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<p>Official logo of Open Access Pakistan </p>
La Digital Libray open data della Biblioteca del Comune di Massafra - Progetto "Terra delle Gravine"
<p><em>Terra delle Gravine tra sharing economy e turismo esperienziale</em><a href="#_ftn1">[1]</a> è un progetto finanziato dalla Regione Puglia a un consorzio di dodici comuni della provincia di Taranto, finalizzato alla formazione di studenti di scuola secondaria superiore nella descrizione di risorse digitali relative al patrimonio culturale in formato open data e alla creazione di una piattaforma, sempre in formato Open Data, di contenuti relativi ai beni culturali dei comuni coinvolti.</p> <p>Le attività sono state progettate e realizzate tra il 2017 e il 2018 dal Dipartimento di Studi Umanistici – DISUM dell’Università degli Studi di Bari e dalla spin off DABIMUS S.r.l. in collaborazione con l’Open Data Manager Pierfrancesco Paolicelli.</p> <p>I percorsi formativi e i tracciati in Open Data da utilizzare per indicizzare i beni considerati sono stati progettati in relazione alle diverse classi di beni culturali oggetto di interesse, che hanno incluso beni monumentali, beni storico artistici e demo-etnoantropologici e beni librari.</p> <p>Il DISUM, nella persona del prof. Nicola Barbuti, ha curato sia la progettazione e realizzazione del tracciato in open data utilizzato per indicizzare e pubblicare on line una selezione di volumi a stampa delle biblioteche comunali di Massafra, Mottola e Grottaglie, sia la formazione degli studenti delle scuole secondarie superiori dei tre comuni alla descrizione catalografica di risorse digitali librarie.</p> <p>I dataset sono stati strutturati conformemente alle regole definite dalla Regione Puglia nel suo catalogo <a href="http://www.dataset.puglia.it/">http://www.dataset.puglia.it/</a>, conformi all’ontologia dei luoghi della cultura e degli eventi culturali <em>Cultural ON</em> realizzata dal MiBACT nell’ambito del progetto nazionale <a href="http://dati.beniculturali.it">http://dati.beniculturali.it</a>, la piattaforma in cui il Ministero si propone di pubblicare il patrimonio culturale informativo secondo la logica dei Linked Open Data.</p> <p>Gli studenti degli istituti scolastici superiori dei tre comuni, impegnati in percorsi di Alternanza Scuola Lavoro, hanno prima seguito la formazione, quindi hanno indicizzato una selezione di volumi delle biblioteche comunali di riferimento utilizzando il tracciato in formato open data realizzato per il progetto<a href="#_ftn2">[2]</a>.</p> <p>Per facilitare la descrizione collaborativa e per la condivisione dei file con i tracciati è stata utilizzata la suite di Google Drive, di semplice utilizzo.</p> <p>Il monitoraggio degli stati di avanzamento di progetto e l’interazione con i team di studenti è stato realizzato attivando anche specifici gruppi tramite l’app Telegram, veloce, sicura, semplice e open.</p> <p>Le attività si sono svolte secondo le seguenti fasi:</p> <ul> <li>affiancamento degli studenti e formazione sui processi di indicizzazione secondo il formato di dati open CKAN;</li> <li>formazione sugli standard di descrizione digitale e indicizzazione di risorse librarie e sulla co-creazione assistita di dataset in open data;</li> <li>insegnamento sul riuso dei dati aperti per creare mappe, percorsi, infografiche, statistiche.</li> </ul> <p>Le tre digital library sono pubblicate sul sito dell’AgID <a href="http://dati.gov.it">http://dati.gov.it</a><a href="#_ftn3">[3]</a></p> <p> </p> <p><a href="#_ftnref1">[1]</a> https://terradellegravineprogettazioneperlacultura.wordpress.com/il-progetto/</p> <p><a href="#_ftnref2">[2]</a> http://www.terradellegravine.eu:3389/dataset</p> <p><a href="#_ftnref3">[3]</a> Massafra: <a href="https://dati.gov.it/dataset?id=69a7c931-b910-4acd-9f8f-47d0bd4f9dfb">https://dati.gov.it/dataset?id=69a7c931-b910-4acd-9f8f-47d0bd4f9dfb</a></p> <p>Grottaglie: <a href="https://dati.gov.it/dataset?id=644e8203-18f0-40a5-a46a-bd78cb2bd999">https://dati.gov.it/dataset?id=644e8203-18f0-40a5-a46a-bd78cb2bd999</a></p> <p>Mottola: <a href="https://dati.gov.it/dataset?id=5a99673e-2123-462e-a868-85b03c46c7fd">https://dati.gov.it/dataset?id=5a99673e-2123-462e-a868-85b03c46c7fd</a></p>
