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12,683 results for “tolerability”
Data from: Identification of the submergence tolerance QTL come quick drowning1 (CQD1) in Arabidopsis thaliana
Global climate change is predicted to increase water precipitation fluctuations and lead to localized prolonged floods in agricultural fields and natural plant communities. Thus, understanding the genetic basis of submergence tolerance is crucial in order to improve plant survival under these conditions. In this study, we performed a quantitative trait locus (QTL) analysis in Arabidopsis to identify novel candidate genes for increased submergence tolerance by using Kas-1 and Col (gl1) parental accessions and their derived recombinant inbred lines (RILs). We measured survival after submergence in dark for a 13-day period and used median lethal time, LT50 values for the QTL analysis. A major QTL, the Come Quick, Drowning (CQD1) locus, was detected in 2 independent experiments on the lower arm of chromosome 5 involved in higher submergence tolerance in the parental accession Kas-1. For fine-mapping, we then constructed near isogenic lines (NILs) by backcrossing the CQD1 QTL region. We also analyzed QTL regions related to size, leaf number, flowering, or survival in darkness and none of the QTL related to these traits overlapped with CQD1. The submergence tolerance QTL, CQD1, region detected in this study includes genes that have potential to be novel candidates effecting submergence tolerance such as trehalose-6-phosphate phosphatase and respiratory burst oxidase protein D. Gene expression and functional analysis for these genes under submergence would reveal the significance of these novel candidates and provide new perspectives for understanding genetic basis of submergence tolerance.
Data from: Incorporating existing thermal tolerance into projections of compositional turnover under climate change
Aim: Observed, realized niche space often underestimates species' physiological tolerances due to interactions with other species, dispersal constraints, and because some combinations of influential environmental factors do not currently exist in the real world. Conversely, correlative ecological niche models rely on the assumption that the range of environmental conditions encompassed by a species' geographic distribution accurately reflects their environmental tolerances, including community-level approaches like Generalised Dissimilarity Modelling (GDM). We extend GDM to better understand what effect broader environmental tolerances could have on compositional turnover under climate change. Innovation: We show how GDM can be adjusted as a function of best-available estimates of the average ratio between realized and potential niche widths to modify projected temporal turnover. We demonstrate this approach by using the estimated niche ratios of Australian plant species (n=7184) relative to thermal extremes, and the rate at which this ratio varied with temperature. The modified GDMs showed existing thermal tolerance could reduce the turnover predicted by standard models under climate change by up to 11%. We further show how the reduction in expected turnover by 2090 will influence where a greater proportion of the current community will persist in a region. Main conclusions: We suggest that standard spatial GDMs and their modified versions represent the extremes of ecological niche perspectives (i.e. realized and potential) and the range of tolerance communities may have when responding to environmental change. GDM projections therefore identify the range of uncertainty associated with a critical model assumption, and as climate change continues, ongoing community monitoring could be used to validate the balance between the two possibilities.
Data from: Metal tolerance protein MTP6 affects mitochondrial iron and manganese homeostasis in cucumber
<p><span><b>NOTICE</b></span>: The Editor-in-Chief and Publisher of <i>Journal of Experimental Botany</i> have taken the decision to retract the article related to this dataset due to concern over image manipulation and duplication. Please note, Dryad cannot verify whether the underlying data published is reliable for reuse. Visit this link to view the retraction notice and concerns raised: <a href="https://doi.org/10.1093/jxb/ery342" rel="noopener noreferrer">https://doi.org/10.1093/jxb/ery342</a></p> <p>Members of the cation diffusion facilitator family have been identified in all kingdoms of life. They have been divided into three subgroups – Zn-CDF, Fe/Zn-CDF and Mn-CDF – based on their putative specificity to transported metal ions. The plant metal tolerance 6 (MTP6) proteins fall into the Fe/Zn-CDF subgroup, however their function in iron/zinc transport has not been confirmed yet. Here we characterize the MTP6 protein from cucumber. When expressed in yeast and protoplasts isolated from A. thaliana cells, CsMTP6 localized in mitochondria and contributed to the efflux of iron and manganese from the mitochondria. The immunolocalization of CsMTP6 in cucumber membranes confirmed that CsMTP6 is associated with mitochondria. The root expression and protein level of CsMTP6 were significantly up-regulated in conditions of iron deficiency and iron excess but were not affected by Mn availability. These results indicate that plant MTP6 proteins contribute to the distribution of iron and manganese between the cytosol and mitochondria of plant cells and are regulated by Fe to maintain the mitochondrial and cytosolic iron homeostasis under various Fe availability.</p>
Data from: Understanding genetic variation in in vivo tolerance to artesunate: implications for treatment efficacy and resistance monitoring
Artemisinin-based drugs are the front-line weapon in the treatment of human malaria cases, but there is concern that recent reports of slow clearing infections may signal developing resistance to treatment. In the absence of molecular markers for resistance, current efforts to monitor drug efficacy are based on the rate at which parasites are cleared from infections. However, some knowledge of the standing variation in parasite susceptibility is needed to identify a meaningful increase in infection half-life. Here, we show that five previously unexposed genotypes of the rodent malaria parasite Plasmodium chabaudi differ substantially in their in vivo response to treatment. Slower clearance rates were not linked to parasite virulence or growth rate, going against the suggestion that drug treatment will drive the evolution of virulence in this system. The level of variation observed here in a relatively small number of genotypes suggests existing 'resistant' parasites could be present in the population and therefore, increased parasite clearance rates could represent selection on pre-existing variation rather than de novo resistance events. This has implications for resistance monitoring as susceptibility may depend on evolved traits unrelated to drug exposure.
