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6,175 results for “Composition”
FIGURE 11 in A new species of the genus Celebesia Bolívar, 1917 (Orthoptera: Acrididae Catantopinae) from Sulawesi Island with notes on composition of the tribe Mesambriini
FIGURE 11. Map of Sulawesi Island with distribution of Celebesia species.
Ternary lipid composition in a flat geometry
<p>will be written</p>
Supplemental videos for "Composition and decomposition of visuomotor maps during manual tracking", by Bernier et al.,
<p>The videos depict representative trials of naïve participants being exposed to each mapping.</p>
IODP Expedition 368X Core composite images
<p>A digital composite image (PNG) is made for each core comprising core sections scanned using a line-scan camera. The composite layout is equivalent to traditional core table photos. Top left is top of core; color and meter rule references are included.</p>
Data from: Accelerated degradation of polyetheretherketone and its composites in the deep sea
The performance of polymer composites in seawater under high hydrostatic pressure (typically few tens of MPa), for simulating exposures at great depths in seas and oceans, has been little studied. In this paper, PEEK and its composites reinforced by carbon fibers and glass fibers were prepared, respectively. And the seawater environments with different seawater hydrostatic pressure ranging from normal pressure to 40 MPa was simulated with special equipment, in which the seawater absorption and wear behaviors of PEEK and PEEK-based composites were examined in situ. The effects of seawater hydrostatic pressure on the mechanical properties, wear resistance and microstructure of PEEK and its composites were focused on. The results showed that seawater absorption of PEEK and its composites were greatly accelerated by increased hydrostatic pressure in the deep sea. And affected by seawater absorption, both for neat PEEK and composites, the degradation on mechanical properties, wear resistance and crystallinity were induced, the degree of which were increasingly serious with the hydrostatic pressure of seawater environment increasing. And there existed a good correlation in an identical form of exponential function between the wear rate and the seawater hydrostatic pressure. Moreover, the corresponding mechanisms of the effects of deep-sea hydrostatic pressure were also discussed.
Data from: The relative contribution of species richness and species composition to ecosystem functioning
The influence of species diversity on ecosystem functioning has been the subject of many experiments and remains a key question for ecology and conservation biology. However, the fact that diversity cannot be manipulated without affecting species composition makes this quest methodologically challenging. We used partial Mantel tests to evaluate the relative importance of diversity and of composition on biomass production. Here, we applied partial Mantel tests (controlling for the other variable) on two datasets, the Jena (2002–2008) and the Grandcour (2008–2009) Experiment. In both experiments, plots were sown with different numbers of species to unravel mechanisms underlying the biodiversity-ecosystem functioning relationships. Contrary to Jena, plots were not mowed nor weeded in Grandcour, allowing external species to establish. Based on the diversity–ecosystem functioning and competition theories, we tested two predictions: 1) the contribution of composition should increase with time; 2) the contribution of composition should be more important in non-weeded than in controlled systems. We found support for the second hypothesis, but not for the first. On the contrary, the contribution of species richness became markedly more important few years after the start of the Jena Experiment. This result can be interpreted as species complementarity, rather than intraspecific competition, being the driving force in this system. Finally, we explored to what extent the estimated relative importance of both factors could vary when measured on different spatial scales of the experiment (in our case, increasing the number of plots included in the analyses). We found a strong effect of scale, suggesting that comparisons between studies, and more generally the extrapolation of results from experiments to natural situations, should be made with caution.
