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1,315 results for “Aberrations”
Fig. 1 in An aberrant amphicyonid mammal from the latest Eocene of the Bose Basin, Guangxi, China
Fig. 1. Map showing position of Bose Basin, Guangxi Province, southern China, and simplified outcrop map of Bose Basin, illustrating position of type locality IVPP 73083 (after Tang et al. 1974).
Fig. 4 in An aberrant amphicyonid mammal from the latest Eocene of the Bose Basin, Guangxi, China
Fig. 4. Guangxicyon sinoamericanus gen. et sp. nov., IVPP V11818−1, line drawings of the left lower jaw with p3–m1 and alveoli for p1–2 and m2–3; in occlusal (A) and lateral (B) views. Scale bar 2 cm.
Fig. 7 in An aberrant amphicyonid mammal from the latest Eocene of the Bose Basin, Guangxi, China
Fig. 7. Guangxicyon sinoamericanus gen et sp. nov, IVPP V11818−3, right tibia, photographs in anterior (A) and lateral (B) views. Scale bar 2 cm.
Fig. 3 in An aberrant amphicyonid mammal from the latest Eocene of the Bose Basin, Guangxi, China
Fig. 3. Guangxicyon sinoamericanus gen. et sp. nov., IVPP V11818−1, photographs of the left lower jaw with p3–m1 and alveoli for p1–2 and m2–3; in occlusal (A), lateral (B), and medial (C) views. Scale bar 2 cm.
Nanopore deep sequencing as a tool to characterize and quantify aberrant splicing caused by variants in inherited retinal dystrophy genes
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Aberrant gene expression prediction benchmark based on GTEx v8
<p>This repository contains the aberrant gene expression prediction benchmark data as well as the necessary expected gene expression across tissues and tissue-specific isoform contribution scores for AbExp prediction.<br> </p> <p>The aberrant gene expression prediction benchmark data (aberrant_expression_prediction_benchmark.parquet) contains the following columns:</p> <ul> <li>individual: GTEx individual</li> <li>gene: Ensembl gene identifier</li> <li>tissue: GTEx tissue</li> <li>tissue_type: GTEx tissue type</li> <li>mu: OUTRIDER-estimated expected gene expression</li> <li>theta: OUTRIDER-estimated gene dispersion</li> <li>counts: Raw gene expression count</li> <li>normalized_counts: OUTRIDER-normalized gene expression count</li> <li>l2fc: log2 fold change between observed and expected gene expression count</li> <li>zscore: z-score of gene expression, obtained by quantile-mapping the OUTRIDER-estimated distribution to the standard normal distribution</li> <li>nominal_pvalue: OUTRIDER-estimated <em>p</em>-value of being an expression outlier</li> <li>FDR: FDR-adjusted <em>p</em>-value of being an expression outlier</li> <li>is_in_benchmark: Whether this observation is part of the aberrant gene expression prediction benchmark</li> <li>is_underexpressed_outlier: Whether this observation is an underexpression outlier at FDR < 5%. This is the benchmark prediction label.</li> </ul> <p><br>The isoform proportions table (gtex_v8_isoform_proportions.tsv) contains the following columns:</p> <ul> <li>gene: Ensembl gene identifier</li> <li>tissue_type: GTEx tissue type</li> <li>tissue: GTEx tissue</li> <li>transcript: Ensembl transcript identifier</li> <li>mean_transcript_proportions: mean transcript proportions across individuals in GTEx v8</li> <li>median_transcript_proportions: median transcript proportions across individuals in GTEx v8</li> <li>sd_transcript_proportions: standard deviation of transcript proportions across individuals in GTEx v8</li> </ul> <p><br>The expected gene expression table (gtex_v8_expected_expression.tsv) contains the following columns:</p> <ul> <li>gene: Ensembl gene identifier</li> <li>tissue_type: GTEx tissue type</li> <li>tissue: GTEx tissue</li> <li>gene_is_expressed: Whether the gene is expressed in the tissue</li> <li>median_expression: median OUTRIDER-estimated expected gene expression (mu) across individuals</li> <li>expression_dispersion: OUTRIDER-estimated gene dispersion (theta)</li> </ul>
Supporting data for RCANE: A Deep Learning Algorithm for Whole-genome Pan-Cancer Somatic Copy Number Aberration Prediction using RNA-seq Data.
