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7,849 results for “Conservancy”
FIGURE 24. A in Singapore's herpetofauna: updated and annotated checklist, history, conservation, and distribution
FIGURE 24. A) Enhydris enhydris, B) Fordonia leucobalia, C) Gerarda prevostiana, D) Homalopsis buccata, E) Phytolopsis punctata, F) Raclitia indica, G) Psammodynastes pictus, and H) Asthenodipsas laevis. Photographs by: Joan Lee [A], Alex Figueroa [B–D], Holly Siow [E], Dennis Nathaniel Chan [F], Nick Baker [G], and Kelvin K.P. Lim [H].
FIGURE 10. A in Singapore's herpetofauna: updated and annotated checklist, history, conservation, and distribution
FIGURE 10. A) Dogania subplana, B) Pelochelys cantorii, C) Pelochelys cantorii, D) Pelodiscus cf. sinensis, E) Aphaniotis fusca, F) Bronchocela cristatella, G) Calotes versicolor, and H) Draco fimbriatus. Photographs by: Kelvin K.P. Lim [A–B, D–E], Dr. Teo Eng Wah @ Vince Adam [C], Thio Hui Bing [F], Alex Figueroa [G], and Evan S.H. Quah [H].
Water charge and conservation of natural areas: An ex-ante assessment of a policy proposal for the Mantiqueira region, Brazil
<p>Dataset and code: static interregional computable general equilibrium economic model (ICGE) for the Brazilian Mantiqueira region. ICGE model can be implemented in GEMPACK software.</p>
Dataset (n=1671) of the publication "Engaging small-scale private forest owners for transformative change towards integrative conservation"
<p>The excel file contains the replies of small-scale private forest owners in Lower Saxony, Germany, to certain questions of a survey analyzed within the following publication: “Engaging small-scale private forest owners for transformative change towards integrative conservation” .<br> <br> The questions and responses included in this dataset cover their objectives, management activities, perspectives, and forest stand structures. Further details are provided in the second sheet of the file called “Code explanation”.<br> <br> More information about the methods of data collection can be found in the before-mentioned publication.</p>
Fig. 5. - The most highly conserved RIP amino acids. Our dataset comprised a in Phylogeny and domain architecture of plant ribosome inactivating proteins
Fig. 5. - The most highly conserved RIP amino acids. Our dataset comprised a curated selection from all the proteins available within NCBI's Conserved Domain Database containing a RIP domain. Colours indicate amino acids conserved in at least 70% of sequences. For the two pink-highlighted proteins, the black bolded amino acids were present in 70% of sequences at that position but were not present in the amino acid sequence of the crystal structure. (A) Sequence alignment. RIP domain consensus: the consensus sequence generated from the multiple sequence alignment in Jalview excluding gaps; 1QCI: the amino acid sequence of pokeweed antiviral protein (protein databank: 1QCI). The third line denotes the similarity in the two sequences as determined by Clustal Omega. (B) The crystal structure of 1QCI visualized in UCSF ChimeraX in surface representation; (C) mesh representation; and (D) cartoon representation. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Miniaturization does not change conserved spider anatomy, a case study on spider Rayforstia (Araneae: Anapidae).
<p>Stacks of histological sections and data from CLSM of spider <em>Rayforstia</em> (Araneae: Anapidae).</p>
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
<p>Mass spec. data from <a href="https://www.nature.com/articles/ncomms10127">Beckmann et. al 2015</a></p>
Fig. 8 in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 8. Effect of overexpression of different LjSK1 variants in L. japonicus hairy roots. Physiological parameters of L. japonicus wild type hairy roots transformed with LjSK1 variants: LjSK1 90–467 lacking the 89 N-terminal residues, LjSK1_K167A, LjSK1_Y298A, and native LjSK1 at 21 days post inoculation with rhizobium. Control roots were transformed with the empty T-DNA vector. Values shown are the average ± SEM of n = 6–16 individual hairy roots per construct. Letters above each graph indicate statistically significant differences (p <0.05) between samples using One-way ANOVA followed by Fischer's LSD post-hoc comparison.