Data from: Pollinator adaptation and the evolution of floral nectar sugar composition
A longstanding debate concerns whether nectar sugar composition evolves as an adaptation to pollinator dietary requirements or whether it is 'phylogenetically constrained'. Here we use a modeling approach to evaluate the hypothesis that nectar sucrose proportion (NSP) is an adaptation to pollinators. We analyze ~2,100 species of asterids, spanning several plant families and pollinator groups (PGs), and show that the hypothesis of adaptation cannot be rejected: NSP evolves toward two optimal values, high NSP for specialist-pollinated and low NSP for generalist-pollinated plants. However, the inferred adaptive process is weak, suggesting that adaptation to PG only provides a partial explanation for how nectar evolves. Additional factors are therefore needed to fully explain nectar evolution and we suggest that future studies might incorporate floral shape and size and the abiotic environment into the analytical framework. Further, we show that NSP and PG evolution are correlated – in a manner dictated by pollinator behavior. This contrasts with the view that a plant necessarily has to adapt its nectar composition to ensure pollination but rather suggests that pollinators adapt their foraging behavior or dietary requirements to the nectar sugar composition presented by the plants. Finally, we document unexpectedly sucrose-poor nectar in some specialized nectarivorous bird-pollinated plants from the Old World, which might represent an overlooked form of pollinator deception. Thus, our broad study provides several new insights into how nectar evolves and we conclude by discussing why maintaining the conceptual dichotomy between adaptation and constraint might be unhelpful for advancing this field.
Data from: Plant host identity and soil macronutrients explain little variation in sapling endophyte community composition: is disturbance an alternative explanation?
1. Bacterial endophytes may be fairly host specific; nonetheless, an important subset of taxa may be shared among numerous host species forming a community-wide core microbiome. Moreover, other key factors, particularly the supply of limiting macronutrients and disturbances, may supersede the importance of host identity. 2. We tested the following four non-mutually exclusive hypotheses: 1. The Host Identity Hypothesis: endophytes vary substantially among different host plant species. 2. The Core Microbiome Hypothesis: a subset of microbial taxa will be shared among all host plant species. 3. The Soil Resource Supply Hypothesis: endophytes vary substantially among habitats with experimentally elevated levels of macronutrients. 4. The Disturbance-Disruption Hypothesis: disturbances created by the periodic application of antibiotics structure bacterial endophyte communities. 3. We tested these hypotheses by characterizing endophytes using high-throughput sequencing among seedlings of five phylogenetically diverse tree species nested within a long-term, full factorial nitrogen, phosphorus, and potassium soil fertilization experiment. We artificially disturbed one of our focal species by applying antibiotics every 10-14 days for 29 months within the soil (N,P,K) fertilization experiment. 4. While we detected a significant effect of host identity and soil nutrient additions, together they explained little variation in endophyte community composition (< 10%). We found unequivocal evidence for a core microbiome shared by all species. Specifically, we found nine OTUs were present among 95% or more of all control saplings, representing a third of the total reads. These bacterial taxa belonged to the Actinobacteria. 5. In contrast, disturbance (antibiotics) explained more endophyte variation than all nutrient addition combinations combined and twice the variation explained by host identity for all five tree species. Synthesis: Our results challenge the idea that host identity is a primary filter shaping bacterial endophyte communities; this suggests that many of the same bacterial taxa occur inside plant hosts even if those host plants are phylogenetically diverse. Moreover, we documented a distinct core microbiome shared among our five focal tree species. Finally, we found that disturbance was an important driver of microbial community composition, which parallels the importance of disturbance in other areas of community ecology.
Data from: Elevated success of multispecies bacterial invasions impacts community composition during ecological succession
Successful microbial invasions are determined by a species' ability to occupy a niche in the new habitat whilst resisting competitive exclusion by the resident community. Despite the recognised importance of biotic factors in determining the invasiveness of microbial communities, the success and impact of multiple concurrent invaders on the resident community has not been examined. Simultaneous invasions might have synergistic effects, for example if resident species need to exhibit divergent phenotypes to compete with the invasive populations. We used three phylogenetically diverse bacterial species to invade two compositionally distinct communities in a controlled, naturalised in vitro system. By initiating the invader introductions at different stages of succession, we could disentangle the relative importance of resident community structure, invader diversity and time pre-invasion. Our results indicate that multiple invaders increase overall invasion success, but do not alter the successional trajectory of the whole community.