La Digital Libray open data della Biblioteca del Comune di Grottaglie - Progetto "Terra delle Gravine"
<p><em>Terra delle Gravine tra sharing economy e turismo esperienziale</em><a href="#_ftn1">[1]</a> è un progetto finanziato dalla Regione Puglia a un consorzio di dodici comuni della provincia di Taranto, finalizzato alla formazione di studenti di scuola secondaria superiore nella descrizione di risorse digitali relative al patrimonio culturale in formato open data e alla creazione di una piattaforma, sempre in formato Open Data, di contenuti relativi ai beni culturali dei comuni coinvolti.</p> <p>Le attività sono state progettate e realizzate tra il 2017 e il 2018 dal Dipartimento di Studi Umanistici – DISUM dell’Università degli Studi di Bari e dalla spin off DABIMUS S.r.l. in collaborazione con l’Open Data Manager Pierfrancesco Paolicelli.</p> <p>I percorsi formativi e i tracciati in Open Data da utilizzare per indicizzare i beni considerati sono stati progettati in relazione alle diverse classi di beni culturali oggetto di interesse, che hanno incluso beni monumentali, beni storico artistici e demo-etnoantropologici e beni librari.</p> <p>Il DISUM, nella persona del prof. Nicola Barbuti, ha curato sia la progettazione e realizzazione del tracciato in open data utilizzato per indicizzare e pubblicare on line una selezione di volumi a stampa delle biblioteche comunali di Massafra, Mottola e Grottaglie, sia la formazione degli studenti delle scuole secondarie superiori dei tre comuni alla descrizione catalografica di risorse digitali librarie.</p> <p>I dataset sono stati strutturati conformemente alle regole definite dalla Regione Puglia nel suo catalogo <a href="http://www.dataset.puglia.it/">http://www.dataset.puglia.it/</a>, conformi all’ontologia dei luoghi della cultura e degli eventi culturali <em>Cultural ON</em> realizzata dal MiBACT nell’ambito del progetto nazionale <a href="http://dati.beniculturali.it">http://dati.beniculturali.it</a>, la piattaforma in cui il Ministero si propone di pubblicare il patrimonio culturale informativo secondo la logica dei Linked Open Data.</p> <p>Gli studenti degli istituti scolastici superiori dei tre comuni, impegnati in percorsi di Alternanza Scuola Lavoro, hanno prima seguito la formazione, quindi hanno indicizzato una selezione di volumi delle biblioteche comunali di riferimento utilizzando il tracciato in formato open data realizzato per il progetto<a href="#_ftn2">[2]</a>.</p> <p>Per facilitare la descrizione collaborativa e per la condivisione dei file con i tracciati è stata utilizzata la suite di Google Drive, di semplice utilizzo.</p> <p>Il monitoraggio degli stati di avanzamento di progetto e l’interazione con i team di studenti è stato realizzato attivando anche specifici gruppi tramite l’app Telegram, veloce, sicura, semplice e open.</p> <p>Le attività si sono svolte secondo le seguenti fasi:</p> <ul> <li>affiancamento degli studenti e formazione sui processi di indicizzazione secondo il formato di dati open CKAN;</li> <li>formazione sugli standard di descrizione digitale e indicizzazione di risorse librarie e sulla co-creazione assistita di dataset in open data;</li> <li>insegnamento sul riuso dei dati aperti per creare mappe, percorsi, infografiche, statistiche.</li> </ul> <p>Le tre digital library sono pubblicate sul sito dell’AgID <a href="http://dati.gov.it">http://dati.gov.it</a><a href="#_ftn3">[3]</a></p> <p> </p> <p><a href="#_ftnref1">[1]</a> https://terradellegravineprogettazioneperlacultura.wordpress.com/il-progetto/</p> <p><a href="#_ftnref2">[2]</a> http://www.terradellegravine.eu:3389/dataset</p> <p><a href="#_ftnref3">[3]</a> Massafra: <a href="https://dati.gov.it/dataset?id=69a7c931-b910-4acd-9f8f-47d0bd4f9dfb">https://dati.gov.it/dataset?id=69a7c931-b910-4acd-9f8f-47d0bd4f9dfb</a></p> <p>Grottaglie: <a href="https://dati.gov.it/dataset?id=644e8203-18f0-40a5-a46a-bd78cb2bd999">https://dati.gov.it/dataset?id=644e8203-18f0-40a5-a46a-bd78cb2bd999</a></p> <p>Mottola: <a href="https://dati.gov.it/dataset?id=5a99673e-2123-462e-a868-85b03c46c7fd">https://dati.gov.it/dataset?id=5a99673e-2123-462e-a868-85b03c46c7fd</a></p>
Dataset_Dryocosmus_Torymus_Article recommended by PCI Zoology: The open bar is closed: restructuration of a native parasitoid community following successful control of an invasive pest.
