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11,177 results for “identify”
Datasets for "A homogeneous time-resolved fluorescence screen to identify SIRT2 deacetylase and defatty-acylase inhibitors"
<p>This file contains the data presented in Figures in the manuscript by: Yang, Cassel, Boyle, Oppong, Ahn, and Weiser (2024) "A homogeneous time-resolved fluorescence screen to identify SIRT2 deacetylase and defatty-acylase inhibitors"</p>
Supplemental files associated with the the manuscript "Genetic screening and metabolomics identify glial adenosine metabolism as a therapeutic target in Parkinson's disease"
Open the record for dataset details and reuse information.
Full descripition of events identified
<p>Full description of the events identified and presented in the manuscript Table 2. “Tag statistics: The events are categorized into two dimensions: the source of the event (interface, design, hardware) and the reaction of the user”.</p>
Navigating the Maze of Mass Spectra: A Machine-Learning Guide to Identifying Diagnostic Ions in O-Glycan Analysis
<p>FragmentFactory_dataset is a pickled pandas DataFrame and should be loaded using the following code:</p> <pre><code>import pandas as pd FF_data = pd.read_pickle('/my_directory/FragmentFactory_dataset.pkl')</code></pre> <p> </p>
Data for: High-throughput micro-CT analysis identifies sex-dependent biomarkers of erosive arthritis in TNF-Tg mice and differential response to anti-TNF therapy
Open the record for dataset details and reuse information.
Data and code used for 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'
<p>This repository contains all data necessary to reproduce the results for the manuscript titled 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'.</p> <p> </p> <h2><strong>File structure</strong></h2> <p><strong>- analysis</strong></p> <p>The analysis subfolder contains all R scripts used for the study:</p> <p>1. Sample size estimation<br>2. Synchronisation of the timestamps<br>3. Processing of the raw data<br>4. Calculating the interrater agreement<br>5. Calculating all performance metrics and producing the plots</p> <p>In addition, the two subfolders contain the plots and result tables produced when running the scripts.</p> <p> </p> <p><strong>- data</strong></p> <p>The data folder contains all raw data as well as the processed data. A subfolder for each subject contains the video annotations (.eaf), the raw acceleration data (.csv) and the SENS motion classification data (.csv).</p> <p>The ActiPASS subfolder contains the raw acceleration files in binary file format as well as the ActiPASS output.</p> <p>The shiny subfolder contains the R code used for running the shiny app during data collection as well as the logged data and timestamps.</p> <p> </p> <p><span><strong><span>- documents</span></strong></span></p> <p><span>This folder contains any additional documents used in the study.</span></p> <p> </p> <h2><strong><span>Requirements</span></strong></h2> <p>The data processing and analysis was performed in R (Version 4.3.2). To run the full analysis in R, the following packages need to be installed:</p> <ul> <li>tidyverse</li> <li>xml2</li> <li>lubridate</li> <li>here</li> <li>dygraphs</li> <li>hms</li> <li>irr</li> <li>yardstick</li> <li>cowplot</li> <li>gt</li> </ul>
Evaluating the Capability of LLMs in Identifying Compilation Errors in Configurable Systems
<p>This dataset contains the log files of the queries performed on the LLMs, executed in the publication Albuquerque et al. 2024 (SBES-IIER 2024).</p>
Data for "Identifying and quantifying unexpected deep zooplankton diel vertical migration in a large deep lake (Lake Geneva)"
<p>The repository contains the data for the paper "Identifying and quantifying unexpected deep zooplankton diel vertical migration in a large deep lake (Lake Geneva)", submitted to Limnology & Oceanography. </p>
FIGURE 3 in DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China
FIGURE 3. Onycholyda fulvicornis, larval leaf-rolls (A–C) and mature larvae (D–H), all collected at Chanyuansi, Mt. Tianmushan, Zhejiang Province, and photographed indoors by A. Shinohara. A, Leaf-roll on Rubus hirsutus, April 16, 2014; B, leaf-roll on R. hirsutus, April 16, 2014; C, leaf-roll on R. hirsutus, April 14, 2015 (collected April 12); D, F, H, mature larva (sample no. 495), matured and photographed April 28, 2014 (collected April 16); E, G, mature larva (sample no. 573), matured and photographed April 23, 2015 (collected April 9). Remains of egg shells arrowed in A–C.