Data from: Comparative transcriptome and lipidome analyses reveal molecular chilling responses in chilling-tolerant sorghums
Chilling temperatures (0 to 15°C) are a major constraint for temperate cultivation of tropical-origin crops, including the cereal crop sorghum (Sorghum bicolor [L.] Moench). Northern Chinese sorghums have adapted to early-season chilling, but molecular mechanisms of chilling tolerance are unknown. We used RNA sequencing of seedlings to compare the chilling-responsive transcriptomes of a chilling-tolerant Chinese accession with a chilling-sensitive US reference line, and mass spectrometry to compare chilling-responsive lipidomes of four chilling-tolerant Chinese accessions with two US reference lines. Comparative transcriptomics revealed chilling-induced up-regulation of cold-response regulator C-repeat binding factor (CBF) transcription factor and genes involved in reactive oxygen detoxification, jasmonic acid (JA) biosynthesis, and lipid remodeling phospholipase Dα1 (PLDα1) gene in the chilling-tolerant Chinese line. Lipidomics revealed conserved chilling-induced increases in lipid unsaturation, as well as lipid remodeling of photosynthetic membranes that is specific to chilling-tolerant Chinese accessions. Our results point to CBF-mediated transcriptional regulation, galactolipid and phospholipid remodeling, and JA as potential molecular mechanisms underlying chilling adaptation in Chinese sorghums. These molecular systems underlying chilling response could be targeted in molecular breeding for chilling tolerance.
Data from: Avoidance, tolerance, and resistance to ectoparasites in nestling and adult tree swallows
We examined avoidance, tolerance, and resistance strategies of nestling and adult tree swallows Tachycineta bicolor in response to ectoparasitic blowflies Protocalliphora sialia. Tree swallows avoided settling in north-facing nest boxes early in the breeding season. These boxes were more likely to be parasitized later in the season, suggesting that box selection may facilitate blowfly avoidance. After experimentally manipulating blowfly intensity, we found that nestlings were generally tolerant of parasitism. Parasites significantly reduced nestling blood hemoglobin but had no effect on nestling body mass, primary feather growth, age at fledging, or fledging success. Parents of parasitized nestlings did not increase their food provisioning rate to promote nestling tolerance. Adult female tree swallows demonstrated both tolerance and resistance: blowfly parasitism had no effect on adult hemoglobin and body mass, and those with higher P. sialia-binding antibody levels had fewer blowfly larvae in their nests. Nestling antibodies were unrelated to blowfly intensity. Despite considerable variation among years, our results suggest that the costs of blowfly parasitism to nestling and adult tree swallows are modest, and limited to blood loss in nestlings. Future work should examine the effects of reduced blood hemoglobin on fledgling survival and the importance of parasite-specific antibodies.