<p>This Dataset has been used for the analyses within the paper recommended by PCI Zoology and entitled:</p> <p>"The open bar is closed: restructuration of a native parasitoid community following successful control of an invasive pest."<br> </p> <p> </p>
Open Access of COVID-19 related publications in the first quarter of 2020: a preliminary study based in PubMed
<p>Underlying data of the article: "Open Access of COVID-19 related publications in the first quarter of 2020: a preliminary study based in PubMed". Version 1 and Version 2 (after Unpaywall update).</p> <p>Data was analysed using Unpaywall and OpenRefine.</p>
Data and Intermediate Queries for: Evaluating institutional open access performance: Methodology, challenges and assessment
<p>This package provides the publicly sharable data for two related articles, alongside the key processing steps used to generate it.</p>
Post-disturbance conifer tree-ring δ15N reflects openness of the nitrogen cycle across temperate coastal rainforests
<p>1. Post-disturbance losses in nitrogen (N) may diminish forest productivity, and soils with inherently 'open' N cycles (high nitrification rates) are considered the most vulnerable to leaching losses of NO<sub>3</sub><sup>-</sup>. Monitoring ongoing N depletion from soil profiles is challenging, but tree-ring δ<sup>15</sup>N of regenerating stands may offer an effective method for assessing site-specific, long-term soil N dynamics. Evidence to date is mixed, however, and includes increasing, unchanging, or decreasing tree-ring δ<sup>15</sup>N in young stands following stand-level disturbances, possibly because of contrasting soil fertility among study sites. In addition, a consensus on post-disturbance N trajectories is hampered by the sometimes inconsistent patterns in tree-ring δ<sup>15</sup>N found between tree species of differing mycorrhizal association.</p> <p><a name="_Hlk38376288">2. We compared tree-ring </a>δ<sup>15</sup>N of two conifer species (<i>Picea sitchensis</i> with ectomycorrhizal fungi and <i>Thuja plicata</i> with arbuscular mycorrhiza) from a replicated silviculture trial across temperate rainforests of Vancouver Island (Canada). A natural gradient in soil fertility across the six sites, driven largely by topography and parent materials, was confirmed by an <i>in situ</i> increase in N mineralization and nitrification rates with declining C:N ratios for both organic horizons and mineral soils. </p> <p>3. Five decades after logging, the overall trend in tree-ring δ<sup>15</sup>N was positive, but among individual plots there was a wide range in δ<sup>15</sup>N slopes, ranging from nearly 0 to 0.13. We found the gains in tree-ring δ<sup>15</sup>N over time were consistent between mycorrhizal types and escalated sharply (up to 6‰) with increasing N mineralization rates, although less so on flat terrain with seasonal water tables. The most recent sapwood was also enriched in <sup>15</sup>N as soil N mineralization rates increased, perhaps slightly more so for <i>T</i>. <i>plicata</i> than <i>P</i>. <i>sitchensis</i>. </p> <p>4. <i>Synthesis</i>. The correspondence of tree-ring δ<sup>15</sup>N with soil fertility may be especially strong in regenerating forests because of tree ontogeny effects, including the expansion of rooting depth and differences in N resorption efficiency with stand age. <a name="_Hlk37683599">Sharp</a> increases in tree-ring d<sup>15</sup>N underscore the vulnerability of low C:N soils with open N cycles to post-disturbance N losses, and highlight how repeated, frequent harvest cycles may risk substantial N depletion from these productive rainforest ecosystems.</p>
Software Open Access Maximal-Sum Submatrix search using a hybrid Contraint Programming/Linear Programming approach: experiment code and results
<p>Experiments (made with Snakemake) code & results for the paper " Software Open Access Maximal-Sum Submatrix search using a hybrid Contraint Programming/Linear Programming approach" under review at EJOR.</p>