FIGURE 2 in DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China
FIGURE 2. Onycholyda xanthogaster, larval leaf-rolls (A–C) and larvae (D–J), photographs taken at the site about 32 km from Baoguosi on Mt. Emeishan, Sichuan Province (A–C) and indoors (D–J) by A. Shinohara in 2014. --- A, Two leaf-rolls on Rubus inopertus, May 24, seen from above; B, same leaf-rolls, seen from below; C, leaf-roll on R. inopertus, May 24; D, E, early instar larva, May 24; F, H, I, middle instar larva, May 24; G, late instar? larva, May 28; J, mature larva (sample no. 607), matured on May 30, photographed on June 2.
FIGURE 1 in DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China
FIGURE 1. The maximum likelihood tree based on 612 bp of mitochondrial CO1 gene sequence (-ln likelihood = 1722.8469). Numbers on branches indicate bootstrap values for ML and MP analyses (shown only for higher nodes with>50). Each terminal label represents the sample number (upper 28 individuals) or GenBank accession number (lower three).
FIGURE 4 in DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China
FIGURE 4. Onycholyda tianmushana, male, Kaishan Laodian, Mt. Tianmushan. --- A, Dorsal view; B, ventral view; C, head, frontodorsal view; D, left mandible, dorsal view; E, right mandible dorsal view. A–C, photographed by T. Komatsu.
FIGURE 2. A, C–G in On the pea crabs found in the chiton Tonicia chilensis (Frembly, 1827) (Mollusca, Polyplacophora: Chitonidae) identified as "Orthotheres sp." by Melzer & Schwabe (2008), and its reassignment to Calyptraeotheres Campos, 1990 (Crustacea: Pinnotheridae)
FIGURE 2. A, C–G, third maxilliped, outer view; B, juvenile, dorsal view, carapace width 1.5 mm. A, B, Dissodactylus lockingtoni Smith, 1870, Puerto Peñasco, Sonora, México and Campo El Pescador, San Felipe, Baja California, México, respectively; C, Clypeasterophilus rugatus (Bouvier, 1917), Jamaica; D, E, Austinotheres angelicus (Lockington, 1877), Los Angeles Bay and Campo El Pescador, San Felipe, Baja California, México; F, Enigmatheres canfieldi (Rathbun, 1918), Monterey, California, U.S.A.; G, Bonita mexicana Campos, 2009, Bahía Tortugas, Baja California Sur, México. A, C from Griffith (1987: fig. 8a, j); D, from Glassell (1935: plate 14, fig. 4); F, from Rathbun (1918: fig. 57); G, from Campos (2009: fig 3e). Scale bars, A, C= 0.5 mm; D–E= 1.0 mm; F= 0.57 mm; G=0.23 mm.
FIGURE 1 in On the pea crabs found in the chiton Tonicia chilensis (Frembly, 1827) (Mollusca, Polyplacophora: Chitonidae) identified as "Orthotheres sp." by Melzer & Schwabe (2008), and its reassignment to Calyptraeotheres Campos, 1990 (Crustacea: Pinnotheridae)
FIGURE 1. Third maxilliped: A, C, D, F, G, outer view; B, E, inner view. A, Calyptraeotheres granti (Fenucci, 1975), Puerto Quequén, Necochea, Buenos Aires, Argentina; B, Calyptraeotheres politus (Smith, 1870), Bahía Ancón, Perú; C, Calyptraeotheres sp., Muelle Dichato, Chile; D, Orthotheres unguifalcula (Glassell, 1936), female 4.0 x 5.0 mm, Puerto Peñasco, Sonora, México; E, Orthotheres barbatus (Desbonne, 1867), magnification 40X, Guadeloupe; F, Orthotheres strombi (Rathbun, 1905), not at scale, female 6.6 x 9.6 mm, Clearwater, Florida, U.S.A.; G, Orthotheres serrei (Rathbun, 1909), magnification 40X, Puerto Rico. A, B from Campos (1999: figs. 2b, c); C, redrawn from Melzer & Schwabe (2008: fig. 1e); D, from Campos (1989: fig. 3a); E–G, from Rathbun (1918: figs. 44a, 45 and 41 respectively). Scale bars, A= 0.43 mm; B= 0.39 mm; C= 0.10 mm.
