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FIGURES 20–23 in Host associations of Melanterius Erichson (Coleoptera: Curculionidae: Cleogonini), with a diagnosis and delimitation of the genus and description of five new species
FIGURES 20–23. Dorsal view of habitus and aedeagi of Melanterius castaneus Lea and M. maculatus Lea. 20–21: M. castaneus; 20: male (Western Australia, Esperance); 21: aedeagus (Western Australia, Rossiter Bay). 22–23: M. maculatus; 22: male (New South Wales, Bateman's Bay); 23: adeagus (New South Wales, Queanbeyan).
Selective lipid recruitment by an archaeal DPANN symbiont from its host
<p><strong>Abstract</strong></p><p>The symbiont <i>Ca.</i> Nanohaloarchaeum antarcticus is obligately dependent on its host <i>Halorubrum lacusprofundi</i> for lipids and other metabolites due to its lack of certain biosynthetic genes. However, it remains unclear which specific lipids or metabolites are acquired from its host, and how the host responds to infection. Here, we explored the lipidome dynamics of the <i>Ca.</i> Nha. antarcticus – <i>Hrr. lacusprofundi</i> symbiotic relationship during co-cultivation. By using a comprehensive untargeted lipidomic methodology, our study reveals that <i>Ca.</i> Nha. antarcticus selectively recruits 110 lipid species from its host, i.e. nearly two-thirds of the total number of host lipids. Lipid profiles of co-cultures displayed shifts in abundances of bacterioruberins and menaquinones and changes in the degree of bilayer-forming glycerolipid unsaturation. This likely results in increased membrane fluidity and improved resistance to membrane disruptions, consistent with compensation for higher metabolic load and mechanical stress on host<i> </i>membranes when in contact with <i>Ca. </i>Nha. antarcticus cells. Notably, our findings differ from previous observations of other DPANN symbiont-host systems, where no differences in lipidome composition were reported. Altogether, our work emphasizes the strength of employing untargeted lipidomics approaches to provide details into the dynamics underlying a DPANN symbiont-host system.</p><p><strong>Repository Contents</strong></p><p><strong>1_DPANN_lipidome.zip</strong>: includes all source data and code scripts used for figures in this study. Files are organized as follows and are associated with the corresponding parts of the manuscript: Figure 1b, Figure 1c, Figure 1d, Figure 1e, Figure 1f, Figure 1g, Figure 3a, Figure 3b, Supplementary Figures 7-8.</p><p>Figure 1. Overview of the experimental design and the general lipidome composition in the <i>Hrr. lacusprofundi</i>-<i>Ca.</i> Nha. antarcticus system. (b) qPCR based growth measurements of pure <i>Hrr. lacusprofundi </i>cultures and co-cultures of <i>Hrr. lacusprofundi </i>with <i>Ca. </i>Nha. antarcticus. Error bars show the standard deviation of calculated 16S rRNA copy number. (c) Optical density at 600 nm (OD600) growth measurements of pure <i>Hrr. lacusprofundi </i>cultures and co-cultures of <i>Hrr. lacusprofundi </i>with <i>Ca. </i>Nha. antarcticus. Error bars show the standard deviation of measured OD600 values. (d) The number of individual lipid species in major lipid classes among all the samples. (e) Principal Component Analysis (PCA) based on the abundance of intact polar lipid species, showcasing the variance in general lipidomic features among distinct cultures or over varying culture durations. (f) Information theory analysis showing lipidome diversity and specialization based on the Shannon entropy of the lipidomic frequency distribution. Error bars in the data represent variability across replicates. (g) Hierarchical clustering heatmap depicting the distribution of major lipid classes among distinct cultures or over varying culture durations. The colour bar on the right side represents Z-score normalization scale (ranges from -3 to +3 standard deviation). Sample abbreviations: <i>Ca</i>. Nha. antarcticus (Nha), <i>Hrr. lacusprofundi </i>(HP), co-cultures (Cc). Lipid abbreviations: archaeol core lipids (AR), phosphatidylglycerol (PG), phosphatidylglycerosulfate (PGS), phosphatidic acid (PA), phosphatidylglycerophosphate methyl ester (PGP-Me), biphosphatidylglycerol (PGPG), cardiolipin (CL), sulphated diglycosyl (SDG), monoglycosyl (1G), diglycosyl (2G), archeaol lipids containing a sulfur-containing head group except for PGS (S), menaquinone (MK), an "extended " archaeological chain", i.e. with a C25 isoprenoid carbon chain (EXT-AR), unsaturation in the archaeol chain (uns). The two "n" in MK (n:n) stand for numbers of the isoprenoid unit in the side chain and unsaturation in the isoprenoid chain, respectively. MK(n:n-1) signifies one less double bond in the nth isoprenoid chain.