Data from: Negative correlation between dispersal investment and canopy openness among populations of the ant-dispersed sedge, Carex lanceolata
<p><span><span><span><span><span><span><span><span><span><span>Flowering plants</span></span></span></span></span></span></span></span></span></span><span><span><span><span><span><span><span><span><span><span><span> exhibit a wide variation in the resources they invest in dispersal structures (dispersal effort), but the environmental correlates remain unclear in many plants. Canopy openness is predicted to be negatively correlated with dispersal effort, because selective pressures on increased dispersal effort, including host-specific natural enemies and the paucity and/or ephemerality of safe sites, will be more prevalent in shady sites. Here, we tested this prediction using an ant-dispersed sedge, <i>Carex lanceolata</i> (Cyperaceae). By comparing seven populations of <i>C</i>.<i> lanceolata</i> in central Japan, we found a negative correlation between dispersal effort and canopy openness, thus supporting the prediction. A subsequent cafeteria experiment showed that a large species of ant (<i>Formica japonica</i>) with relatively long seed-dispersal distances tended to prefer diaspores with greater dispersal efforts, while smaller ant species with shorter dispersal distances preferred diaspores with lower dispersal efforts. These results correspond with the assumption that greater dispersal efforts result in a greater dispersal ability and indicate that among-site variations in dispersal efforts actually reflect differentiation in seed dispersal strategy rather than a neutral variation. There were more signs of rust infection caused by <i>Puccinia</i> spp., one of the main natural enemies of <i>C</i>.<i> lanceolata</i>, on adult plant leaves in more shady sites. A seedling transplant experiment was also performed and revealed that rust severity in sedge offspring was considerably reduced by the typical seed dispersal distance (ca. 4 m) afforded by the large ant species, <i>F</i>.<i> japonica</i>. The increased rust severity at shady sites, combined with the narrow dispersal ranges of rusts, can partially explain the negative correlation of dispersal effort with canopy openness. These results support the importance of canopy openness as a factor underlying the variations in dispersal effort seen among flowering plants.</span></span></span></span></span></span></span></span></span></span></span></p>
Figure 2 in The muscles, body wall and valve-opening mechanism of extant craniid (inarticulated) brachiopods
Figure 2. Digital and scanning electron micrographs (SEM) illustrating anatomical features. (A–H) Novocrania californica. (A). SEM of a piece of anterior adductor muscle, showing fibres make up whole length. (B) SEM close-up of fibres in A. (C) Lophophore cut to show brachial muscle and empty hydrostatic skeleton channel. (D) Ventral view of anterior adductor muscle,
Figure 5 in The muscles, body wall and valve-opening mechanism of extant craniid (inarticulated) brachiopods
Figure 5. Line drawings and digital and scanning electron micrographs illustrating organic ventral mounds and lophophore filaments. (A, B) Novocrania lecointei. (A) NIWA 37947. Transparent organic ventral valve with organic ventral mound on dark rock. (B) Cutaway drawing down midline. (C–F) Novocrania anomala. (C) OU 44526a. Ventral valve with organic ventral mound. (D) OU 44525a. Ventral valve with organic mound rotted away. (E) OU 39355. Dorsal valve with muscle scars flush with valve surface. (F) Reproduction of illustration of N. anomala with lophophore filaments extended (from Barrett 1856). All scale bars 2 mm. Abbreviations: aasc, anterior adductor muscle scar; bwi, "batwing" shaped outline of organic ventral valve; dv, dorsal valve; fi, filaments; obisc, oblique internal muscle scar; opab, organic posterior adductor base; ovm, organic ventral mound; ovv, organic ventral valve; pasc, posterior adductor muscle scar; vv, ventral valve.
