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4,144 results for “ITS barcode”
DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and in response to immunotherapy
GEO Series GSE210057. Mus musculus; synthetic construct. 207 samples. Type: Other; Expression profiling by high throughput sequencing.
FIGURES 1–6. 1–3 in Two new species in the genus Destinoides (Hemiptera: Cicadellidae, Ledrinae) from China, with DNA barcoding data
FIGURES 1–6. 1–3. Destinoides hainanensis sp. nov. Holotype: 1. habitus, dorsal view; 2. habitus, lateral view; 3. face; 4–6. Destinoides rubeus sp. nov. Holotype: 4. habitus, dorsal view; 5. habitus, lateral view; 6. face; Scale bars = 1mm.
FIGURE 13 in Report on a new species of Plutomurus (Collembola, Tomoceridae) from a South Korean limestone cave, with notes on its DNA barcode
FIGURE 13. Maximum-likelihood tree (using GTR+I model, bootstrap=1000) of Plutomurus spp. based on COI gene. Neighbour joining tree (using K2-P model, bootstrap=1000) shared the similar topology. Node values represent likelihood bootstrap value.
FIGURE 2 in A new Mediterranean species of Dolistenus (Diplopoda, Platydesmida, Andrognathidae), with an updated key for the genus and the first contribution for a barcode database of European Platydesmida
FIGURE 2. Map showing the type localities of Dolistenus garciaparisi sp. nov., and sampled populations of D. savii, D. iberoalbus, Ebenostenus iberoniger and Fioria demangei included in this study.
FIGURE 1 in A new Mediterranean species of Dolistenus (Diplopoda, Platydesmida, Andrognathidae), with an updated key for the genus and the first contribution for a barcode database of European Platydesmida
FIGURE 1. Habitus in vivo: a) Dolistenus garciaparisi sp. nov. from Alcossebre, Castellón Province, Spain; b) Dolistenus savii from San Fratello, Messina Province, Sicily; c) Dolistenus iberoalbus from Avión, Ourense Province, Spain.
Figure 10 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 10. Grouvellinus nigerquadratus, sp. nov. (paratypes): (a) anteriodorsal aspect with pronotum; (b) anterioventral aspect with prosternum; (c) posterioventral aspect with meso-, metaventrite, and ventrites 1–5.
Figures 6–9 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figures 6–9. Habitus of the Grouvellinus species collected from the Tawan Hills Park. 6: G. luciaensis, sp. nov. (paratype male from Lucia River); 7: G. borneensis, sp. nov. (paratype male from Tawau River environment); 8: G. sp.1 (female from Tawau River environment); 9: G. sp.2 (female from Lucia River). Scale: 1 mm.
Figure 13 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 13. Grouvellinus cruxniger, sp. nov. (paratypes): (a) aedeagus, lateral; (b) aedeagus, ventral; (c) ovipositor (half), ventral. Scale bar = 0.1 mm.
Figure 1 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 1. (a) Co-authors and assistants of the Taxon Expedition to Tawau Hills Park, Sabah, Malaysian Borneo, performing microhabitat-specific sampling; (b) Co-authors during beetle collection at a blacklight trap installed in the vicinity of the Tawau River; (c) The first author (second from the right) instructing Taxon Expedition participants on the identification of riffle beetles; (d) the transportable molecular field laboratory at the Tawau Park Station; (e) Type locality of Grouvellinus borneensis, sp. nov., G. cruxniger, sp. nov., G. nigerquadratus, sp. nov., and collection site of G. sp. 1; (f) Type locality of Grouvellinus luciaensis, sp. nov., and collection site of G. andrekuipersi, G. nigerquadratus, sp. nov. and G. sp. 2.
Figure 15 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 15. Grouvellinus luciaensis, sp. nov. (paratypes): (a) aedeagus, lateral; (b) aedeagus, ventral; (c) ovipositor (half), ventral. Scale bar = 0.1 mm.