</p><p>Figure 3. The presence, absence, and changes in lipid composition in the <i>Hrr. lacusprofundi</i>-<i>Ca.</i> Nha. antarcticus system (a) The relative abundance of representative lipid species within the most dominant lipid classes. Statistical differences in lipid species among the samples were assessed using the Tukey's Honest Significance Difference test (TukeyHSD), and results were visualized with the Compact Letter Display (CLD) (P < 0.05). (b) The intersection of lipid species across samples is illustrated through an UpSet plot. A threshold of 0.01% relative abundance of total lipids was applied to determine the presence of a lipid in a specific sample; lipids with less than 0.01% of total lipid abundance were considered absent in that sample. The dark connected dots denote lipid species shared among these samples. Abbreviations: demethylmenaquinone (DMK), methylmenaquinone (MMK), dimethylmenaquinone (DMMK). The representative lipid species are 1G-AR (<i>m/z</i> 832.760, C49H102O8N+), 2G-AR (<i>m/z</i> 994.813, C55H112O13N+), AR (<i>m/z</i> 653.681, C43H89O3+), Bacterioruberin (<i>m/z</i> 741.581, C50H77O4+), CL-AR-AR (<i>m/z</i> 1522.313, C89H183O13P2+), MK(8:8) (<i>m/z</i> 717.560, C51H73O2+), PG-AR (<i>m/z</i> 807.684, C46H96O8P+), PGP-Me-AR (<i>m/z</i> 901.666, C47H99O11P2+), PG-PG-AR (<i>m/z</i> 961.687, C49H103O13P2+).</p><p>Supplementary Fig. 7 The distribution of different unsaturation degrees of the summed bilayer-forming glycerolipids and menaquinones among the samples. Statistical differences in lipid species among the samples were assessed using the Tukey's Honest Significance Difference test (TukeyHSD), and results were visualized with the Compact Letter Display (CLD) (P < 0.05).</p><p>Supplementary Fig. 8 The intersection of lipid species across samples including the enrichment is illustrated through an UpSet plot. A threshold of 0.01% relative abundance of total lipids was applied to determine the presence of a lipid in a specific sample; lipids with less than 0.01% of total lipid abundance were considered absent in that sample. The dark connected dots denote lipid species shared among these samples.</p><p><strong>2_Lipidome source data.xlsx</strong>: includes an original table regarding lipidome identification, abundance, precursor mass, retention time, classification as well as ID (name) in the molecular network.</p><p> </p><p><strong>3_Microscopy_Genomics_Scripts.zip</strong>: Includes all scripts used for analyses of microscopy data and assembly and annotation of genomes. Scripts are:</p><p>Image_Analysis.ijm - ImageJ macro for automated analyses of 16S rRNA FISH images. Analyses were run with a default install of Fiji.</p><p>Microscopy_Analyses.R - R script for production of Supplementary Fig. 5. Colours and letter coding were added to plots manually after export from the R environment.</p><p>Assembly_Annotation.rmd - Markdown file with workflow used for genome assembly and annotation described in Figure 4, and Supplementary Tables 2 - 5. Assembly and annotations were processed on an in house HPC consisting of 4x Xeon Gold 6140 2.3 GHz processors using bash, python and perl. The system runs a Linux operating system, Red Hat Enterprise 7.5.</p>
Simulation results for "Deciphering clues regarding magma composition encoded in quartz-hosted embayments and melt inclusions through direct numerical simulations"
Open the record for dataset details and reuse information.
Data for "Deciphering the code of viral-host adaptation through maximum entropy models"
<p>Data needed to reproduce the figures of the paper "Deciphering the code of viral-host adaptation through maximum entropy models", following the instructions provided in <a href="https://github.com/adigioacchino/MENB_snakemake">this GitHub repository</a>.</p>
Identifying candidate host plants for trap cropping against Drosophila suzukii in vineyards
<p>Raw data for the identification of candidate trap crop species against <i>Drosophila suzukii </i>in vineyards. Overall, oviposition attractiveness and suitability for larval development was assessed for the fruits of 60 different plant species in no-choice and multiple-choice preference test conducted in 2018 in relation to fruit traits such as skin hardness, skin elasticity, acidity and sugar content. </p>
Figs. 5–10 in Two Striking New Species Of Chrysobothris Eschscholtz (Coleoptera: Buprestidae) From Southern Mexico, With Mexican State And Host Records For Five Other Species In The Genus
Figs. 5–10. Aedeagi of Chrysobothris species. 5–7) C. chuckbellamyi, holotype: 5) Dorsal view; 6) Ventral view; 7) Lateral view; 8–10) C. romeroi, allotype: 8) Dorsal view; 9) Ventral view; 10) Lateral view.