[NGI Explorers | Open Call 2] Webinars
<p>Webinar series providing information about the Open Call 2</p>
Human open reading frame data
<p>Data used in the human de novo ORF paper (Dowling et al. 2020 Genome Biology and Evolution evaa194).</p> <p>The AA and DNA sequences were used to predict sequence properties such as aggregation propensity and intrinsic structural disorder.<br> In the publication figures 1, 3, 4, 5, and 7 are based on this data.<br> Figure 2 uses different ORFs and figure 6 uses these ORFs and their predicted chimpanzee homologs<br> Last updated: 24/09/2020</p> <p>Contains:<br> 1. hsapiens.orfs.aa.fa <br> - all human ORFs as amino-acid sequences<br> - contains 36524 sequences<br> Note: this has not been filtered for minimum expression of 0.5 TPM<br> <br> 2. hsapiens.orfs.dna.fa <br> - all human ORFs as DNA seqeunces<br> - contains 36524 sequences<br> Note: this has not been filtered for minimum expression of 0.5 TPM<br> <br> 3. orf_age_annotation.csv<br> - The 29751 ORFs used for the plots in the human de novo publication.<br> - Contains ORF_id, minimum age (million years) and annotation status.<br> - ORFs here where filtered for a minimum expression value of 0.5 TPM<br> Note: In the publication figures were made using ORFs belong to annotation classes 0 (intergenic), 3 (intron), and 5,6, and 7 (CDS/exon).<br> 0 = intergenic<br> 1 = close to gene (same strand)<br> 2 = close to gene (opposite strand)<br> 3 = intron (same strand)<br> 4 = intron (opposite strand)<br> 5 = CDS (out of frame, same strand)<br> 6 = CDS (out of frame, opposite strand)<br> 7 = CDS (in frame)<br> - information on minimum age given in million years (column 'age') <br> 0 = human-restricted<br> 6.65 = homolog in Pan<br> 9.06 = homolog in Gorilla<br> 15.76 = homolog in Pongo<br> 28.44 = homolog in Macaca<br> 90 = homolog in Mus<br> Note: in the publication these correspond to conservation classes 0-5 respectively.<br> </p> <p> </p>
Dataset: Open Access: An Analysis of Publisher Copyright and Licensing Policies in Europe, 2020
<p>This dataset supports the SPARC Europe study that investigates the copyright retention policy amongst publishers, self-archiving policies and records publisher policies on open licensing, also as relating to the Plan S requirements on rights and licensing. The report can be found here: 10.5281/zenodo.4046624)</p> <p><strong>Data reuse information</strong></p> <p>These data were compiled by Chris Morrison and Jane Secker as part of the above-mentioned research project. For more information on how the data were produced and verified see 3.3 of the report 10.5281/zenodo.4046624. There are two sets of data with supporting information that are made available under different reuse terms.</p> <p><strong>1. DOAJ dataset</strong></p> <p>The file "DOAJ data May2020" was extracted from the Directory of Open Access Journals on 10 May 2020 and represents an analysis of the data (which is (c) 2020 DOAJ) by Chris Morrison and Jane Secker. The dataset is licensed under CC BY-SA following the DOAJ data licence.</p> <p><strong>2. 10 large publishers dataset</strong></p> <p>The file "Academic Publishers Copyright Policies and Practices Table" was created by Chris Morrison and Jane Secker and is provided under CC0 dedication.</p> <p>The remaining files provide information from publisher websites and directly from publisher representatives and remain (c) of each respective organisation.</p>
Exploring human splenic red pulp vasculature in virtual reality. Details of sheathed capillaries and the open capillary network. Supplementary material
<p>Supplementary files demonstrate our data in an interactive application. Please download und unpack the file, then launch file "start.bat". Please note that loading the original images takes some time. If you have a Steam VR headset, it is detected and used automatically.</p> <ol> <li><strong>Supplementary file 1 </strong><br> Localization of arteries and arterioles in ROI 4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), smooth muscle alpha-actin (SMA) colored white and capillary sheaths depicted in green (CD271). Most arteries and arterioles can be localized by white color. White appears in a vertex of the blue reconstruction of CD34 staining, if a surface reconstructed for SMA labelling is closer than 8.75 µm to this vertex. Capillary sheaths connected to the selected arterioles (marked red in Suppl. file 2) are green and non-connected sheaths fed by other arterioles are dark green (CD271).