Figure 11 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 11. Grouvellinus nigerquadratus, sp. nov. (paratypes): (a) aedeagus, lateral; (b) aedeagus, ventral; (c) ovipositor (half), ventral. Scale bar = 0.1 mm.
FIGURES 21–24 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 21–24. Ixchela zapatai sp. nov. Female epigynum: 21, ventral view. 22, dorsal view. 23, frontal view. 24, lateral view. MSE: median septum of epigynum, PP: pore plates. Scale bars: 0.5 mm.
FIGURES 10–13 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 10–13. Ixchela panchovillai sp. nov. Female epigynum: 10, ventral view. 11, dorsal view. 12, frontal view. 13, lateral view. MSE: median septum of epigynum, PP: pore plates. Scale bars: 0.5 mm (Figs 12, 13), 1 mm (Figs 10, 11).
FIGURE 2 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURE 2. Maximum Likelihood gene tree (highest log: -3749.87), constructed with COI barcode sequences of Ixchela. Colors in the branches indicate species; same colors are in the bars, which represent the different species delimitation methods used for their validation. Red branches + blue circles indicate the new species. Numbers below the bars represent the species recovered in each species delimitation method (not considering the outgroup: P. dugesi): 1: morphology (M). 2: neighbor-joining (NJ). 3: GMYC. 4: ABGD with recursive partitions (RP). 5: ABGD with initial partitions (IP). 6: bPTP with IB. 7: bPTP with ML. Numbers above branches are Bootstrap support values (>50% significant), number below are posterior probabilities (PP) support values under BI.
FIGURE 1 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURE 1. Neighbour-Joining (NJ) with p-distances tree constructed with COI barcode sequences from different specimens and species of Ixchela. Colors in the branches indicate species, red branches + blue circles indicate the new species. Male cheliceral, male palps, and female epigyna are showed for each species to show morphological structures taxonomically important at species level. Number on branches represent Bootstrap support values (>50% significant).
FIGURE 31 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURE 31. Type localities of Ixchela panchovillai sp. nov. (green circle) and Ixchela zapatai sp. nov. (red circle), in the state of Oaxaca, Mexico.
FIGURE 7 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 7. Bayesian tree visualizing the results of the three different molecular species delimitation methods based on COI. ABGD: Automatic Barcode Gap Discovery; SP: reversed Statistical Parsimony; and bPTP: Bayesian Poisson tree process model. Posterior probability values are provided at the nodes.
FIGURE 5 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 5. Silhouettea ghazalae sp. nov., PMR VP4678, holotype, female, 27.35 + 6.29 mm, Qeshm Island, Persian Gulf: A: whole lateral view with the vertebrae numbered; B) close-up image of the caudal fin skeleton: EPU=epural, HS PU=haemal spine of preural centrum, HYP=hypural, NS PU=neural spine of preural, centrum, PHY=parhypural, PU=preural centrum, UR=urostyle, DPR, dorsal procurrent rays; VPR, ventral procurrent rays. X-ray by H.R. Esmaeili and U.K. Schliewen.
FIGURE 2 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 2. Silhouettea ghazalae sp. nov., PMR VP4678, holotype, female, 27.35 + 6.29 mm, Qeshm Island, Persian Gulf. A: freshly collected specimen; B: preserved specimen. Photos by R. Sadeghi (A), M. Kovačić (B).
FIGURE 1 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 1. Silhouettea ghazalae sp. nov., PMR VP4678, reversible stained holotype, female, 27.35 + 6.29 mm, Qeshm Island, Persian Gulf: A: chin with mental fold outlined, head down position; B: membranous edge at opercle, extension on the pectoral rays origin marked; C: preopercular edge, head sensory papillae rows resembling longitudinally dashed lines (e.g. row c) or transversal stiches (e.g. row ot). D: membranous edge at ventrolateral head ridge (vhr) divided from opercular membrane (om) by indentation (marked by arrow); E: nape and predorsal region naked; Photos by M. Kovačić.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.