Phylogenetically under‐dispersed gut microbiomes are not correlated with host genomic heterozygosity in a genetically diverse reptile community
<p>We are providing semi-processed datasets relevant to the paper "Phylogenetically under-dispersed gut microbiomes across a range of host genetic diversity in a reptile community point to structuring by conserved host genes." Specifically, we include VCF files of RADseq data from host individuals, which are processed versions of the raw reads available at NCBI's Short Read Archive under PRJA744273. These data were processed for heterozygosity calculation using an adapted of the pipeline presented in Singhal et al. 2017, "Genetic diversity is largely unpredictable but scales with museum occurrences in a species-rich clade of Australian lizards."</p> <p>In addition, we include a database of 16S sequences from gut microbiome amplicon sequencing from the same host animals. The raw reads are available at NCBI's Short Read Archive under PRJNA746253. The sequences accessioned here are a curated, cleaned set of reference reads to which we realigned reads from each individual host.</p>
FIGURES 73–76 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 73–76. Scanning electron micrographs of anterior end of parthenogenetic females of Fergusobia. 73: from E. planchoniana 'leafy' LBG. 76: from E. delegatensis TLG. 77: from E. tereticornis TLG. 78: from E. gomphocephala PG. Scale bars 2 µm.
FIGURES 80–88 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 80–88. Gall forms induced by the Fergusobia/Fergusonina mutualism. 80: PG on leaf and petiole on S. luehmannii. 81: SBG on M. quinquenervia. 82: axial bud 'stem' galls on C. tessellaris. 83: FBG on E. eugenioides. 84: TLG on E. camaldulensis. 85: Bud galls on E. leucoxylon. 86: Unilocular axial bud gall on M. decora. 87: PG on leaf of E. pauciflora. 88: PG on leaf of E. gomphocephala. Scale bars 80–83 = 5mm; 84 = 1cm; 85–88 = 5mm
FIGURES 69–72 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 69–72. Scanning electron micrographs of lateral fields of parthenogenetic females of Fergusobia. 69: from E. gomphocephala PG. 70: from E. tereticornis TLG. 71: from E. viminalis 'leafy' LBG. 72: from E. gomphocephala PG. Scale bars 69–71 = 5 µm; 72 = 2 µm.
FIGURES 1–22 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 1–22. Habitus drawings of parthenogenetic females from Fergusobia clades inferred from sequences of D2/ D3. 1: F. magna from C. tessellaris axial bud 'stem' galls. 2: from M. linariifolia SBG. 3: from E. camaldulensis TLG. 4: from E. camaldulensis FBG. 5: from E. microcarpa FBG. 6: from E. delegatensis TLG. 7: from E. fasciculosa style gall. 8: from E. gomphocephala PG. 9: from E. planchoniana 'leafy' LBG. 10: from E. tereticornis PG. 11: from S. luehmannii PG. 12: F. ptychocarpae from C. ptychocarpa FBG. 13: from A. floribunda TLG. 14: F. fisheri from E. leucoxylon FLG. 15: from Corymbia sp. PG. 16: from E. camaldulensis axial bud 'stem' galls. 17: F. quinquenerviae from M. quinquenervia SBG. 18: from M. nervosa BSG. 19: from M. quinquenervia 'rosette' gall. 20: from E. obliqua FBG a. 21: from E. obliqua FBG b. 22: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
FIGURES 62–68 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 62–68. Shield forms found on third stage larvae of Fergusonina fly species associated with Fergusobia nematodes. "Bars" form. 62: from E. delegatensis TLG. 63: from Eucalyptus sp. FLG. "Dots" form. 64: from E. porosa PG. 65: from E. viminalis ULBG. 66: from E. odorata FLG. 67: from E. siderophloia FLG. "Plates with teeth" form. 68: from E. cosmophylla TLG. Scale bars 62–67 = 0.02mm; 68= 0.2mm.
FIGURES 44–61 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 44–61. Habitus drawings of preparasitic infective females from Fergusobia clades inferred from sequences of D2/D3. 44: F. magna from C. tessellaris axial bud 'stem' galls. 45: from M. linariifolia 46 from E. camaldulensis TLG. 47: from E. camaldulensis FBG. 48: from E. microcarpa FBG. 49: from E. delegatensis TLG. 50: from E. fasciculosa style gall. 51: from E. gomphocephala PG. 52: from E planchoniana 'leafy' LBG. 53: from S. luehmannii PG. 54: F. ptychocarpae from C. ptychocarpa FBG. 55: from A. floribunda TLG. 56: F. fisheri from E. leucoxylon FLG. 57: from Corymbia sp. PG. 58: from E. camaldulensis axial bud 'stem' galls. 59: F. quinquenerviae from M. quinquenervia SBG. 60: from M. quinquenervia 'rosette' gall. 61: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
FIGURES 23–43 in The nematode genus Fergusobia (Nematoda: Neotylenchidae): molecular phylogeny, descriptions of clades and associated galls, host plants and Fergusonina fly larvae 2633
FIGURES 23–43. Habitus drawings of males from Fergusobia clades inferred from sequences of D2/D3. 23: F. magna from C. tessellaris axial bud 'stem' galls. 24: from M. linariifolia ULBG. 25: from E. camaldulensis TLG. 26: from E. camaldulensis FBG. 27: from E. microcarpa FBG. 28: from E. delegatensis TLG. 29: from E. fasciculosa style gall. 30: from E. gomphocephala PG. 31: from E. planchoniana 'leafy' LBG. 32: from E. tereticornis PG. 33: from S. luehmannii PG. 34: F. ptychocarpae from C. ptychocarpa FBG. 35: from A. floribunda TLG. 36: F. fisheri from E. leucoxylon FLG. 37: from Corymbia sp. PG. 38: from E. camaldulensis axial bud 'stem' galls. 39: F. quinquenerviae from M. quinquenervia SBG. 40: from M. quinquenervia 'rosette' gall. 41: from E. obliqua FBGa. 42: from E. obliqua FBGb. 43: from E. viminalis 'leafy' LBG. Scale bars = 50µm.