</li> <li><strong>Supplementary file 2</strong><br> Relation of capillary sheaths to terminal arterioles in ROI4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). Follicular dendritic cells (FDCs) in follicles are light green (CD271). This file corresponds to Fig. 3 and to Suppl. Video 1-3.</li> <li><strong>Supplementary file 3</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 2.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271). This file corresponds to Fig. 4a,b.</li> <li><strong>Supplementary file 4</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 1.<br> ROI 1 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271)</li> <li><strong>Supplementary file 5</strong><br> White pulp in 3D (ROI 3).<br> ROI 3 with all endothelia and some periarterial fibroblasts colored blue (CD34) and capillary sheaths in green (CD271). FDCs in follicles are light green (CD271). Arteries and terminal arterioles were not labelled.</li> <li><strong>Supplementary file 6 </strong><br> Sheathed capillaries exhibit short open-ended side branches.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). The open-ended side branches of the selected sheathed capillaries were manually labelled red and are visualized in their entire length. This file corresponds to Fig. 4c.</li> <li><strong>Supplementary file 7</strong><br> Terminal arterioles may have a few unsheathed connections to the red pulp capillary network.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). Connections from a terminal arteriole to the red pulp capillary network lacking sheaths were manually labelled red. A part of the capillary network after the connection is colored yellow. This file corresponds to Figs. 4d,e.</li> <li><strong>Supplementary file 8</strong><br> B-lymphocytes accumulate around terminal arteries and in/around capillary sheaths.<br> Lower part of ROI 2 with selected terminal artery and terminal arterioles colored blue and connected capillary sheaths in green (CD271). B-lymphocytes were digitally reduced in number and automatically labelled red (CD20). The B-cells accumulate around a terminal artery and around (and inside) capillary sheaths. This file corresponds to Fig. 6 and to Suppl. Video 4.</li> <li><strong>Supplementary file 9</strong><br> Reduction of B-lymphocytes is inevitable for visualization.<br> ROI 2 showing Suppl. file 8 integrated into the entire ROI 2. A large number of B-lymphocytes is present in the red pulp of ROI 2 (CD20 visualized in white). These cells are self-occluding and necessitate reducing B-lymphocytes as shown in Suppl. Fig. 8 to highlight accumulations.</li> <li><strong>Supplementary file 10</strong><br> Red pulp venule with potential connections to capillary network.<br> A red pulp venule with capillaries in ROI 1. Capillary and venous endothelium is shown in light blue (CD34). A part of a red pulp venule with potential contributing capillaries (CD34, blue) was manually selected in addition to a terminal arteriole (light red). The capillary sheaths connected with this arteriole are green (CD271). Non-connected sheaths are dark green (CD 271) and FDCs in follicles are light green (CD271). Capillaries from the red pulp network, which appear to be connected to the venule were manually colored red. Two of the red capillaries seem to originate from a sheathed capillary. This file corresponds to Fig. 5a-d and to Suppl. Video 5.</li> </ol> <p>Bounding boxes for all files have a side length of 1 mm with exception of Suppl. File 8 which is 800 (b) x 620 (h) x 614 (d) µm.</p> <p>As for videos, each video is in three quality settings:</p> <ul> <li>..._h264_8bit.mov is the most generic H.264 HQ setting. Should play everywhere, also with QuickTime.</li> <li>..._h265_10bit.mov is the 10 bit video version, encoded with HEVC encoder. Should be the same or higher quality with less size. Might not play everywhere.</li> <li>..._h264_8bit_small.mov is the H.264 LQ setting with much lower resolution, use this if your download bandwidth is limited.</li> </ul> <p>Now, there are 5 videos to supplement the submission:</p> <ol> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%201%20-%20sheath%20video%20r4%20full%20h264%208bit.mov">suppl video 1 - sheath r4 full .