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R_Rajsp_OTU_Table_Investigationg_Soil_Mycobiome_of_American_Ginseng
<p>OTU Table for MSc Thesis at Western University.</p>
Supplementary material 1 from: Staynova R, Yanachkova V (2023) Weight management strategies and food supplement intake among Bulgarian adults: results of a national survey. Pharmacia 70(4): 1119-1126. https://doi.org/10.3897/pharmacia.70.e109835
Questionnaire
Supplementary material 1 from: Solé R, Gripenberg S, Lewis OT, Markesteijn L, Barrios H, Ratz T, Ctvrtecka R, Butterill PT, Segar ST, Metz MA, Dahl C, Rivera M, Viquez K, Ferguson W, Guevara M, Basset Y (2019) The role of herbivorous insects and pathogens in the regeneration dynamics of Guazuma ulmifolia in Panama. Nature Conservation 32: 81-101. https://doi.org/10.3897/natureconservation.32.30108
Supplementary tables S1-S4, Appendix S1, Plate S1
Supplementary material 1 from: Roma-Marzio F, Maccioni S, Dolci D, Astuti G, Magrini N, Pierotti F, Vangelisti R, Amadei L, Peruzzi L (2023) Digitization of the historical Herbarium of Michele Guadagno at Pisa (PI-GUAD). PhytoKeys 234: 107-125. https://doi.org/10.3897/phytokeys.234.109464
Supplementary data
Supplementary material 1 from: Cerrato C, Rocchia E, Brunetti M, Bionda R, Bassano B, Provenzale A, Bonelli S, Viterbi R (2019) Butterfly distribution along altitudinal gradients: temporal changes over a short time period. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 91-118. https://doi.org/10.3897/natureconservation.34.30728
Supplementary data
Supplementary material 1 from: Zhang S-N, Hyde KD, Jones EBG, Jeewon R, Cheewangkoon R, Liu J-K (2019) Striatiguttulaceae, a new pleosporalean family to accommodate Longicorpus and Striatiguttula gen. nov. from palms. MycoKeys 49: 99-129. https://doi.org/10.3897/mycokeys.49.30886
Phylogenetic analysis
Supplementary material 1 from: Saravanakumar D, Bartholomew ES, Seepersad G, Gore-Francis J, Goldsmith J, Ramnanan N, Chang PG, Bridgemohan P, Sewsaran R, Medrano-Cabral S, Morrison StS (2023) Prioritisation of quarantine pest list for the Caribbean using a multi-criteria decision approach. NeoBiota 88: 1-16. https://doi.org/10.3897/neobiota.88.102673
AHP model developed for priotization of quarantine plant pests in the Caribbeean
Supplementary material 1 from: Li S, Peng C, Yuan R, Tian C (2023) Morphological and phylogenetic analyses reveal three new species of Apiospora in China. MycoKeys 99: 297-317. https://doi.org/10.3897/mycokeys.99.108384
Isolates and GenBank accession numbers used in the phylogenetic analyses
Supplementary material 1 from: Guerrero-Jiménez G, Vannucchi PE, Silva-Briano M, Adabache-Ortiz A, Rico-Martínez R, Roberts D, Neilson R, Elías-Gutiérrez M (2019) Brachionus paranguensis sp. nov. (Rotifera, Monogononta), a member of the L group of the Brachionus plicatilis complex. ZooKeys 880: 1-23. https://doi.org/10.3897/zookeys.880.28992
Figures S1–S2
Supplementary material 1 from: Mehrotra R, Caballer Gutierrez M, Scott CM, Arnold S, Monchanin C, Chavanich S (2020) On the Plakobranchidae (Gastropoda, Sacoglossa) from soft sediment habitats of Koh Tao, Gulf of Thailand, with descriptions of two new species. ZooKeys 969: 85-121. https://doi.org/10.3897/zookeys.969.52941
PlakobranchusCOI topology difference
Figure 2 from: Francisco-Gutiérrez A, Cházaro-Basáñez M, Carral-Domínguez R (2023) The first epiphytic species of Valeriana in the world: Valeriana rudychazaroi (Caprifoliaceae). PhytoKeys 236: 145-156. https://doi.org/10.3897/phytokeys.236.110905
Figure 2 Valeriana rudychazaroi on Quercus glabrescens trees in the field. Photograph taken by Rodrigo Carral-Domínguez.
Figure 3 from: Francisco-Gutiérrez A, Cházaro-Basáñez M, Carral-Domínguez R (2023) The first epiphytic species of Valeriana in the world: Valeriana rudychazaroi (Caprifoliaceae). PhytoKeys 236: 145-156. https://doi.org/10.3897/phytokeys.236.110905
Figure 3 Valeriana rudychazaroi in the field. A habitat at an altitude of 3–6 m on Quercus glabrescens trees B detail of inflorescence with flowers and fruit C hosts in cloud forests from central Veracruz, Mexico. Photographs taken by Rodrigo Carral-Domínguez.