Species TX OK Distribution Map FH Hosts Pityophthorina Araptus dentifrons Wood 1 1* MEX+NT 103 ph-my Milkweed vines Conophthorus echinatae Wood 1* SEUS 104 my-sp Pinus Conophthorus edulis Hopkins 1 SWNA 104 my-sp Pinus Dendroterus texanus Wood 1 MEX+NT 105 ph Jatropha dioica Pityoborus comatus (Zimmermann) 1 1 SENA 105 xm Pinus Pityophthorus annectens LeConte 1 1 SE+SW 106 ph Pinus Pityophthorus arcanus Bright 1 SWNA 106 ph Pinus Pityophthorus barberi Blackman 1 SWNA 107 ph Pinus Pityophthorus brevis Blackman 1 SWNA 108 ph Pinus Pityophthorus confertus Swaine 1 SWNA 110 ph Pinus Pityophthorus confinis LeConte 1* SWNA 109 ph Pinus Pityophthorus confusus Blandford 1 SE+SW 110 ph Pinus Pityophthorus consimilis LeConte 1 1* SENA 111 ph Pinus Pityophthorus crassus Blackman 1 SWNA 112 ph Pinus Pityophthorus crinalis Blackman 1 1* SENA 109 ph Rhus Pityophthorus deletus LeConte 1 SWNA 111 ph Pinus Pityophthorus grandis Blackman 1 SWNA 113 ph Pinus Pityophthorus guatemalensis Blandford 1 SWNA 112 ph Quercus Pityophthorus lautus Eichhoff 1 1* SENA 112 ph Rhus, Toxicodendron Pityophthorus liquidambarus Blackman 1 SENA 113 ph Liquidambar Pityophthorus pulchellus Eichhoff 1 SE+SW 115 ph Pinus Pityophthorus pulicarius (Zimmermann) 1 1* SENA 114 ph-my Pinus Pityophthorus pullus (Zimmermann) 1 SENA 115 ph Pinus Pityophthorus schwarzi Blackman 1 SWNA 116 ph Pinus Pityophthorus schwerdtfegeri Schedl 1 SWNA 117 ph-my Pinus Pityophthorus scriptor Blackman 1 1 SENA 118 ph Rhus in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Pityophthorina Araptus dentifrons Wood 1 1* MEX+NT 103 ph-my Milkweed vines Conophthorus echinatae Wood 1* SEUS 104 my-sp Pinus Conophthorus edulis Hopkins 1 SWNA 104 my-sp Pinus Dendroterus texanus Wood 1 MEX+NT 105 ph Jatropha dioica Pityoborus comatus (Zimmermann) 1 1 SENA 105 xm Pinus Pityophthorus annectens LeConte 1 1 SE+SW 106 ph Pinus Pityophthorus arcanus Bright 1 SWNA 106 ph Pinus Pityophthorus barberi Blackman 1 SWNA 107 ph Pinus Pityophthorus brevis Blackman 1 SWNA 108 ph Pinus Pityophthorus confertus Swaine 1 SWNA 110 ph Pinus Pityophthorus confinis LeConte 1* SWNA 109 ph Pinus Pityophthorus confusus Blandford 1 SE+SW 110 ph Pinus Pityophthorus consimilis LeConte 1 1* SENA 111 ph Pinus Pityophthorus crassus Blackman 1 SWNA 112 ph Pinus Pityophthorus crinalis Blackman 1 1* SENA 109 ph Rhus Pityophthorus deletus LeConte 1 SWNA 111 ph Pinus Pityophthorus grandis Blackman 1 SWNA 113 ph Pinus Pityophthorus guatemalensis Blandford 1 SWNA 112 ph Quercus Pityophthorus lautus Eichhoff 1 1* SENA 112 ph Rhus, Toxicodendron Pityophthorus liquidambarus Blackman 1 SENA 113 ph Liquidambar Pityophthorus pulchellus Eichhoff 1 SE+SW 115 ph Pinus Pityophthorus pulicarius (Zimmermann) 1 1* SENA 114 ph-my Pinus Pityophthorus pullus (Zimmermann) 1 SENA 115 ph Pinus Pityophthorus schwarzi Blackman 1 SWNA 116 ph Pinus Pityophthorus schwerdtfegeri Schedl 1 SWNA 117 ph-my Pinus Pityophthorus scriptor Blackman 1 1 SENA 118 ph Rhus