Data from: Preen oil chemical composition encodes individuality, seasonal variation and kinship in black kites Milvus migrans
Evidence that bird odour can encode social information that can be used in chemical communication is growing, but is restricted to a few taxonomic groups. Among birds, diurnal raptors (i.e. birds from the Accipitriformes and Falconiformes order) have always been considered as mainly relying on their visual abilities. Although they seem to have a functional sense of smell, whether their odour can convey social information has yet to be determined. Combining gas-chromatography-mass-spectrometry (GCMS) and microsatellite data, we tested whether chemical compounds from preen gland secretions can encode sex, age, individuality, seasonal differences and genetic relatedness in the gregarious accipitriform black kite Milvus migrans. While no differences in preen oil composition were found between age classes, an individual signature was detected. While a seasonal variation was found in both sexes, compounds differ between sexes in the non-breeding season. Finally, a significant correlation between chemical proximity and genetic proximity was detected in male-male dyads and male-female dyads but not in female-female dyads. Our study provides the first evidence in raptors that preen secretion can convey information that may potentially be used in individual recognition, reproductive synchronization and inbreeding avoidance, and suggests that raptors may rely upon their olfactory abilities more than previously thought. This study opens promising avenues for further studies in raptor chemical communication.
Data from: Spatiotemporally explicit demographic modelling supports a joint effect of historical barriers to dispersal and contemporary landscape composition on structuring genomic variation in a red-listed grasshopper
Inferring the processes underlying spatial patterns of genomic variation is fundamental to understand how organisms interact with landscape heterogeneity and to identify the factors determining species distributional shifts. Here, we employ genomic data (ddRADSeq) to test biologically-informed models representing historical and contemporary demographic scenarios of population connectivity for the Iberian cross-backed grasshopper Dociostaurus hispanicus, a species with a narrow distribution that currently forms highly fragmented populations. All models incorporated biological aspects of the focal taxon that could hypothetically impact its geographical patterns of genomic variation, including (a) spatial configuration of impassable barriers to dispersal defined by topographic landscapes not occupied by the species, (b) distributional shifts resulted from the interaction between the species bioclimatic envelope and Pleistocene glacial cycles, and (c) contemporary distribution of suitable habitats after extensive land clearing for agriculture. Spatiotemporally-explicit simulations under different scenarios considering these aspects and statistical evaluation of competing models within an Approximate Bayesian Computation (ABC) framework supported spatial configuration of topographic barriers to dispersal and human-driven habitat fragmentation as the main factors explaining the geographical distribution of genomic variation in the species, with no apparent impact of hypothetical distributional shifts linked to Pleistocene climatic oscillations. Collectively, this study supports that both historical (i.e., topographic barriers) and contemporary (i.e., anthropogenic habitat fragmentation) aspects of landscape composition have shaped major axes of genomic variation in the studied species and emphasizes the potential of model-based approaches to gain insights into the temporal scale at which different processes impact the demography of natural populations.
Data from: Evidence for long-term shift in plant community composition under decadal experimental warming
Summary: 1. Long-term, slow ecological processes such as changes in plant community structure and composition strongly regulate ecosystem responses to climate change. Shifts in plant community are expected in chronically altered environments under warming. However, experimental evidence for long-term shifts and the associated mechanisms is still scarce in temperate grasslands. 2. Here, we explore the long-term responses of a prairie plant community to 14-year (2000-2013) manipulations of climate warming and clipping in Oklahoma, USA. Infrared heaters were used to elevate soil temperature by about 2 ºC all year round and annual clipping was applied to mimic hay harvest. 3. Community composition was resistant to experimental warming in the first seven years, but started to show responses starting from the eighth year; clipping consistently affected community composition over the years. Compositional change under long-term warming was mainly due to one invasive species and three dominant species. The negative correlations in relative abundance between the invasive species and the dominant species suggest inter-specific competition. Community structure (i.e., richness, evenness and diversity) had no overall response to experimental warming. However, in 2007, the extreme wet year, warming reduced species richness by 30%. Clipping promoted species richness by 10% on average over the 14 years but decreased community evenness. Warming did not interact with clipping in influencing the plant community variables. 4. Synthesis: Our study provides experimental evidence for long-term shifts in plant community composition due to warming and revealed novel mechanisms (i.e., species invasion and associated biotic interactions) underlying the long-term shift. The results also suggest that climate extremes may elicit or advance community responses to climate warming. The findings highlight that long-term climate change experiments are essential to reveal potential shifts in community composition.
