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SNP List of Rice (Nipponbare) MNU Mutant Lines
<p>From the gene names (accessions) and genomic positions listed in the zip file, you can identify the mutant lines that carry specific mutations. The mutant lines are available from the National BioResource Project (NBRP).</p> <p>This list was generated by detecting SNPs using PED from NGS sequences of Nipponbare MNU-treated mutant lines developed at Kyushu University (Kubo et al. 2024). The reference genome used was IRGSP-1.0. The files are organized by chromosome, indicating the positions of mutations and the lines carrying them. Additionally, the mutation positions within the genes indicated by the Rice Annotation Project (RAP) and the primer sequences for amplifying these mutation sites are also included.</p> <p>By searching the files with a gene name, you can identify the mutations within that gene and the lines carrying those mutations.</p> <p>The files are tab-delimited lists that can be imported into Excel. To import, go to the Data tab in Excel, click "From Text/CSV," and select the chromosome file. Column 11 corresponds to the IRGSP accession. You can filter by accession or by the gene abbreviation in Column 10.</p> <p>To obtain seeds, please apply through the seed request page of NBRP (Kyushu University): <a href="https://miriq.agr.kyushu-u.ac.jp/request.php" target="_new" rel="noopener">https://miriq.agr.kyushu-u.ac.jp/request.php</a></p> <p>Column order is chromosome number, position, line name, ref, alt, genotype, allele frequency, number of reads, mutation type, gene name, RAP ID, position of nucleotide sequence of gene, position of amino acid sequence of gene, left primer, right primer, amplified size.</p> <p>The PED software is available at: <a href="https://github.com/akiomiyao/ped" target="_blank" rel="noopener">https://github.com/akiomiyao/ped</a></p> <p>Miyao, A., Kiyomiya, J.S., Iida, K. et al. Polymorphic edge detection (PED): two efficient methods of polymorphism detection from next-generation sequencing data. BMC Bioinformatics 20, 362 (2019). <a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2955-6" target="_blank" rel="noopener">https://doi.org/10.1186/s12859-019-2955-6</a></p>
FIGURE 1 in Rediscovery of the red-listed grass Isachne dimyloides (Poaceae: Micrairoideae) 130 years after type collection
FIGURE 1. Distribution map of Isachne dimyloides in India. 1. Type locality; 2. Present report.
Replication Package for 'The Impact of List Reduction for Language Agnostic Test Case Reducers'
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National and Kapodistrian University of Athens LC-TIMS-HRMS Target List
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Table ¹: List of fruit species consumed by kinkajous in Pijao and San Juan. in Notes on the ecology, activity patterns and behavior of the kinkajou (Potos flavus)
<p><b>Table ¹:</b> List of fruit species consumed by kinkajous in Pijao and San Juan.</p><table><tbody><tr><th><b>Family</b></th><th><b>Species</b></th><th><b>Locality</b></th></tr></tbody><tbody><tr><th></th><td></td><td><b>Pijao</b></td><td><b>San Įuan</b></td></tr><tr><th>Anacardiaceae</th><td><i>Spondias mombin</i></td><td><b>–</b></td><td>X</td></tr><tr><th>Araliaceae</th><td><i>Dendropanax macrophyllum</i></td><td>X</td><td><b>–</b></td></tr><tr><th>Moraceae</th><td><i>Ficus brevibracteata</i></td><td>X</td><td><b>–</b></td></tr><tr><th></th><td><i>Ficus dendrocida</i></td><td><b>–</b></td><td>X</td></tr><tr><th></th><td><i>Poulsenia armata</i></td><td>X</td><td><b>–</b></td></tr><tr><th>Sapotaceae</th><td><i>Pouteria baehniana</i></td><td><b>–</b></td><td>X</td></tr><tr><th>Ulmaceae</th><td><i>Ampelocera albertiae</i></td><td>X</td><td><b>–</b></td></tr><tr><th>Urticaceae</th><td><i>Cecropia telealba</i></td><td>X</td><td><b>–</b></td></tr><tr><th></th><td><i>Cecropia membanacea</i></td><td><b>–</b></td><td>X</td></tr></tbody></table>
Linked collectors and determiners for: List of the specimens of the Vanuatu National Herbarium (PVNH).
Natural history specimen data linked to collectors and determiners held within, "List of the specimens of the Vanuatu National Herbarium (PVNH)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/7c518f3a-4a12-48e5-8b81-589c94cca973">https://bionomia.net/dataset/7c518f3a-4a12-48e5-8b81-589c94cca973</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/7c518f3a-4a12-48e5-8b81-589c94cca973">https://gbif.org/dataset/7c518f3a-4a12-48e5-8b81-589c94cca973</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Lycopodiaceae of the Guianas: List of exsiccata and distribution maps.
Natural history specimen data linked to collectors and determiners held within, "Lycopodiaceae of the Guianas: List of exsiccata and distribution maps". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/8a5782ee-8260-4207-b59a-1498600db715">https://bionomia.net/dataset/8a5782ee-8260-4207-b59a-1498600db715</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/8a5782ee-8260-4207-b59a-1498600db715">https://gbif.org/dataset/8a5782ee-8260-4207-b59a-1498600db715</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: An annotated list of the flora of the ecological settlement «Raduha» (Kherson Region, Ukraine).