<p>This is the data repository for <em>RCANE: A Deep Learning Algorithm for Whole-genome Pan-Cancer Somatic Copy Number Aberration Prediction using RNA-seq Data</em>. To use this dataset, please refer to <a href="https://github.com/HowardGech/RCANE" target="_blank" rel="noopener">https://github.com/HowardGech/RCANE</a>.</p>
Figs. 1-7 in A new aberrant species of the genus Pacrillum from Nepal (Hydrophilidae: Sphaeridiinae: Megasternini)
Figs. 1-7. Pacrillum cycrilloideum sp. nov. 1-2 – habitus of paratype. 1– dorsal view; 2 – lateral view (the arrow shows a fine line of elytral series). 3-5 – male genitalia of holotype. 3 – tegmen; 4 – median lobe; 5 – sternite 9. 6 – microsculpture of pronotal interstices. 7 – ventral surface of paratype (from above: median part of prosternum, preepisternal elevation of mesothorax, and metaventrite).
Fig. 2 in Scientific Note Ambicoloration and morphological aberration in the sole Achirus declivis (Pleuronectiformes: Achiridae) and two other cases of color abnormalities in achirid soles from southeastern Brazil
Fig. 2. Incomplete eye rotation and incomplete development of the dorsal fin over the skull in the plainfin sole Achirus declivis (UFES 0095; 94.9 mm SL) from the Piraquê-Açú River, Espírito Santo, southeast Brazil: (a) ocular side; (b) detail of blind side of the head; (c) ocular side of the head; (d) radiograph of the head. Photographs by Raphael M. Macieira.
Fig. 1 in Scientific Note Ambicoloration and morphological aberration in the sole Achirus declivis (Pleuronectiformes: Achiridae) and two other cases of color abnormalities in achirid soles from southeastern Brazil
Fig. 1. Abnormal pigmentation patterns in the plainfin sole Achirus declivis from the Piraquê-Açú River, Espírito Santo, southeast Brazil: (a) ocular side of ambicolored 108.8 mm SL specimen (ZUEC 6274); (b) blind side of the individual represented in a; (c) ocular side of hypomelanistic specimen 119.1 mm SL (ZUEC 6275); (d) blind side of the individual represented in c. Photographs by Raphael M. Macieira.
Dataset related to article: "Congenital insensitivity to pain a novel mutation affecting a U12-type intron causes multiple aberrant splicing of SCN9A"
<p>raw data related to article reported at title</p>
Dataset of "Near-real-time diagnosis of electron optical phase aberrations in scanning transmission electron microscopy using an artificial neural network"
<p>Dataset containing the jupyter notebook used to construct the database of image, to model and train ANN and to analyze the experimental data. Furthermore there are also a reduced database of 100 images that can be utilized to test the ANN, the h5 file containing the ANN weigths and other supporting files.</p>
Immuno-proteomic profiling reveals aberrant immune cell regulation in the airways of individuals with ongoing post-COVID-19 respiratory disease
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Chromosomal aberrations and early mortality in a non-mammalian vertebrate: example from pressure-induced triploid Atlantic salmon
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Aberrant basal cell clonal dynamics shape early lung carcinogenesis
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Data From: Contrasting physiological traits of shade tolerance in Pinus and Podocarpaceae native to a tropical Vietnamese forest: Insight from an aberrant flat-leaved pine
<p>The absence of pines from tropical forests is a puzzling biogeographical oddity potentially explained by traits of shade intolerance. <i>Pinus krempfii</i>, a flat-leaved pine endemic to the Central Highlands of Vietnam, provides a notable exception as it seems to successfully compete with shade-tolerant tropical species. Here, we test the hypothesis that successful conifer performance at the juvenile stage depends on physiological traits of shade tolerance by comparing the physiological characteristics of <i>P. krempfii </i>to coexisting species from the genus <i>Pinus</i> and from the Podocarpaceae, a relatively abundant and shade tolerant conifer family found in pantropical forests. We examined leaf photosynthetic, respiratory and biochemical traits. Additionally, we compiled attainable maximum photosynthesis, maximum RuBP carboxylation (<i>Vc</i><sub>max</sub>) and maximum electron transport (<i>J</i><sub>max</sub>) values for <i>Pinus</i> and