Data from: Gentamicin-loaded silk/nanosilver composite scaffolds for MRSA-induced chronic osteomyelitis
Methicillin-resistant staphylococcus aureus (MRSA) often induces chronic osteomyelitis and then bone defects. Here, gentamicin-loaded silk/nanosilver composite scaffolds were developed to treat MRSA-induced chronic osteomyelitis. AgNO3 was reduced with silk as a reducing agent in formic acid, forming silver nanoparticles in situ that were distributed uniformly in the composite scaffolds. Superior antibacterial properties against MRSA were achieved for the composite scaffolds, without the compromise of osteogenesis capacity. Then gentamicin was loaded on the scaffolds for better treatment of osteomyelitis. In vivo results showed effective inhibition of the growth of MRSA bacteria, confirming the promising future in the treatment of chronic osteomyelitis.
Data from: Analysing small insect glands with UV-LDI MS: high-resolution spatial analysis reveals the chemical composition and use of the osmeterium secretion in Themira superba (Sepsidae: Diptera)
For many insect species, pheromones are important communication tools, but chemical analysis and experimental study can be technically challenging because they require the detection and handling of complex chemicals in small quantities. One drawback of traditional mass spectrometry methods such as gas chromatography mass spectrometry is that whole-body extractions from one to several hundred individuals are required, with the consequence that intra- and interindividual differences cannot be detected. Here, we used the recently introduced UV-LDI MS (ultraviolet laser desorption/ionization mass spectrometry) to profile the 'osmeterium' of the sepsid fly Themira superba that is located on the edge of the hind tibia of males. Based on analyses of individual legs, we established that the gland produced a secretion that consisted of oxygenated hydrocarbons and putative isoprenoids. The secretion was first detected 24 h after eclosion, and its transfer to the wings of females during mating was demonstrated using UV-LDI MS. We then tested whether the secretion had an anti-aphrodisiac function, but experimental transfer of the secretion to virgin females did not affect mating success or copulation duration. Throughout the study, UV-LDI MS proved invaluable, because it allowed tracking the natural and experimental transfer of small quantities of pheromones to specific body parts of small flies.
Data from: Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions
Plants are the primary producers of the terrestrial ecosystems that dominate much of the natural environment. Occurring approximately 480 MYA (Sanderson 2003; Kenrick et. al. 2012), the evolutionary transition of plants from an aquatic to a terrestrial environment was accompanied by several major developmental innovations. The freshwater charophyte ancestors of land plants have a haplobiontic life cycle with a single haploid multicellular stage, whereas land plants, which include the bryophytes (liverworts, hornworts, and mosses) and tracheophytes (also called vascular plants, namely, lycopods, ferns, and seed plants), exhibit a marked alternation of generations with a diplobiontic life-cycle with both haploid and diploid multicellular stages and where the embryo remains attached to, and is nourished by, the gametophyte (Haig 2008). The interjection of a multicellular diploid phase into the land plant life cycle was an important adaptation that enabled long-distance dispersal via mitotic spores where water-borne male gametes have restricted motility in dry terrestrial environments. Despite the similarity among land-plant life-cycles, they differ in one significant aspect: in the three bryophyte groups, the haploid gametophytic stage is the dominant vegetative stage, whereas in vascular plants the diploid sporophyte dominates. A common assumption, and one implied by the tradition of referring to bryophytes as "lower plants" - in contrast to the "higher plants", the tracheophytes - is that the bryophytes and their life-cycle are primitive (Kato and Akiyama 2005). However, without a strong phylogenetic hypothesis of land-plant relationships, it is not clear which (if either) of the gametophyte or sporophyte was the dominant ancestral vegetative state present in the earliest land plants (Renzaglia et al. 2007; Qiu et al. 2012). Early land plants have a relatively poor fossil record with few intermediate forms (Kenrick and Crane 1997; Wellman et al. 2003; Clarke et al. 2011), so most of the evidence for early land plant evolution has been based upon the patterns of morphological change that are implied by phylogenetic trees of relationships among extant land plant and algal groups. In this context, several recent studies based on large molecular data sets have converged upon a phylogenetic solution to land plant origins wherein tracheophytes are derived from bryophyte ancestors (Karol et al. 2001; Qiu et al. 2006; Gao et al. 2010; Karol et al. 2010; Chang and Graham 2011). In this hypothesis, the three bryophyte groups, namely liverworts, mosses, and hornworts, diverged sequentially and form a paraphyletic group with the hornworts sister to the tracheophytes. This phylogeny supports an intuitively elegant evolutionary trajectory whereby plants increased in morphological complexity from single-celled algae to seed plants via bryophyte intermediates (Karol et al. 2001; McCourt et al. 2004). Specifically, it implies that the gametophyte-dominant bryophyte life-cycle was ancestral among land plants and that the complex modular growth form of the vascular plant sporophyte evolved from the simplistic bryophyte sporophyte that consists only of a single growth module (Kato and Akiyama 2005; Barthélémy and Caraglio 2007).