Fig. 7 in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 7. Appearance of whole plants and nodules of L. japonicus hairy root lines transformed with the different LjSK1 variants. A, F) Control (empty vector); B, G) native LjSK1; C, H) LjSK1 K167A; D, I) LjSK1 Y298A; E, J) LjSK190-467. A-E) Representative whole plants with regenerated hairy roots. F-J) Images of nodules on regenerated hairy roots taken in bright-field (top panels) and with an RFP filter to visualize rhizobium colonisation (bottom panels). Scale bars in A-E are 5 cm and in F-G 2 mm.
Fig. 6. Western blot analysis with a p in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 6. Western blot analysis with a p-GSK-3α/β (6D3) (Santa Cruz Biotechnology, Inc.) monoclonal antibody raised against a phosphopeptide corresponding to amino acids residues surrounding Tyr279 of human GSK3α and Tyr216 of human GSK3β. Lane 1: recombinant LjSK1 and lane 2: LjSK1 Y298A variant. Both proteins have a GST-tag.
Fig. 4 in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 4. pH (A) and temperature (B) curves for LjSK1 together with standard error bars. Points represent the average value of three measurements. RLU refers to Relative Light Units and ΔRLU is for the difference between a control sample (without enzyme) and the corresponding sample with enzyme. Measurements were performed as described in section 5.3.
Fig. 2. A in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 2. A homology model of the LjSK1 – ATP complex based on the structure of human GSK3β (PDB:1J1B) (Aoki et al., 2004) after refinement with molecular dynamics simulations and docking of the ATP molecule at the ATP binding site. N- and C-terminal lobes are indicated by different colors and the G-loop and the activation loop are indicated in purple and green, respectively. Mutated residues are shown as stick models. Figure created using Pymol (DeLano, 2002). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Mutagenesis of a Lotus japonicus GSK3β/Shaggy-like kinase reveals functionally conserved regulatory residues
Fig. 1. Alignment of the primary structure of LjSK1, human GSK3β and AtSK3-2. Identical residues are shown in bold. Residues mutated to alanine are boxed. Residues constituting G-loop and the activation loop are shown in grey boxes and the respective structural feature is indicated. Black arrows indicate residues predicted to be in close proximity to the phosphates of ATP. Gaps, represented by dashes, were introduced into the sequences to optimize the alignment.
Simulation data for "Insights into the conservation and diversification of the molecular functions of YTHDF proteins"
<p>Datasets and analysis scripts to reproduce slab simulation results in Flores-Téllez et al., "Insights into the conservation and diversification of the molecular functions of YTHDF proteins", 2023.</p> <p>Analysis scripts are located in zipped folder "_2023_flores-tellez_YTHDF", simulation input files and protein density arrays are located in zipped folder "slab".</p>
Identifying 'climate keystone species' as a tool for conserving ecosystem functioning under climate change
<p><strong>Aim</strong>: Climate change affects ecological communities via impacts on species. The community's response to climate change can be represented as the temporal trend in a climate-related functional property that is quantified using a relevant functional trait. Noteworthy, some species influence this response in the community more strongly than others.</p> <p><strong>Innovation</strong>: Leveraging on the concept of keystone species, we propose that species with a strong effect on the community's functional response to climate change beyond their relative abundance can be considered as 'climate keystone species'. We develop a stepwise tool to determine species' effects on a community's climate response and identify climate keystone species. We quantify the species-specific effect by measuring the difference in the community's climate response with and without the species. Next, we identify climate keystone species as those with a strong residual effect after weighting with their relative abundances in the community.</p> <p><strong>Main</strong> <strong>Conclusions</strong>: To illustrate the use of the stepwise tool with empirical data, we identify climate keystone species that have a strong effect on the change in the average temperature niche in North American bird communities over time and find the identification tool ecologically relevant. Identification of climate keystone species can serve as an additional conservation method to efficiently protect ecosystem functions.</p>