Species TX OK Distribution Map FH Hosts Pityophthorus tuberculatus Eichhoff 1 SWNA 119 ph Pinus Pityophthorus venustus Blackman 1 SWNA 120 ph Pinus Pityophthorus virilis Blackman 1 SWNA 121 ph Rhus Pityotrichus barbatus (Blackman) 1 SWNA 115 ph Pinus Pseudopityophthorus asperulus (LeConte) 1 1* SENA 122 ph Quercus Pseudopityophthorus denticulus Wood 1 SWNA 123 ph Quercus Pseudopityophthorus minutissimus (Zimmermann) 1* 1* SENA 124 ph Quercus Pseudopityophthorus pruinosus (Eichhoff) 1 1* SE+MEX 125 ph Quercus Pseudopityophthorus pubescens Blackman 1* 1 SENA 126 ph Quercus Pseudopityophthorus yavapaii Blackman 1* SWNA 127 ph Quercus Corthylina Corthylus punctatissimus (Zimmermann) 1* SENA 130 xm polyphagous Gnathotrichus denticulatus Blackman 1 SWNA 128 xm Pinus Gnathotrichus materiarius (Fitch) 1 1 SENA 129 xm polyphagous Gnathotrichus pilosus (LeConte) 1* SWNA 129 xm Monarthrum dentigerum (LeConte) 1 SWNA 130 xm Quercus Monarthrum fasciatum (Say) 1 1* SENA 131 xm polyphagous Monarthrum mali (Fitch) 1 1* SENA 132 xm polyphagous in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Pityophthorus tuberculatus Eichhoff 1 SWNA 119 ph Pinus Pityophthorus venustus Blackman 1 SWNA 120 ph Pinus Pityophthorus virilis Blackman 1 SWNA 121 ph Rhus Pityotrichus barbatus (Blackman) 1 SWNA 115 ph Pinus Pseudopityophthorus asperulus (LeConte) 1 1* SENA 122 ph Quercus Pseudopityophthorus denticulus Wood 1 SWNA 123 ph Quercus Pseudopityophthorus minutissimus (Zimmermann) 1* 1* SENA 124 ph Quercus Pseudopityophthorus pruinosus (Eichhoff) 1 1* SE+MEX 125 ph Quercus Pseudopityophthorus pubescens Blackman 1* 1 SENA 126 ph Quercus Pseudopityophthorus yavapaii Blackman 1* SWNA 127 ph Quercus Corthylina Corthylus punctatissimus (Zimmermann) 1* SENA 130 xm polyphagous Gnathotrichus denticulatus Blackman 1 SWNA 128 xm Pinus Gnathotrichus materiarius (Fitch) 1 1 SENA 129 xm polyphagous Gnathotrichus pilosus (LeConte) 1* SWNA 129 xm Monarthrum dentigerum (LeConte) 1 SWNA 130 xm Quercus Monarthrum fasciatum (Say) 1 1* SENA 131 xm polyphagous Monarthrum mali (Fitch) 1 1* SENA 132 xm polyphagous
Species TX OK Distribution Map FH Hosts Scolytini Scolytina Scolytus fagi Walsh 1? SENA 33 ph Celtis, Quercus Scolytus multistriatus (Marsham) 1 1 EX 34 ph Ulmus Scolytus muticus Say 1 1 SENA 35 ph Celtis Scolytus quadrispinosus Say 1 1* SENA 37 ph Carya Scolytus rugulosus (Muller) 1 1 EX 38 ph Prunus Scolytus schevyrewi Semenov 1 1 EX 36 ph Ulmus Hexacolina Pycnarthrum hispidum (Ferrari) 1 MEX+NT 39 ph Ficus Micracina Hylocurus binodatus Wood 1 SENA xy Hylocurus flaglerensis Blackman 1* SENA 41 xy Hylocurus floridensis Atkinson 1* SENA 40 xy Hylocurus langstoni (Blackman) 1 1* SENA 42 xy Hylocurus parkinsoniae Blackman 1 MEX+NT 40 xy Hylocurus rudis (LeConte) 1 1 SENA 43 xy polyphagous Hylocurus schwarzi Blackman 1 SENA 41 xy Micracis suturalis LeConte? 1* SENA 44 xy polyphagous Micracis swainei Blackman 1? SENA 44 xy polyphagous Micracisella nanula (LeConte) 1 1 SENA 45 my polyphagous Micracisella opacithorax (Schedl) 1 MEX+NT 45 my polyphagous Pseudothysanoes acaciae (Blackman) 1 MEX+NT 46 ph Legume trees Pseudothysanoes dislocatus (Blackman) 1 SENA 46 ph Carya Pseudothysanoes frondicolens Wood 1* SWNA 47 ph Yucca Pseudothysanoes heliura Wood 1 MEX+NT 47 xy Pseudothysanoes huachucae Blackman 1 SWNA 48 ph Quercus in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Scolytini Scolytina Scolytus fagi Walsh 1? SENA 33 ph Celtis, Quercus Scolytus multistriatus (Marsham) 1 1 EX 34 ph Ulmus Scolytus muticus Say 1 1 SENA 35 ph Celtis