Data from: Sexual conflict and ecology: species composition and male density interact to reduce male mating harassment and increase female survival
Sexual conflict is a pervasive evolutionary force that can reduce female fitness. Experimental evolution studies in the laboratory might overestimate the importance of sexual conflict since the ecological conditions in such settings typically include only a single species. Here, we experimentally manipulated conspecific male density (high or low) and species composition (sympatric or allopatric) to investigate how ecological conditions affect female survival in a sexually dimorphic insect, the banded demoiselle (Calopteryx splendens). Female survival was strongly influenced by an interaction between male density and species composition. Specifically, at low conspecific male density, female survival increased in the presence of heterospecific males (C. virgo). Behavioural mating experiments showed that interspecific interference competition reduced conspecific male mating success with large females. These findings suggest that reproductive interference competition between con- and heterospecific males might indirectly facilitate female survival by reducing mating harassment from conspecific males. Hence, interspecific competitors can show contrasting effects on the two sexes thereby influencing sexual conflict dynamics. Our results call for incorporation of more ecological realism in sexual conflict research, particularly how local community context and reproductive interference competition between heterospecific males can affect female fitness.
Data from: Urine is an important nitrogen source for plants irrespective of vegetation composition in an Arctic tundra: insights from a 15N-enriched urea tracer experiment
1. Mammalian herbivores can strongly influence nitrogen (N) cycling and herbivore urine could be a central component of the N cycle in grazed ecosystems. Despite its potential role for ecosystem productivity and functioning, the fate of N derived from urine has rarely been investigated in grazed ecosystems. 2. This study explored the fate of <sup>15</sup>N-enriched urea in tundra sites that have been either lightly or intensively grazed by reindeer for more than 50 years. We followed the fate of the <sup>15</sup>N applied to the plant canopy, at 2 weeks and 1 year after tracer addition, in the different ecosystem N pools. 3. <sup>15</sup>N-urea was rapidly incorporated in cryptogams and in aboveground parts of vascular plants, while the soil microbial pool and plant roots sequestered only a marginal proportion. Further, the litter layer constituted a large sink for the <sup>15</sup>N-urea, at least in the short term, indicating a high biological activity in the litter layer and high immobilization in the first phases of organic matter decomposition. 4. Mosses and lichens still constituted the largest sink for the <sup>15</sup>N-urea 1 year after tracer addition at both levels of grazing intensity demonstrating their large ability to capture and retain N from urine. Despite large fundamental differences in their traits, deciduous and evergreen shrubs were just as efficient as graminoids in taking up the <sup>15</sup>N-urea. The total recovery of <sup>15</sup>N-urea was lower in the intensively grazed sites, suggesting that reindeer reduce ecosystem N retention. 5. <i>Synthesis</i> The rapid incorporation of the applied <sup>15</sup>N-urea indicates that arctic plants can take advantage of a pulse of incoming N from urine. In addition, δ <sup>15</sup>N values of all taxa in the heavily grazed sites converged towards the δ <sup>15</sup>N values for urine, bringing further evidence that urine is an important N source for plants in grazed tundra ecosystems.