Enzymatic beta-elimination in natural product deglycosylation: C-C bond cleavage as a specialty of a conserved mechanism
<p>Relevant data from the MD simulations contained in the paper 'Enzymatic b-elimination in natural product deglycosylation: C-C bond cleavage as a specialty of a conserved mechanism'.</p>
Conserved islands of divergence associated with adaptive variation in sockeye salmon are maintained by multiple mechanisms
<p>Local adaptation is facilitated by loci clustered in relatively few regions of the genome, termed genomic islands of divergence. The mechanisms that create and maintain these islands and how they contribute to adaptive divergence is an active research topic. Here, we use sockeye salmon as a model to investigate both the mechanisms responsible for creating islands of divergence and the patterns of differentiation at these islands. Previous research suggested that multiple islands contributed to adaptive radiation of sockeye salmon. However, the low-density genomic methods used by these studies made it difficult to fully elucidate the mechanisms responsible for islands and connect genotypes to adaptive variation. We used whole genome resequencing to genotype millions of loci to investigate patterns of genetic variation at islands and the mechanisms that potentially created them. We discovered 64 islands, including 16 clustered in four genomic regions shared between two isolated populations. Characterization of these four regions suggested that three were likely created by structural variation, while one was created by processes not involving structural variation. All four regions were small (< 600 kb), suggesting low recombination regions do not have to span megabases to be important for adaptive divergence. Differentiation at islands was not consistently associated with established population attributes. In sum, the landscape of adaptive divergence and the mechanisms that create it are complex; this complexity likely helps to facilitate fine-scale local adaptation unique to each population.</p>
FIGURE 6 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 6. Photos of Rafflesia banaoana from different localities. A–B. Mt. Cabcabulao. C. Mt. Ab-abaka. D. Kulaju Forest, Tinglayan Municipality. E–I. Mt. Magadgad. Photo Credits: A—P.L.Malabrigo Jr.; B, C, E–I—A.B.Tobias; D—R.A.Ogsar
FIGURE 5. Rafflesia leonardi. A1. Mature flower bud. A2. Dissected male flower bud. B1 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 5. Rafflesia leonardi. A1. Mature flower bud. A2. Dissected male flower bud. B1. Flower found in Calabagan Watershed Forest Reserve. B2. Flower found in Amro River Protected Landscape. C. Dissected female flower showing the characters of the processes, disk column, annulus structure and ovary. D. Enlarged view of the column of female flower showing short hairs on the surface of annulus interior. E1. Annulus structure of male flower showing white hairs on the surface of the annulus interior. E2. Disk under-surface of male flower. F1. View from above the disk of male flower bud. F2. Disk of mature flower. Photo credits: A1, A2, C, D, E1, E2, F1, F2— A.B.Tobias; B1—E.Agbayani; B2.—M.Aguan
FIGURE 4 in The reinstatement of Rafflesia banaoana (Rafflesiaceae), and implications for assessing species diversity and conservation requirements of the world's largest flowers
FIGURE 4. Habitat of Rafflesia banaoana and R. leonardi. A. Overlooking view of mountains in Banao Protected Landscape (BPL). B. Mature flower of R. banaoana (~43 cm across) in Mt. Magadgad. C. Habitat of R. banaoana in Mt. Mapga. D. R. banaoana with the park rangers of BPL. E. Habitat of R. leonardi in Calabgan Watershed Forest Reserve (CWFR) with the locals and staff of the protected area. F. Flower buds of R. leonardi in CWFR. G. Habitat of R. leonardi in Amro River Protected Landscape. H. Vegetation in the type locality of R. leonardi in Mt. Rabuaran, Sitio Kanapawan, Barangay Bolos Point.—Photos by A.B.Tobias
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.