Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
122
datasets available to search
ShareScore release 0.9.0
Dataset results
122 results for “3d genome organization”
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms[CUT&RUN]
GEO Series GSE236964. Drosophila melanogaster. 51 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization
GEO Series GSE220647. Saccharomyces cerevisiae. 99 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Regulation of 3D genome organization, transcription and histone H3K9me2 by histone H3K9 methyltransferases [HiC]
GEO Series GSE169103. Mus musculus. 8 samples. Type: Other.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [HICHIP_seq]
GEO Series GSE244950. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Deciphering the role of 3D genome organization in breast cancer susceptibility (Hi-C)
GEO Series GSE184280. Rattus norvegicus. 6 samples. Type: Other.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [ChIP-seq]
GEO Series GSE155149. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes
GEO Series GSE244952. Mus musculus. 25 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [RNA-Seq]
GEO Series GSE143718. Oryza sativa. 16 samples. Type: Expression profiling by high throughput sequencing.
STAG2 mutations and 3D genome organization, chromatin loops, and polycomb signaling in glioblastoma multiforme
GEO Series GSE240343. Homo sapiens. 20 samples. Type: Other; Expression profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons [RNA-Seq]
GEO Series GSE244285. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells
GEO Series GSE227750. Mus musculus. 150 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [ChIP-Seq, RNA-seq, Med-Seq]
GEO Series GSE154008. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Anti-cancer drugs curaxins target the 3D genome organization [ChIP-seq]
GEO Series GSE122462. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Elementary 3D organization of active and silenced E. coli genome (RNA-Seq)
GEO Series GSE283264. Escherichia coli. 25 samples. Type: Expression profiling by high throughput sequencing.
Changes in 3D genome organization of hepatocellular carcinoma (HCC) cells induced by lipid overload
GEO Series GSE273061. Homo sapiens. 2 samples. Type: Other.
3D structures of individual mammalian genomes reveal principles of nuclear organization
GEO Series GSE80280. Mus musculus. 42 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Deterioration of multi-level 3D genome organization during breast cancer progression
GEO Series GSE246599. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [RNASeq_T8]
GEO Series GSE227749. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Deterioration of multi-level 3D genome organization during breast cancer progression
GEO Series GSE246947. Homo sapiens. 6 samples. Type: Other.
A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells
GEO Series GSE154353. Mus musculus; Homo sapiens. 3 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.