Scolytus quadrispinosus Say 1 1* SENA 37 ph Carya Scolytus rugulosus (Muller) 1 1 EX 38 ph Prunus Scolytus schevyrewi Semenov 1 1 EX 36 ph Ulmus Hexacolina Pycnarthrum hispidum (Ferrari) 1 MEX+NT 39 ph Ficus Micracina Hylocurus binodatus Wood 1 SENA xy Hylocurus flaglerensis Blackman 1* SENA 41 xy Hylocurus floridensis Atkinson 1* SENA 40 xy Hylocurus langstoni (Blackman) 1 1* SENA 42 xy Hylocurus parkinsoniae Blackman 1 MEX+NT 40 xy Hylocurus rudis (LeConte) 1 1 SENA 43 xy polyphagous Hylocurus schwarzi Blackman 1 SENA 41 xy Micracis suturalis LeConte? 1* SENA 44 xy polyphagous Micracis swainei Blackman 1? SENA 44 xy polyphagous Micracisella nanula (LeConte) 1 1 SENA 45 my polyphagous Micracisella opacithorax (Schedl) 1 MEX+NT 45 my polyphagous Pseudothysanoes acaciae (Blackman) 1 MEX+NT 46 ph Legume trees Pseudothysanoes dislocatus (Blackman) 1 SENA 46 ph Carya Pseudothysanoes frondicolens Wood 1* SWNA 47 ph Yucca Pseudothysanoes heliura Wood 1 MEX+NT 47 xy Pseudothysanoes huachucae Blackman 1 SWNA 48 ph Quercus
Species TX OK Distribution Map FH Hosts Xylosandrus crassiusculus (Motschulsky) 1 1* EX 83 xm polyphagous Cryphalina Cryptocarenus seriatus Eggers 1 MEX+NT 84 my polyphagous Hypothenemus brunneus (Hopkins) 1 EX 85 ph-my polyphagous Hypothenemus californicus Hopkins 1 1* EX 86 ph-my polyphagous Hypothenemus columbi Hopkins 1 EX 87 ph-my polyphagous Hypothenemus crudiae (Panzer) 1 1* EX 88 ph-my polyphagous Hypothenemus dissimilis (Zimmermann) 1 1* SENA 89 ph-my polyphagous Hypothenemus distinctus Wood 1* 1 SENA 90 ph-my polyphagous Hypothenemus erectus LeConte 1 EX 90 ph-my polyphagous Hypothenemus eruditus Westwood 1 1* SE+NT 91 ph-my polyphagous Hypothenemus gossypii (Hopkins) 1* 1* MEX+NT 92 ph-my polyphagous Hypothenemus interstitialis (Hopkins) 1 1* SE+NT 93 ph-my polyphagous Hypothenemus miles (LeConte) 1 SENA 95 ph-my Hypothenemus obscurus (F.) 1 SE+NT 94 ph-my polyphagous Hypothenemus parvistriatus Wood 1* MEX+NT 95 ph-my Hypothenemus pubescens Hopkins 1 SE+NT 95 ph-my polyphagous Hypothenemus rotundicollis (Eichhoff) 1 1 SE+MEX 96 ph-my polyphagous Hypothenemus seriatus (Eichhoff) 1 1* SE+NT 97 ph-my polyphagous Hypothenemus sparsus Hopkins 1 MEX+NT 98 ph-my Hypothenemus squamosus (Hopkins) 1 MEX+NT 99 ph-my polyphagous Hypothenemus sp. undescribed 1 SENA ph-my Scolytogenes jalapae (Letzner) 1* SE+NT 99 ph-my Convolvulaceae Trischidias atoma (Hopkins) 1 1* SENA 100 myc polyphagous Trischidias exigua Wood 1* 1* SE+NT 101 myc Trischidias striata Atkinson 1* SENA 102 myc in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Xylosandrus crassiusculus (Motschulsky) 1 1* EX 83 xm polyphagous Cryphalina Cryptocarenus seriatus Eggers 1 MEX+NT 84 my polyphagous Hypothenemus brunneus (Hopkins) 1 EX 85 ph-my polyphagous Hypothenemus californicus Hopkins 1 1* EX 86 ph-my polyphagous Hypothenemus columbi Hopkins 1 EX 87 ph-my polyphagous Hypothenemus crudiae (Panzer) 1 1* EX 88 ph-my polyphagous Hypothenemus dissimilis (Zimmermann) 1 1* SENA 89 ph-my polyphagous Hypothenemus distinctus Wood 1* 1 SENA 90 ph-my polyphagous Hypothenemus erectus LeConte 1 EX 90 ph-my polyphagous Hypothenemus eruditus Westwood 1 1* SE+NT 91 ph-my polyphagous Hypothenemus gossypii (Hopkins) 1* 1* MEX+NT 92 ph-my polyphagous