Data from: Tolerance to gamma radiation in the tardigrade Hypsibius dujardini from embryo to adult correlate inversely with cellular proliferation
Tardigrades are highly tolerant to desiccation and ionizing radiation but the mechanisms of this tolerance are not well understood. In this paper, we report studies on dose responses of adults and eggs of the tardigrade Hypsibius dujardini exposed to gamma radiation. In adults the LD50/48h for survival was estimated at ~ 4200 Gy, and doses higher than 100 Gy reduced both fertility and hatchability of laid eggs drastically. We also evaluated the effect of radiation (doses 50 Gy, 200 Gy, 500 Gy) on eggs in the early and late embryonic stage of development, and observed a reduced hatchability in the early stage, while no effect was found in the late stage of development. Survival of juveniles from irradiated eggs was highly affected by a 500 Gy dose, both in the early and the late stage. Juveniles hatched from eggs irradiated at 50 Gy and 200 Gy developed into adults and produced offspring, but their fertility was reduced compared to the controls. Finally we measured the effect of low temperature during irradiation at 4000 Gy and 4500 Gy on survival in adult tardigrades, and observed a slight delay in the expressed mortality when tardigrades were irradiated on ice. Since H. dujardini is a freshwater tardigrade with lower tolerance to desiccation compared to limno-terrestrial tardigrades, the high radiation tolerance in adults, similar to limno-terrestrial tardigrades, is unexpected and seems to challenge the idea that desiccation and radiation tolerance rely on the same molecular mechanisms. We suggest that the higher radiation tolerance in adults and late stage embryos of H. dujardini (and in other studied tardigrades) compared to early stage embryos may partly be due to limited mitotic activity, since tardigrades have a low degree of somatic cell division (eutely), and dividing cells are known to be more sensitive to radiation.
Data from: The role of the environment in the evolution of tolerance and resistance to a pathogen
Defense against parasites can be divided into resistance, which limits parasite burden, and tolerance, which reduces pathogenesis at a given parasite burden. Distinguishing between the two and understanding which defense is favored by evolution in different ecological settings are important, as they lead to fundamentally different evolutionary trajectories of host-parasite interactions. We let the mosquito Aedes aegypti evolve under different food levels and with either no parasite, a constant parasite, or a coevolving parasite (the microsporidian Vavraia culicis). We then tested tolerance and resistance of the evolved lines on a population level at the two food levels. Exposure to parasites during evolution increased resistance and tolerance, but there were no differences between the lines evolved with coevolving or constant parasites. Mosquitoes that had evolved with food restriction had higher resistance than those evolved with high food but similar tolerance. The mosquitoes that had restricted food when being tested had lower tolerance than those with normal food, but there was no difference in resistance. Our results emphasize the complexity and dependence on environmental conditions of the evolution and expression of resistance and tolerance and help to evaluate some of the predictions about the evolution of host defense against parasites.
Data from: Trade-offs in juvenile growth potential vs. shade tolerance among subtropical rainforest trees on soils of contrasting fertility
Plant adaptation to gradients of light availability involves a well-studied functional trade-off, as does adaptation to gradients of nutrient availability. However, little is known about how these two major trade-offs interact, and thus, it remains unclear whether and how the nature of the growth–shade tolerance trade-off differs on soils of contrasting fertility. We asked whether juvenile growth–shade tolerance trade-offs differed in slope and elevation between tree assemblages on nutrient-rich basalt and nutrient-poor rhyolite soils in an Australian subtropical rain forest. We measured the growth of, and the range of light environments occupied by, juveniles (40–120 cm tall) of eight basalt specialists, six rhyolite specialists, and one generalist that was common on both substrates. In situ minimum light requirements were estimated from the 5th percentile of the distribution of naturally regenerated juveniles in relation to daily light transmittance. Stem growth was measured for 12–16 months across a wide range of light environments to estimate the light compensation point of growth of each species. Light compensation points of growth showed nearly a 1 : 1 correspondence with in situ minimum light requirements of species, indicating that whole-plant carbon balance is a key driver of ecological success in low light. Minimum light requirements were negatively correlated with relative growth rate in low light, but correlated positively with growth in high light. Soil type had no effect on either the slope or the elevation of this trade-off, all species aligning around a common growth–shade tolerance trade-off, but our results do show a wider range of growth rates and shade tolerance on the nutrient-rich basalt soil than on the nutrient-poor rhyolite. Our results suggest that adaptation to light availability involves fundamentally similar trade-offs on these two substrates of differing fertility. However, a wider range of growth rates and shade tolerance on the nutrient-rich basalt soil than on the nutrient-poor rhyolite may help to explain the higher species richness and greater structural complexity of forest stands on the former substrate.