Figure 2 from: Voynikov Y, Gevrenova R, Zheleva-Dimitrova D, Balabanova V, Nikolova I, Marinov L, Benbassat I, Momekov G (2023) UHPLC-Orbitrap screening of oleraindoles in hydromethanolic extracts of Portulaca oleracea. Pharmacia 70(4): 1521-1527. https://doi.org/10.3897/pharmacia.70.e113577
Figure 2 MS2 spectra and fragmentation analysis of the three basic HCA-I conjugates in negative ionization mode. The characteristic difference of 149.048 Da, indicating a neutral loss of the 5,6-dihydroxyindole is indicated. The fragment ion corresponding to 5,6-dihydroxyindole is 148.04 m/z.
Figure 1 from: Francisco-Gutiérrez A, Cházaro-Basáñez M, Carral-Domínguez R (2023) The first epiphytic species of Valeriana in the world: Valeriana rudychazaroi (Caprifoliaceae). PhytoKeys 236: 145-156. https://doi.org/10.3897/phytokeys.236.110905
Figure 1 Valeriana rudychazaroi Cházaro, Franc.Gut. & J.R.Carral. A habit of flowering branch B staminate flower C fruit. Drawn from the holotype Carral-Domínguez & Cházaro-Basáñez 766 (XAL). Illustration by Gerardo Andrade–Quintos.
Figure 3 from: Voynikov Y, Gevrenova R, Zheleva-Dimitrova D, Balabanova V, Nikolova I, Marinov L, Benbassat I, Momekov G (2023) UHPLC-Orbitrap screening of oleraindoles in hydromethanolic extracts of Portulaca oleracea. Pharmacia 70(4): 1521-1527. https://doi.org/10.3897/pharmacia.70.e113577
Figure 3 Proposed fragmentation behavior and diagnostic fragment ions of the basic components of oleraindoles: 5,6-dihydroxyindole, and coumaroyl, caffeoyl, and feruloyl moieties. (A): negative ionization mode; (B): positive ionization mode.
Figure 5 from: Francisco-Gutiérrez A, Cházaro-Basáñez M, Carral-Domínguez R (2023) The first epiphytic species of Valeriana in the world: Valeriana rudychazaroi (Caprifoliaceae). PhytoKeys 236: 145-156. https://doi.org/10.3897/phytokeys.236.110905
Figure 5 Author and eponymy of the new species A Miguel Cházaro showing a specimen of Valeriana rudychazaroi next to its host, a Quercus glabrescens tree in Tlacolulan, Veracruz, Mexico (Author: Rodrigo Carral-Domínguez) B Rudy Miguel Cházaro-Hernández, son of Miguel Cházaro, during a botanical expedition at Barranca de Ramírez, 1981 C Miguel Cházaro and his son, to whom he dedicates the name of this new species (Author of B and C: Patricia Hernández-Romero).
Figure 1 from: Voynikov Y, Gevrenova R, Zheleva-Dimitrova D, Balabanova V, Nikolova I, Marinov L, Benbassat I, Momekov G (2023) UHPLC-Orbitrap screening of oleraindoles in hydromethanolic extracts of Portulaca oleracea. Pharmacia 70(4): 1521-1527. https://doi.org/10.3897/pharmacia.70.e113577
Figure 1 Workflow chart of the study. The hydromethanolic extract of purslane was subjected to UHPLC-HRMS with subsequent MS2 analysis. After the raw data files were transformed with MSconvert, the data filtering (DIF and DDF) were performed either with MS2Analyzer, MZmine and the in-house R script. The scans that fell within 1.5% retention time threshold and 15 ppm m/z treshold were grouped, as belonging to the same substance. Then, the obtained list of possible oleraindole structures were manually inspected with the Xcalibur software.
Figure 8 from: Long Y, Teng C, Huang C, Zhang R, Deng W, Lin L (2023) Twenty-three new synonyms of the Eastern common groundhopper, Tetrix japonica (Bolívar, 1887) (Orthoptera, Tetrigidae). ZooKeys 1187: 135-167. https://doi.org/10.3897/zookeys.1187.110067
Figure 8 Tetrix japonica (Bolívar, 1887) A–C holotype of Tetrix cliva Zheng & Deng, 2004, syn. nov. A dorsal view B lateral view C labels D–F holotype of Tetrix duolunensis Zheng, 1996, syn. nov. D dorsal view E lateral view F labels.
Figure 15 from: Long Y, Teng C, Huang C, Zhang R, Deng W, Lin L (2023) Twenty-three new synonyms of the Eastern common groundhopper, Tetrix japonica (Bolívar, 1887) (Orthoptera, Tetrigidae). ZooKeys 1187: 135-167. https://doi.org/10.3897/zookeys.1187.110067
Figure 15 Tetrix japonica (Bolívar, 1887). Holotype of Tetrix zhoushanensis, Gao, Liu & Yin, 2022, syn. nov. A dorsal view B lateral view (photo Gao et al.).
Figure 3 from: Long Y, Teng C, Huang C, Zhang R, Deng W, Lin L (2023) Twenty-three new synonyms of the Eastern common groundhopper, Tetrix japonica (Bolívar, 1887) (Orthoptera, Tetrigidae). ZooKeys 1187: 135-167. https://doi.org/10.3897/zookeys.1187.110067
Figure 3 Tetrix japonica (Bolívar, 1887) A–C holotype of Coptotettix circinihumerus Zheng & Deng, 2004, syn. nov. A dorsal view B lateral view C labels D–F holotype of Coptotettix emeiensis Zheng, Lin & Zhang, 2012, syn. nov. D dorsal view E lateral view F labels.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.