Data from: When homoplasy is not homoplasy: dissecting trait evolution by contrasting composite and reductive coding
The conceptualization and coding of characters is a difficult issue in phylogenetic systematics, no matter which inference method is used when reconstructing phylogenetic trees or if the characters are just mapped onto a specific tree. Complex characters are groups of features that can be divided into simpler hierarchical characters (reductive coding), although the implied hierarchical relational information may change depending on the type of coding (composite vs reductive). Up to now, there is no common agreement to either code characters as complex or simple. Phylogeneticists have discussed which coding method is best, but have not incorporated the heuristic process of reciprocal illumination to evaluate the coding. Composite coding allows to test 1) if several characters were linked resulting in a structure described as a complex character or trait, or 2) if independently evolving characters resulted in the configuration incorrectly interpreted as a complex character. We propose that complex characters or character states should be decomposed iteratively into simpler characters when the original homology hypothesis is not corroborated by a phylogenetic analysis, and the character or character state is retrieved as homoplastic. We tested this approach using the case of fruit types within subfamily Cinchonoideae (Rubiaceae). The iterative reductive coding of characters associated to drupes allowed us to unthread fruit evolution within Cinchonoideae. Our results show that drupes and berries are not homologous. As a consequence, a more precise ontology for the Cinchonoideae drupes is required.
Data from: Gene expression levels are correlated with synonymous codon usage, amino acid composition and gene architecture in the red flour beetle, Tribolium castaneum
Gene expression levels correlate with multiple aspects of gene sequence and gene structure in phylogenetically diverse taxa suggesting an important role of gene expression levels in the evolution of protein-coding genes. Here we present results of a genome-wide study of the influence of gene expression on synonymous codon usage, amino acid composition and gene structure in the red flour beetle, Tribolium castaneum. Consistent with the action of translational selection, we find that synonymous codon usage bias increases with gene expression. However, the correspondence between tRNA gene copy number and optimal codons is weak. At the amino acid level, translational selection is suggested by the positive correlation between tRNA gene numbers and amino acid usage which is stronger for highly expressed genes. In addition, there is a clear trend for increased use of metabolically cheaper, less complex, amino acids as gene expression increases. tRNA gene numbers also correlate negatively with amino acid size/complexity score indicating the coupling between translational selection and selection to minimize the use of large/complex amino acids. Interestingly, the correlation between tRNA gene numbers and amino acid size/complexity score appears to be widespread given our analyses of 10 additional genomes and might be explained by selection against negative consequences of protein misfolding. At the level of gene structure, three major trends are detected 1) CDS length increases across low and intermediate expression levels but decreases in highly expressed genes; 2) the average intron size shows the opposite trend, first decreasing with expression, followed by a slight increase in highly expressed genes and 3) intron density remains nearly constant across all expression levels. These changes in gene architecture are only in partial agreement with selection favoring reduced cost of biosynthesis.
Data from: Effects of gestational maternal undernutrition on growth, carcass composition and meat quality of rabbit offspring
An experiment was conducted in order to evaluate the effects of gestational undernutrition of rabbit does on growth, carcass composition and meat quality of the offsprings. Thirty primiparous non lactating rabbit does were artificially inseminated and randomly divided in three treatment groups: Control (C; fed to 100% of maintenance requirements throughout gestation, n = 10), early undernourished (EU; fed to 50% of maintenance requirements during days 7–19 of gestation, n = 10) and late undernourished (LU; fed to 50% of maintenance requirements during days 20-27 of gestation, n = 10). During the 4th week of the gestation period, LU does significantly lost weight compared to C and EU groups (P<0.05). At kindling, C does produced litters with higher proportions of stillborn kits (P<0.05) while the total litter size (alive and stillborn kits) was not different among groups (10.7, 12.8 and 12.7 kits in C, EU and LU groups, respectively). Kit birth weight tended to be lower in the LU group. During fattening, body weight and feed intake were not different among offsprings of the three experimental groups. Moreover, the maternal undernutrition did not have any impact on carcass composition of the offsprings in terms of carcass parts and internal organs weights as well as meat quality of L. lumborum muscle (pH24, colour, water holding capacity and shear values) at slaughter (70 days of age). Therefore, it can be concluded that the gestational undernutrition of the mother does not have detrimental effects on the productive and quality traits of the offsprings.
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