Podocarpaceae species from the literature. In our literature compilation, <i>P. krempfii </i>was intermediate between <i>Pinus</i> and Podocarpaceae in its maximum photosynthesis and its <i>Vc</i><sub>max</sub>. <i>Pinus</i> exhibited a higher <i>Vc</i><sub>max</sub> than Podocarpaceae, resulting in a less steep slope in the linear relationship between <i>J</i><sub>max</sub> and <i>Vc</i><sub>max</sub>. These results suggest that <i>Pinus </i>may be more shade intolerant than Podocarpaceae with <i>P. krempfii </i>falling between the two groups. However, in contrast, Vietnamese conifers' leaf mass per areas and biochemical traits did not highlight the same intermediate nature of <i>P. krempfii</i>. Furthermore, regardless of leaf shape or family assignation, all species demonstrated a common carbon gain efficiency. Overall, our findings highlight the importance of shade tolerance for conifer survival in tropical forests. However, they also demonstrate a diversity of shade tolerance strategies, all of which lead to the persistence of Vietnamese juvenile conifers in low-light tropical understories.</p>
Dataset: Aberration characterisation of X-ray optics using multi-modal ptychography and a partially coherent source
<p>These are the ptychography datasets used for the publication "Aberration characterisation of X-ray optics using multi-modal ptychography and a partially coherent source". File are in the HDF format and contain a number of datasets detailed below.</p> <p>If you require more information, please contact the corresponding author of the publication, at thomas.moxham@eng.ox.ac.uk</p> <p>Raw files contain: diffraction intensities, scanning positions in millimeters</p> <p>Recon files contain: fourier error, complex probe function, complex object function, recon pixel size, energy</p> <p>raw_siemens_star_be_lens.hdf, raw_fourier_ring_correlation.hdf, merlin_medipix_detector_mask.hdf, recon_multi-modal_probe.hdf, recon_multi-modal_object.hdf, recon_fourier_ring_correlation.hdf</p>
X-ray beam characterization of an aberration-corrected pair of multilayer Laue lenses with ptychography
<p>This data set is split over three zip archives. Each archive contains a scanning coherent X-ray diffraction (ptychography) data set recorded at an X-ray energy of 16.2 keV. A crossed pair of multilayer Laue lenses (MLL) is used to focus the beam and scan a Siemens star test sample. Each data set includes a configuration file and scan position file. In addition, the final result of the obtained ptychographic reconstruction is included.</p><p><strong>Description of the three data sets:</strong></p><ul><li>scan_00086: X-ray beam characterization of the MLL. On this data set the design of the refractive phase corrector was based upon.</li><li>scan_00338: X-ray beam characterization of the MLL four days after scan_00086 without phase corrector.</li><li>scan_00346: X-ray beam characterization of the MLL with refractive phase corrector.</li></ul><p><strong>Additional information:</strong></p><p>The diffraction patterns can be found in the 'eiger4m_01' folder. They are split up over multiple h5 files and located in the group '/entry/data/data'. The assignment of diffraction patterns to scan positions can be found in the positions.txt file. All relevant input parameters for ptychography are located in the 'input' group in the ptycho.conf files. The reconstruction results are in the European Data Format (EDF).</p><p><strong>The data set has been published in:</strong></p><p>F. Seiboth, A. Kubec, A. Schropp, S. Niese, P. Gawlitza, J. Garrevoet, V. Galbierz, S. Achilles, S. Patjens, M. E. Stuckelberger, C. David, and C. G. Schroer, "Rapid aberration correction for diffractive X-ray optics by additive manufacturing," Optics Express 30(18), 31519 (2022).</p>
Dataset for Aberration-Corrected STEM to Determine the Surface Coverage and Distribution of Immobilized Molecular Complexes
<p>Raw image data used for the paper "Aberration-Corrected STEM to Determine the Surface Coverage and Distribution of Immobilized Molecular Complexes".</p>
Raw data for Hancock-Cerutti et. al. "ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling"
<p>Blot images and tabular data for Hancock-Cerutti et. al. "ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling"</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.