Hypothenemus interstitialis (Hopkins) 1 1* SE+NT 93 ph-my polyphagous Hypothenemus miles (LeConte) 1 SENA 95 ph-my Hypothenemus obscurus (F.) 1 SE+NT 94 ph-my polyphagous Hypothenemus parvistriatus Wood 1* MEX+NT 95 ph-my Hypothenemus pubescens Hopkins 1 SE+NT 95 ph-my polyphagous Hypothenemus rotundicollis (Eichhoff) 1 1 SE+MEX 96 ph-my polyphagous Hypothenemus seriatus (Eichhoff) 1 1* SE+NT 97 ph-my polyphagous Hypothenemus sparsus Hopkins 1 MEX+NT 98 ph-my Hypothenemus squamosus (Hopkins) 1 MEX+NT 99 ph-my polyphagous Hypothenemus sp. undescribed 1 SENA ph-my Scolytogenes jalapae (Letzner) 1* SE+NT 99 ph-my Convolvulaceae Trischidias atoma (Hopkins) 1 1* SENA 100 myc polyphagous Trischidias exigua Wood 1* 1* SE+NT 101 myc Trischidias striata Atkinson 1* SENA 102 myc
Species TX OK Distribution Map FH Hosts Phloeotribus liminaris (Harris) 1* 1* SENA 15 ph Prunus Phloeotribus pseudoscabricollis Atkinson 1 MEX+NT 16 ph Zanthoxylum Phloeotribus texanus Schaeffer 1 1* SE+MEX 17 ph Celtis Phloeosinina Chramesus chapuisii LeConte 1 1 SE+MEX 18 ph Celtis Chramesus hicoriae LeConte 1* 1* SENA 19 ph Carya Chramesus mimosae Blackman 1 MEX+NT 18 ph Legume trees Chramesus subopacus Schaeffer 1 MEX+NT 20 ph Celtis Chramesus varius Wood 1 MEX+NT 19 ph Legume trees Phloeosinus cristatus (LeConte) 1 SWNA 21 ph Cupressus Phloeosinus dentatus (Say) 1 1 SENA 22 ph Juniperus Phloeosinus hoferi Blackman 1 SWNA 25 ph Juniperus Phloeosinus scopulorum neomexicanus Blackman 1 SWNA 23 ph Juniperus Phloeosinus serratus (LeConte) 1 SWNA 24 ph Juniperus Phloeosinus taxodii Blackman 1 SE+MEX 21 ph Taxodium Hypoborina Chaetophloeus fasciatus (Blackman) 1 SWNA 26 ph Prosopis Chaetophloeus heterodoxus (Casey) 1 SWNA ph Rosaceae Chaetophloeus mexicanus Wood 1* MEX+NT 27 ph Eysenhardtia Chaetophloeus sulcatus Wood 1* MEX+NT 28 ph Composite shrubs Liparthrum squamosum (Blackman) 1*? SENA 29 ph Maclura pomifera Polygraphina Carphobius arizonicus Blackman 1* SWNA 30 ph Juniperus Carphoborus bicornus Wood 1* 1* SENA 31 ph Pinus Carphoborus bifurcus (Chapuis) 1* SENA 32 ph Pinus Carphoborus convexifrons Wood 1 SWNA 31 ph Pinus in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Phloeotribus liminaris (Harris) 1* 1* SENA 15 ph Prunus Phloeotribus pseudoscabricollis Atkinson 1 MEX+NT 16 ph Zanthoxylum Phloeotribus texanus Schaeffer 1 1* SE+MEX 17 ph Celtis Phloeosinina Chramesus chapuisii LeConte 1 1 SE+MEX 18 ph Celtis Chramesus hicoriae LeConte 1* 1* SENA 19 ph Carya Chramesus mimosae Blackman 1 MEX+NT 18 ph Legume trees Chramesus subopacus Schaeffer 1 MEX+NT 20 ph Celtis Chramesus varius Wood 1 MEX+NT 19 ph Legume trees Phloeosinus cristatus (LeConte) 1 SWNA 21 ph Cupressus Phloeosinus dentatus (Say) 1 1 SENA 22 ph Juniperus Phloeosinus hoferi Blackman 1 SWNA 25 ph Juniperus Phloeosinus scopulorum neomexicanus Blackman 1 SWNA 23 ph Juniperus Phloeosinus serratus (LeConte) 1 SWNA 24 ph Juniperus Phloeosinus taxodii Blackman 1 SE+MEX 21 ph Taxodium Hypoborina Chaetophloeus fasciatus (Blackman) 1 SWNA 26 ph Prosopis Chaetophloeus heterodoxus (Casey) 1 SWNA ph Rosaceae Chaetophloeus mexicanus Wood 1* MEX+NT 27 ph Eysenhardtia Chaetophloeus sulcatus Wood 1* MEX+NT 28 ph Composite shrubs Liparthrum squamosum (Blackman) 1*? SENA 29 ph Maclura pomifera Polygraphina Carphobius arizonicus Blackman 1* SWNA 30 ph Juniperus Carphoborus bicornus Wood 1* 1* SENA 31 ph Pinus Carphoborus bifurcus (Chapuis) 1* SENA 32 ph Pinus Carphoborus convexifrons Wood 1 SWNA 31 ph Pinus