</a>.. shows the region ROI4 with full vasculature, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%202%20-%20sheath%20video%20r4%20select%20h264%208bit.mov">suppl video 2 - sheath r4 select .</a>... shows only the selection of the vasculature from ROI4, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%203%20-%20sheath%20video%20r4%20clipping%20h264%208bit.mov">suppl video 3 - sheath r4 clipping .</a>... showcases the front plane clipping technique we used for diagnostics in VR. This demonstrates the contents of Fig. 8 in dynamics.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%204%20-%20sheath%20video%20r2%20bcell%20h264%208bit.mov">suppl video 4 - sheath bcell .</a>.. shows the selection of the B-cells to supplement Fig. 6 in the manuscript.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%205%20-%20sheath%20video%20r1%20vene%20h264%208bit.mov">suppl video 5 - sheath r1 vene .</a>.. shows a red pulp venule and its apparent connections, this supplements Fig. 5 of the manuscript.</li> </ol>
Sentiment Polarity of Programmers in an Open Source Software Project: An Exploratory Study
<p>Context: During the implementation of issues filed in open source software projects, programmers engage and interact in discussions on how to implement them. These discussions provide evidence to investigate emotionally loaded practices embraced by programmers. They interact to explain their point of view regarding the project and the issue under analysis. Objective: Analyze programmers sentiment polarity in an open source software project having releases as a reference for the analysis. Methods: We conducted an exploratory study to characterize the sentiment polarity of comments registered in issues associated with releases of the Moby open source software project. Results: The quantitative analysis identified sentiment polarity variations throughout consecutive releases in line with specific functionalities. Based on a qualitative analysis, we identified these functionalities and specific group of programmers that contributed to those results. Conclusions: We identified initial evidence to contribute for the understanding of the causes underlying the influence of the sentiments of the developers in the context of releases of open source software projects.</p>
Guia Embaixadoras para o Open Data Day 2020
<p>O <strong>Open Data Day</strong> é um momento anual onde todo o mundo debate e promove, por um dia, o uso de dados abertos. Em geral, acontecem eventos, workshops, fóruns online, hackatons e todo o tipo de atividade usando informação livre. O intuito da data é incentivar governos, empresas e a sociedade civil a usarem dados abertos em suas iniciativas.</p> <p>Para saber mais acesse: <a href="https://github.com/okfn-brasil/embaixadoras/blob/master/Guia-ODD/Guia-ODD2020.md">https://github.com/okfn-brasil/embaixadoras/blob/master/Guia-ODD/Guia-ODD2020.md</a></p> <p>Publicado pelo Calebe em 21/10/2020</p>
Dataset: Scoping the Open Science Infrastructure Landscape in Europe
<p>"We see a diverse, interconnected, open, professional and viable, developing OS ecosystem in Europe on solid ground; one that is worth investing in. At the same time, this developing ecosystem faces a range of issues that challenge its path to a more open and sustainable future." This is a core conclusion of a new SPARC Europe report; the work is a result of a recent in-depth survey of infrastructure and/or services that are part of the European Open Science infrastructure (OSI) landscape. This dataset supports that work. </p> <p>The dataset is licensed CC0.</p>
Open Services for Lifecycle Collaboration: Um Estudo de Mapeamento Sistemático
<p>A indústria de software investe em ferramentas modernas ao longo de todo o ciclo de desenvolvimento de software. No entanto, existem desafios para alcançar um ambiente integrado de ponta a ponta, como por exemplo estabelecer a rastreabilidade dos artefatos. Para mitigar esses desafios, muitas abordagens foram propostas para integração de ferramentas de software. Nesse contexto, o Open Services for Lifecycle Collaboration (OSLC) é um padrão aberto para interoperabilidade de ferramentas, que permite a federação de dados ao longo do ciclo de vida de aplicações de Engenharia de Software (ES). Este artigo apresenta um estudo de mapeamento sistemático sobre OSLC, analisando 59 estudos primários e abordando questões de integração.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.