Natural history specimen data linked to collectors and determiners held within, "An annotated list of the flora of the ecological settlement «Raduha» (Kherson Region, Ukraine)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/82a9dbbc-99fb-4eec-a27d-17f0a4e81c69">https://bionomia.net/dataset/82a9dbbc-99fb-4eec-a27d-17f0a4e81c69</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/82a9dbbc-99fb-4eec-a27d-17f0a4e81c69">https://gbif.org/dataset/82a9dbbc-99fb-4eec-a27d-17f0a4e81c69</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: An annoted list of the flora of the botanical reserve of national importance «Shaby» (Kherson region, Ukraine)..
Natural history specimen data linked to collectors and determiners held within, "An annoted list of the flora of the botanical reserve of national importance «Shaby» (Kherson region, Ukraine).". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e92575ce-20c1-4ec8-952d-53206408e8a2">https://bionomia.net/dataset/e92575ce-20c1-4ec8-952d-53206408e8a2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e92575ce-20c1-4ec8-952d-53206408e8a2">https://gbif.org/dataset/e92575ce-20c1-4ec8-952d-53206408e8a2</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Annotated list of island lady beetles from Chile (Coleoptera: Coccinellidae).
Natural history specimen data linked to collectors and determiners held within, "Annotated list of island lady beetles from Chile (Coleoptera: Coccinellidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/fe130a2d-f549-425c-9e71-5276deb71714">https://bionomia.net/dataset/fe130a2d-f549-425c-9e71-5276deb71714</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/fe130a2d-f549-425c-9e71-5276deb71714">https://gbif.org/dataset/fe130a2d-f549-425c-9e71-5276deb71714</a>. Formatted as a Frictionless Data package.
Supplemental Table2 DEG List
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Données supplémentaires : Liste des arrêtés des hôpitaux/Services à vocation universitaire en Tunisie
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Figure 7 in The family Dolichopodidae (Diptera) of the Arabian Peninsula: identification key, an updated list of species and new records from Saudi Arabia
Figure 7. Distributional elements of the family Dolichopodidae found in Saudi Arabia.
Figure 2 in The family Dolichopodidae (Diptera) of the Arabian Peninsula: identification key, an updated list of species and new records from Saudi Arabia
Figure 2. The position of the collection sites in south-western Saudi Arabia.
FIGURE 2 in Red List of liverworts and hornworts for Réunion (Mascarene archipelago)
FIGURE 2: Distribution map of Andrewsianthus aberrans, 1×1 km Grid Square
FIGURE 1 in Red List of liverworts and hornworts for Réunion (Mascarene archipelago)
FIGURE 1: Structures of the categories from IUCN (2010), *DDt and DDd are additions from this work.
Figure 14 from: Sutcharit C, Panha S (2021) Systematic review of the dextral Hemiplecta Albers, 1850 (Eupulmonata, Ariophantidae) from Thailand with description of a new species and list of all the Indochinese species. ZooKeys 1047: 101-154. https://doi.org/10.3897/zookeys.1047.65735
Figure 14 AHemiplecta pharangensis, syntype SMF 226947/1 BHemiplecta platytaenia, syntype SMF 149894 CHemiplecta pluto, lectotype NHMUK 20200200.
Figure 3 from: Sutcharit C, Panha S (2021) Systematic review of the dextral Hemiplecta Albers, 1850 (Eupulmonata, Ariophantidae) from Thailand with description of a new species and list of all the Indochinese species. ZooKeys 1047: 101-154. https://doi.org/10.3897/zookeys.1047.65735
Figure 3 Genitalia, pallial system, mantle edge structure, and caudal region of Hemiplecta humphreysiana, specimen CUMZ 4573 from Singapore A whole genital organs B internal wall sculpture of penis, vagina and dart chamber C pallial system, lung cavity and ventral view of mantle edge D dorsal view of mantle edge showing shell lobes and E right view of caudal region.
Figure 6 from: Sutcharit C, Panha S (2021) Systematic review of the dextral Hemiplecta Albers, 1850 (Eupulmonata, Ariophantidae) from Thailand with description of a new species and list of all the Indochinese species. ZooKeys 1047: 101-154. https://doi.org/10.3897/zookeys.1047.65735
Figure 6 Genitalia, mantle edge structure and caudal region of Hemiplecta funerea, specimen CUMZ 4575 from Nan, Thailand A whole genital organs B internal wall sculpture of penis C internal wall sculpture of vagina D internal wall sculpture of dart chamber E ventral view of mantle edge F dorsal view of mantle edge showing right shell lobe and G right view of caudal region.
Figure 9 from: Sutcharit C, Panha S (2021) Systematic review of the dextral Hemiplecta Albers, 1850 (Eupulmonata, Ariophantidae) from Thailand with description of a new species and list of all the Indochinese species. ZooKeys 1047: 101-154. https://doi.org/10.3897/zookeys.1047.65735
Figure 9 Genitalia, mantle edge structure, and caudal region of Hemiplecta nemorosa sp. nov., paratype CUMZ 5253 from Maehongsorn, Thailand A whole genital organ and B internal wall sculpture of penis, vagina and dart chamber.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.