Species TX OK Distribution Map FH Hosts Xyloterina Trypodendron scabricollis (LeConte) 1* 1 SENA 63 xm Pinus Xyleborina Ambrosiodmus lecontei Hopkins 1* MEX+NT 64 xm polyphagous Ambrosiodmus obliquus (LeConte) 1 SE+NT 65 xm polyphagous Ambrosiodmus rubricollis (Eichhoff) 1 1* EX 66 xm polyphagous Ambrosiodmus tachygraphus (Zimm.) 1* 1* SENA 64 xm polyphagous Ambrosiophilus atratus (Eichhoff) 1* 1* EX 67 xm polyphagous Anisandrus sayi Hopkins 1 SENA xm polyphagous Cnestus mutilatus (Blandford) 1 EX 68 xm polyphagous Cyclorhipidion bodoanum (Reitter) 1 1* EX 69 xm polyphagous Dryoxylon onoharensis (Murayama) 1 EX 70 xm polyphagous? Euwallacea validus (Eichhoff) 1? EX 67 xm polyphagous Xyleborinus artestriatus (Eichhoff) 1 EX xm polyphagous? Xyleborinus gracilis (Eichhoff) 1? SE+NT 71 xm polyphagous? Xyleborinus saxeseni (Ratzeburg) 1 1 EX 72 xm polyphagous Xyleborus affinis Eichhoff 1 1* SE+NT 73 xm polyphagous Xyleborus celsus Eichhoff 1 1* SENA 74 xm Carya Xyleborus ferrugineus (F.) 1 1 SE+NT 75 xm polyphagous Xyleborus horridus Eichhoff 1 MEX+NT 76 xm polyphagous Xyleborus impressus Eichhoff 1 1* SENA 77 xm polyphagous Xyleborus pubescens Zimmermann 1 SENA 78 xm Pinus Xyleborus similis Ferrari 1 EX 79 xm Xyleborus spinulosus Blandford 1* MEX+NT 80 xm polyphagous Xyleborus viduus Eichhoff 1 1* SENA 80 xm Xyleborus xylographus (Say) 1 1* SENA 81 xm Quercus Xylosandrus compactus (Eichhoff) 1 EX 82 xm polyphagous in Atlas and checklist of the bark and ambrosia beetles of Texas and Oklahoma (Curculionidae: Scolytinae and Platypodinae)
Species TX OK Distribution Map FH Hosts Xyloterina Trypodendron scabricollis (LeConte) 1* 1 SENA 63 xm Pinus Xyleborina Ambrosiodmus lecontei Hopkins 1* MEX+NT 64 xm polyphagous Ambrosiodmus obliquus (LeConte) 1 SE+NT 65 xm polyphagous Ambrosiodmus rubricollis (Eichhoff) 1 1* EX 66 xm polyphagous Ambrosiodmus tachygraphus (Zimm.) 1* 1* SENA 64 xm polyphagous Ambrosiophilus atratus (Eichhoff) 1* 1* EX 67 xm polyphagous Anisandrus sayi Hopkins 1 SENA xm polyphagous Cnestus mutilatus (Blandford) 1 EX 68 xm polyphagous Cyclorhipidion bodoanum (Reitter) 1 1* EX 69 xm polyphagous Dryoxylon onoharensis (Murayama) 1 EX 70 xm polyphagous? Euwallacea validus (Eichhoff) 1? EX 67 xm polyphagous Xyleborinus artestriatus (Eichhoff) 1 EX xm polyphagous? Xyleborinus gracilis (Eichhoff) 1? SE+NT 71 xm polyphagous? Xyleborinus saxeseni (Ratzeburg) 1 1 EX 72 xm polyphagous Xyleborus affinis Eichhoff 1 1* SE+NT 73 xm polyphagous Xyleborus celsus Eichhoff 1 1* SENA 74 xm Carya Xyleborus ferrugineus (F.) 1 1 SE+NT 75 xm polyphagous Xyleborus horridus Eichhoff 1 MEX+NT 76 xm polyphagous Xyleborus impressus Eichhoff 1 1* SENA 77 xm polyphagous Xyleborus pubescens Zimmermann 1 SENA 78 xm Pinus Xyleborus similis Ferrari 1 EX 79 xm Xyleborus spinulosus Blandford 1* MEX+NT 80 xm polyphagous Xyleborus viduus Eichhoff 1 1* SENA 80 xm Xyleborus xylographus (Say) 1 1* SENA 81 xm Quercus Xylosandrus compactus (Eichhoff) 1 EX 82 xm polyphagous
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.