio aos ramos de um arbusto seco; B – Fêmea incubando; C – Ninho e ovos; D – Ninhegos apresentando penugens brancas ainda no início do seu desenvolvimento. Fotos: Charles Duca (A e C) e Miguel Marini (B e D).
FIGURE 11 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 11. Relationship between the ovariole size and intertegular distance of bees (Linear regression). Data on Meliponini and Apini were excluded. Numbers regards to number of the species listed in the Table 1.
FIGURE 8 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 8: Oocyte-nurse cell complex in the posterior region of the germarium of Melipona bicolor. Notice the presence of accessory nuclei (a) into the oocyte cytoplasm. The nurse cells present a linear arrangement and they are connected with the oocyte; tp: tunica propria; (o): oocyte; (on): oocyte nucleus; (N): nurse cell; (n): nurse cell nucleus. Bar = 10 µm.
FIGURE 5 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 5. Longitudinal section of mature oocyte of Pseudaugochlora graminea with accessory nuclei placed in the peripheral oocyte region. The follicular cells are flattened; E: follicular epithelium; a: accessory nucleus; en: follicular epithelial cell nucleus. Bar = 10 µm.
FIGURE 3 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 3. Longitudinal section of a follicle of Epicharis affinis, observed under phase contrast microscope, Methyl Green-Pyronin stained, showing one vitellogenic growing oocyte (o) that have the nucleus (on) and the accessory nuclei (a) placed in the peripheral region of the cytoplasm; E: follicular epithelium covering the oocyte chamber; e: follicular layer of the nutritive chamber; m: muscle; N: nurse cells; pm: peritoneal membrane; T: trachea; tp: tunica propria. Bar = 10 µm.
FIGURE 7 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 7. Longitudinal section of the ovariole of Epicharis affinis obeserved under phase contrast microscope, Bromophenol Blue stained, showing the follicular epithelium (E) of two successive follicles with different developmental stages. Covering the mature oocyte, the follicular projection (p) that penetrate the corion (c). Notice that the epithelium cover the vitellogenic growing oocyte (o) without projections and with cells presenting different staining tonalities (*); en: follicular epithelial cell nucleus; (tp) tunica propria; (pm) peritoneal membrane; en: follicular epithelial cell nucleus. Bar = 10 µm.
FIGURE 12 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 12. Relationship between the oocyte size and intertegular distance of bees (Linear regression). Numbers regards to number of the species listed in the Table 1
FIGURE 1 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 1. Longitudinal section of the germarium position of Melipona quadrifasciata. The anterior region have undifferentiated cells and the posterior region have many oocyte-nurse cell complexes; o: young oocyte; on: oocyte nucleus; uc: undifferentiated cells; pm: peritoneal membrane; T: trachea; tp: tunica propria. Bar = 10 µm.
FIGURE 9 in A Comparative Study Of The Ovaries In Some Brazilian Bees (Hymenoptera; Apoidea) G F M J E S Abstract
FIGURE 9: Longitudinal section of a mature follicle of Epicharis affinis, Methyl Green Pyronin, observed under phase contrast microscope. Notice the follicular cells (E) with extensive cellular projections (p) that penetrate the thick corion (c); en: follicular epithelial cell nucleus; F: fat body cells. Bar = 10 µm.
FIGURA 1 in Frugivoria E Dispersão De Sementes Pelo Lagarto Teiú Tupinambis Merianae (Reptilia: Teiidae) E R C M G Abstract
FIGURA 1. Porcentagem de germinação das sementes de Eugenia uniflora, Genipa americana, Cereus peruvianus e Solanum viarum coletadas de frutos frescos (controle) e das fezes do teiú (tratamento).
FIGURA 2. A in Biologia Reprodutiva De Suiriri Affinis E S. Islerorum (Aves: Tyrannidae) No Cerrado Do Brasil Central L E L M Â M Abstract
FIGURA 2. A – Ninho de Suiriri affinis disposto na axila de um ramo; B – Ninho e ovos; C – Ninhegos no ninho. Note o acentuado efeito críptico; D – Ninhegos fora do ninho. Fotos: Charles Duca.
FIGURA 1 in Biologia Reprodutiva De Suiriri Affinis E S. Islerorum (Aves: Tyrannidae) No Cerrado Do Brasil Central L E L M Â M Abstract
FIGURA 1. Pluviosidade média registrada nos anos de 2000 a 2003 (barras) e durante o ano de 2003 (linhas) no Distrito Federal. Dados da estação meteorológica 83377 do 10º distrito de meteorologia (INMET, 2004).
Monthly time series of spatially enhanced relative humidity for Europe at 1000 m resolution (2000 - 2023) derived from ERA5-Land data
<p>Overview:<br>ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br>The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically: <br>1. spatially aggregate CHELSA to the resolution of ERA5-Land <br>2. calculate difference of ERA5-Land - aggregated CHELSA <br>3. interpolate differences with a Gaussian filter to 30 arc seconds <br>4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 12/2023.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>The resulting relative humidity has been aggregated to monthly averages.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month):<br><code>ERA5_land_rh2m_avg_monthly_YYYY_MM.tif</code></p> <p>Projection + EPSG code:<br>EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br>north: 6874000<br>south: -485000<br>west: 869000<br>east: 8712000</p> <p>Spatial resolution:<br>1000 m</p> <p>Temporal resolution:<br>Monthly</p> <p>Pixel values:<br>Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br>GDAL 3.2.2 and GRASS GIS 8.0.0/8.3.2</p> <p>Original ERA5-Land dataset license:<br><a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br>Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br>Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br>mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="https://doi.org/10.5281/zenodo.6146383">https://doi.org/10.5281/zenodo.6146383</a></p>
FIGURES 83–86. 83, Chlosyne e. endeis, C. leanira austrima and C. m in Introduction to the analysis, synthesis, and comparisons of endemic butterflies in Mexico
FIGURES 83–86. 83, Chlosyne e. endeis, C. leanira austrima and C. m. marina; 84, Chlosyne cynisca, C. gaudialis wellingi and Anthanassa nebulosa alexon; 85, Chlosyne rosita sspp.; 86, Phyciodes mylitta mexicana and P. pallescens.
FIGURE 6 in Redescription of Manayunkia caspica Annenkova, 1929 and M. danubialis Băcescu, 1944 n. comb. (Fabriciidae, Sabellida, Polychaeta)
FIGURE 6. Manayunkia danubialis Băcescu, 1944 n. comb., SEM micrographs. A. Total view of a complete specimen, lateral view. B. Anterior end, dorso-lateral view. C. Anterior end, ventral view. D Posterior end, lateral view; arrow pointing to the shift of the position of the faecal groove. E. Total view of a female, dorso-lateral view. F. Posterior end with anal opening and faecal groove, ventral view. G. Chaetigers 7 and 8; note the orientation of the thoracal uncini. H. Posterior end; lateral view. I. Posterior end of pygidium; arrows pointing to fields of epidermal gland openings. Scale bars. A, E 200 µm, B–D, F, G 100 µm, H, I 20 µm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.