FIGURE 3 in On the pea crabs found in the chiton Tonicia chilensis (Frembly, 1827) (Mollusca, Polyplacophora: Chitonidae) identified as "Orthotheres sp." by Melzer & Schwabe (2008), and its reassignment to Calyptraeotheres Campos, 1990 (Crustacea: Pinnotheridae)
FIGURE 3. Juvenile crab: A, B, E, Calyptraeotheres garthi (Fenucci, 1975), Gulf San Matias, North Patagonia, Argentina; C, D, Calyptraeotheres sp., Muelle Dichato, Chile. A, dorsal view; B, sternal somites and pleon; C, pleon; D, E, chelipeds. A, B, E, from Ocampo et al. (2017: figs. 1a, a´, 2a); C, D, from Melzer & Schwabe (2008 figs. 1d, f). Scale bars: A, B = 0.5 mm; C = 0.4 mm; D, E = 0.25 mm.
Identifying Unmaintained Projects in GitHub
<p>The dataset used in the paper "Identifying Unmaintained Projects in GitHub" accepted at 12th International Symposium on Empirical <em>Software Engineering</em> and Measurement (<em>ESEM),</em> 2018.</p>
FIGURE 1 in Integrative taxonomy identifies Macrobiotus papei, a new tardigrade species of the Macrobiotus hufelandi complex (Eutardigrada: Macrobiotidae) from the Udzungwa Mountains National Park (Tanzania)
FIGURE 1. Macrobiotus papei sp. nov.—habitus: A—dorso-ventral projection (holotype, Hoyer's medium, PCM); B–C— cuticular pores seen in PCM on the dorsal (B) and ventral (C) part of the body (paratype); D–E—cuticular pores seen in SEM on the dorsal (D) and ventral (E) part of the body (paratype). Scale bars in µm.
FIGURE 5 in Integrative taxonomy identifies Macrobiotus papei, a new tardigrade species of the Macrobiotus hufelandi complex (Eutardigrada: Macrobiotidae) from the Udzungwa Mountains National Park (Tanzania)
FIGURE 5. Macrobiotus papei sp. nov.—claws (paratypes): A–B—claws II and IV seen in PCM, with smooth and slightly dentate lunules, respectively; C–D—claws I and IV seen in SEM, with smooth and slightly dentate lunules, respectively. Figs A and B assembled from several photos. Scale bars in µm.
FIGURE 4 in Integrative taxonomy identifies Macrobiotus papei, a new tardigrade species of the Macrobiotus hufelandi complex (Eutardigrada: Macrobiotidae) from the Udzungwa Mountains National Park (Tanzania)
FIGURE 4. Macrobiotus papei sp. nov.—mouth opening and the oral cavity armature seen in SEM (paratype): A– mouth opening with six peribuccal sensory lobes and ten lamellae surrounded by large pores; B–C—the oral cavity armature of a single paratype seen in SEM from different angles. Arrows indicate pores in the irregular ring of pores surrounding the peribuccal lobes, filled arrowheads indicate teeth of the first band, empty arrowheads indicate teeth of the second band, the peaks in the dorsal ridge of the third band that correspond with teeth of the third band, in species with better developed oral cavity armatures are marked with "Ld" and "Md" (the dorso-median tooth comprises several small peaks visible as thickenings in PCM), whereas the teeth of the ventral portion are marked with "Mv" (medio-ventral tooth) and "Lv" (lateral teeth). Scale bars in µm.
FIGURE 7 in Integrative taxonomy identifies Macrobiotus papei, a new tardigrade species of the Macrobiotus hufelandi complex (Eutardigrada: Macrobiotidae) from the Udzungwa Mountains National Park (Tanzania)
FIGURE 7. Macrobiotus papei sp. nov.—egg chorion morphology seen in SEM: A—entire egg with clearly visible flexible filaments on the egg processes; B–C—processes with filaments of variable length and the surface between processes; D— detail of the egg surface; E–F—details of the terminal disc and its flexible filaments. Scale bars in µm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.