Data from: Establishment of a refined oral glucose tolerance test in pigs, and assessment of insulin, glucagon and glucagon-like peptide-1 responses
Diabetes mellitus is increasing worldwide and reliable animal models are important for progression of the research field. The pig is a commonly used large animal model in diabetes research and the present study aimed to refine a model for oral glucose tolerance test (OGTT) in young growing pigs, as well as describing intravenous glucose tolerance test (IVGTT) in the same age group. The refined porcine OGTT will reflect that used in children and adolescents. Eighteen pigs were obtained one week after weaning and trained for two weeks to bottle-feed glucose solution, mimicking the human OGTT. The pigs subsequently underwent OGTT (1.75 g/kg BW) and IVGTT (0.5 g/kg BW). Blood samples were collected from indwelling vein catheters for measurements of glucose and the diabetes related hormones insulin, glucagon and active glucagon-like peptide-1. The study confirmed that pigs can be trained to bottle-feed glucose dissolved in water and thereby undergo an OGTT more similar to the human standard OGTT than previously described methods in pigs. With the refined method for OGTT, oral intake only consists of glucose and water, which is an advantage over previously described methods in pigs where glucose is given together with feed which will affect glucose absorption. Patterns of hormonal secretion in response to oral and intravenous glucose were similar to those in humans; however, the pigs were more glucose tolerant with lower insulin levels than humans. In translational medicine, this refined OGTT and IVGTT methods provide important tools in diabetes research when pigs are used as models for children and adolescents in diabetes research.
Data from: Local adaptation is associated with zinc tolerance in Pseudomonas endophytes of the metal-hyperaccumulator plant Noccaea caerulescens
Metal hyperaccumulating plants, which are hypothesised to use metals for defence against pests and pathogens, provide a unique context in which to study plant–pathogen co-evolution. Previously, we demonstrated that the high concentrations of zinc found in leaves of the hyperaccumulator Noccaea caerulescens provide protection against bacterial pathogens, with a potential trade-off between metal-based and pathogen-induced defences. We speculated that an evolutionary arms race between zinc-based defences in N. caerulescens and zinc tolerance in pathogens might have driven the development of the hyperaccumulation phenotype. Here, we investigate the possibility of local adaptation by bacteria to the zinc-rich environment of N. caerulescens leaves and show that leaves sampled from the contaminated surroundings of a former mine site harboured endophytes with greater zinc tolerance than those within plants of an artificially created hyperaccumulating population. Experimental manipulation of zinc concentrations in plants of this artificial population influenced the zinc tolerance of recovered endophytes. In laboratory experiments, only endophytic bacteria isolated from plants of the natural population were able to grow to high population densities in any N. caerulescens plants. These findings suggest that long-term co-existence with zinc hyperaccumulating plants leads to local adaptation by endophytic bacteria to the environment within their leaves.
Data from: Plasticity for desiccation tolerance across Drosophila species is affected by phylogeny and climate in complex ways
Comparative analyses of ectotherm susceptibility to climate change often focus on thermal extremes, yet responses to aridity may be equally important. Here we focus on plasticity in desiccation resistance, a key trait shaping distributions of Drosophila species and other small ectotherms. We examined the extent to which 32 Drosophila species, varying in their distribution, could increase their desiccation resistance via phenotypic plasticity involving hardening, linking these responses to environment, phylogeny and basal resistance. We found no evidence to support the seasonality hypothesis; species with higher hardening plasticity did not occupy environments with higher and more seasonal precipitation. As basal resistance increased, the capacity of species to respond via phenotypic plasticity decreased, suggesting plastic responses involving hardening may be constrained by basal resistance. Trade-offs between basal desiccation resistance and plasticity were not universal across the phylogeny and tended to occur within specific clades. Phylogeny, environment and trade-offs all helped to explain variation in plasticity for desiccation resistance but in complex ways. These findings suggest some species have the ability to counter dry periods through plastic responses, whereas others do not; and this ability will depend to some extent on a species' placement within a phylogeny, along with its basal level of resistance.
Data from: Indirect genetic effects underlie oxygen-limited thermal tolerance within a coastal population of chinook salmon
With global temperatures projected to surpass the limits of thermal tolerance for many species, evaluating the heritable variation underlying thermal tolerance is critical for understanding the potential for adaptation to climate change. We examined the evolutionary potential of thermal tolerance within a population of chinook salmon (Oncorhynchus tshawytscha) by conducting a full-factorial breeding design and measuring the thermal performance of cardiac function and the critical thermal maximum (CTmax) of offspring from each family. Additive genetic variation in offspring phenotype was mostly negligible, although these direct genetic effects explained 53% of the variation in resting heart rate (fH). Conversely, maternal effects had a significant influence on resting fH, scope for fH, cardiac arrhythmia temperature and CTmax. These maternal effects were associated with egg size, as indicated by strong relationships between the mean egg diameter of mothers and offspring thermal tolerance. Because egg size can be highly heritable in chinook salmon, our finding indicates that the maternal effects of egg size constitute an indirect genetic effect contributing to thermal tolerance. Such indirect genetic effects could accelerate evolutionary responses to the selection imposed by rising temperatures and could contribute to the population-specific thermal tolerance that has recently been uncovered among Pacific salmon populations.
Data from: Inconsistent use of multiple comparison corrections in studies of population genetic structure: are some type I errors more tolerable than others?
