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Dataset results
83 results for “Aegilops”
Aegilops geniculata Roth (BR0000012212484)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000005020959)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000011441380)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000011439851)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000011439431)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000011441502)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Aegilops cylindrica Host (BR0000012288991)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Genomic characterization and gene bank curation of Aegilops using genotyping-by-sequencing
<p>In this study, genotyping-by-sequencing (GBS) was performed on 1041 <em>Aegilops</em> accessions, representing 23 different species. These accessions have been maintained by the Wheat Genetics and Resource Center (WGRC) at Kansas State University. The GBS FASTQ files have been uploaded to the NCBI SRA public repository under the BioProject accession number # PRJNA985892. We have provided other files related to data analysis, such as the barcode key file, SNP matrices, and taxonomic information of the accessions in this Dryad repository, which can be accessed through the provided link. The aim of the study was to explore the genetic and genomic characteristics of wild wheat relatives, <em>Aegilops,</em> using a larger number of SNP markers. Here, we also curated the WGRC gene bank <em>Aegilops</em> collection via the identification of misclassified accessions and genetically identical redundant accessions. Further, we explored the genomic relationship between wheat and the different <em>Aegilops</em> species. </p>
Genomic characterization and gene bank curation of Aegilops using genotyping-by-sequencing
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k-mer matrix Aegilops tauschii diversity panel (Open wild wheat consortium phase II) Part 1/3
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Population genomics of the wild wheat Aegilops tauschii (Open wild wheat consortium phase II)
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k-mer matrix Aegilops tauschii diversity panel (Open wild wheat consortium phase) Part 3/3
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k-mer matrix Aegilops tauschii diversity panel (Open wild wheat consortium phase II) Part 2/3
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Aegilops ventricosa 2NS segment and its impact on wheat yield
<p>Yield data for Kansas State University wheat breeding lines (>3000) were collected over the course of more than two decades (1996-2017). Yield data for USDA-Regional Performance Nursery lines (>800) were collected from 1992 to 2015. The lines were genotyped using genotyping by sequencing (GBS). A custom pipeline to predict the presence of alien 2NS segment was carried out for these lines based on GBS data and reference wheat and alien (Aegilops ventricosa) genomes. Please reference Walkowiak S., Gao L., et al. 2020 Nature article (https://doi.org/10.1038/s41586-020-2961-x), and Gao et al 2020 Theoretical and Applied Genetics article (10.1007/s00122-020-03712-y) for more details. </p> <p> </p>
Compatible interaction experiment with Aegilops cylindrica infected with Zymoseptoria tritici isolate Zt 469 - CSLM images and videos
<p>Microscopic images and videos from convocal laser scanning microscopy (CLSM) analysis using maximum projections of confocal z-stacks. Cell nuclei and plant tissue are visible in purple, fungal hyphae in green.</p>
De novo transcriptome assembly Aegilops cylindrica
<p>De novo transcriptome assembly of Aegilops cylindrica was created using trinity v. 2.15.1. The assembly contains 285000 transcripts encoding for 174040 genes.</p>
Incompatible interaction experiment with Aegilops cylindrica infected with Zymoseptoria tritici isolate Zt 244 (IPO323) - CSLM images and videos
<p>Microscopic images and videos from convocal laser scannning microscopy (CLSM) analysis using maximum projections of confocal z-stacks. Cell nuclei and plant tissue are visible in purple, fungal hyphae in green.</p>
Chromosome-scale assembly of the wild wheat relative Aegilops umbellulata
<p><span>Wild wheat relatives have been explored in plant breeding to increase the genetic diversity of bread wheat, one of the most important food crops. <em>Aegilops umbellulata</em> is a diploid U genome-containing grass species that serves as a genetic reservoir for wheat improvement. In this study, we report the construction of a chromosome-scale reference assembly of <em>Ae. umbellulata</em> accession TA1851 based on corrected PacBio HiFi reads and chromosome conformation capture. The total assembly size was 4.25 Gb with a contig N50 of 17.7 Mb. In total, 36,268 gene models were predicted. We benchmarked the performance of hifiasm and LJA, two of the most widely used assemblers using standard and corrected HiFi reads, revealing a positive effect of corrected input reads. Comparative genome analysis confirmed substantial chromosome rearrangements in <em>Ae. umbellulata</em> compared to bread wheat. In summary, the <em>Ae. umbellulata</em> assembly provides a resource for comparative genomics in Triticeae and for the discovery of agriculturally important genes.</span></p>
Chromosome-scale assembly of the wild wheat relative Aegilops umbellulata
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Gene annotations and optical maps of the Aegilops tauschii acc. AL8/78 assembly Aet v6.0
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.