Studies of genetic population structure often involve numerous tests of Hardy-Weinberg equilibrium (HWE), linkage disequilibrium (LD), and genetic differentiation. Tests of HWE or LD are important precursors to population structure assessments. When conducting multiple related statistical tests, type 1 error increases, e.g., familywise error rate (FWER) inflation. FWER inflation can alter the results of statistical tests and thus the conclusions. Authors are aware of the need to control for FWER inflation, but there has been low consistency of use. Furthermore, there is a potential for the choice of correction methods to be exploited to selectively use FWER corrections to avoid data exclusion or to result in increased the rejection of null hypotheses. We surveyed literature from 2011-2013 to determine if studies of population structure assess LD and HWE and if FWER corrections were applied consistently across different types of genetic differentiation, linkage disequilibrium, and Hardy-Weinberg equilibrium tests. We found a lack of documentation of FWER corrections in studies, and we advocate for authors to be more cognizant in reporting their corrections. We also found significantly inconsistent FWER corrections, with a bias towards less restrictive correction on genetic differentiation and more restrictive corrections with LD and HWE. While varied adjustments of FWER for different types of analyses might be justified, papers with inconsistent usage across tests of HWE, LD and genetic differentiation did not present rationale for their FWER corrections. We also found a lack of documentation of HWE, LD and FWER corrections in studies. We encourage authors to report statistical tests and related FWER corrections, use FWER corrections consistently or justify their different methods in the same study.
Data from: A positive genetic correlation between hypoxia tolerance and heat tolerance supports a controversial theory of heat stress
We used quantitative genetics to test a controversial theory of heat stress, in which animals overheat when the demand for oxygen exceeds the supply. This theory, referred to as oxygen- and capacity-limited thermal tolerance, predicts a positive genetic correlation between hypoxia tolerance and heat tolerance. We demonstrate the first genetic correlation of this kind in a model organism, Drosophila melanogaster. Genotypes more likely to fly under hypoxic stress (12% O2) were also more likely to fly under heat stress (39°C). This finding prompts new questions about mechanisms and limits of adaptation to heat stress.
Data from: Grassland plants show no relationship between leaf drought tolerance and soil moisture affinity, but rapidly adjust to changes in soil moisture
1. Assessing drought tolerance and the ability of plants to adjust to changes in available water resources is crucial for understanding current and future distributions of plant species. While turgor loss point (πtlp) has been recognized as a direct determinant of drought tolerance in woody plants, information on it for grassland species is largely missing. 2. We first validated a rapid method to estimate πtlp for grassland species, using osmometry measurements (πtlp-osm) of osmotic potential at full hydration (πo-osm), originally proposed for woody species. We confirmed that πo-osm was tightly positively related to πtlp measured by the classic pressure–volume curve (πtlp-pv). Cell wall elasticity was not important in the maintenance of turgor and neither specific leaf area nor leaf dry matter content influenced πtlp. 3. We then studied the relationship between πtlp-osm measured under controlled conditions and species' soil moisture affinity (Ellenberg indicator values) in 40 diverse grassland species from the full range of soil moisture conditions found in temperate grasslands. On a subset of 12 species, we studied the adjustment in πtlp-osm to drought stress and recovery from drought. 4. We hypothesized that dry grassland species are better adapted to drier conditions by having comparatively higher leaf drought tolerance (more negative πtlp) and a better ability to adjust to acute drought stress. 5. We found that πtlp-osm was unrelated to species' soil moisture affinity. However, all species developed higher leaf drought tolerance by decreasing πtlp-osm after seven weeks of drought stress. After only one week of recovery, all species reduced the leaf drought tolerance back to the πtlp-osm level comparable with non-stressed plants. 6. Our results considerably extend the relationship between πo-osm and πtlp, originally defined for woody species, and thus propose a yet unexploited direct method for assessing leaf drought tolerance via turgor loss point in herbaceous species. However, the lack of relationship between πtlp and soil moisture affinity suggests that, unlike in woody plants, leaf-level drought tolerance in grassland plants does not fully translate into whole-plant drought resistance, suggesting an importance of other drought resistance strategies.
Software Architecture Catalog for Fault-Tolerant Containerized Systems
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TECHNOLOGY AND METHODS OF TOLERANCE FORMATION IN YOUTH GROUPS.
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FORMATION OF COMMUNICATIVE COMPETENCE AND TOLERANCE OF JUNIOR SCHOOLCHILDREN THROUGH THE DEVELOPMENT OF LITERARY AND CREATIVE ABILITIES.
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Data of Tolerance for Corruption and Descriptive Social Norm
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