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42 results for “Alphaproteobacteria”
Fig. 2 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 2. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Sphingomonadales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 3. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales in the class Alphaproteobacteria. Bootstrap values greater than 70% are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Caulobacterales and Rhizobiales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Bar, 0.02 substitutions per nucleotide position. The strain Escherichia coli ATCC 11775T is used as an outgroup.
Fig. 4 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhodospirillales in the class Alphaproteobacteria. Bootstrap values>70% are shown in the neighbor-joining tree. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, EgM1111; 2, IMCC12376; 3, 63DPR2; 4, FW2; 5, WW59; 6, HME9618; 7, WS23; 8, 01SU6; 9, SDN0101; 10, WM24; 11, M41; 12, 01SU7P; 13, R111; 14, LR3; 15, MT2F 6; 16, W533; 17, 7C17; 18, KTCe5; 19, LB3; 20, PMXR; 21, WM92; 22, MW2F51; 23, 61DPR27; 24, M49; 25, HME9619; 26, BSW2; 27, IMCC12390; 28, SDM0103; 29, BS16; 30, LR4; 31, IMCC12425; 32, BM15; 33, EgM3207; 34, KHS03; 35, KHS07; 36, SDM0205; 37, HME9615; 38, IMCC12392; 39, WW106.
Alphaproteobacteria protein dataset
<p>This dataset contains faa and gff files originating from RefSeq Alphaproteobacteria complete sequence database available on 2020 Sept 5. Files ending with .phr, .pin, or .psq are blast database.</p>
Fig. 3. A in A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea
Fig. 3. A neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives in the orders Burkholderiales and Rhodocyclales of the class of Betaproteobacteria. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 1 in A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea
Fig. 1. Transmission electron micrographs or scanning electron micrographs showing the cell morphologies of the strains isolated in this study. The strains were cultured at their optimal growth conditions. Strains: 1, YSTF-M5; 2, BSSL-BR9; 3, HMF5336; 4, HMF6093; 5, HMF6710; 6, KYW1791; 7, KYW1736; 8, KYW1376; 9, KYW1819; 10, FS72; 11, CAU 1521; 12, CAU 1595; 13, CAU 1597; 14, G119; 15, G187; 16, R36; 17, BT55; 18, BT341; 19, BT373; 20, 19D1A35; 21, 19D1V26; 22, 19D2A5; 23, 19D1F4; 24, MMS19-R33; 25, MMS19-T29; 26, HMF4787; 27, HMF5328; 28, CAU 1556; 29, BT39; 30, BT69; 31, BT358; 32, BT359; 33, BT367; 34, BT372; 35, BG9.
149 family representatives (Alphaproteobacteria)
<p>Representatives of 149 families of Alphaproteobacteria from GTDB.</p>
Fig. 2 in A report on 24 unrecorded bacterial species of Korea isolated in 2016, belonging to the orders Rhizobiales and Sphingomonadales in the class Alphaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between the strains isolated in this study and their relatives in the Rhizobiales of the Alphaproteobacteria. Bootstrap values (expressed as percentages of 1000 replications) over 70% are shown at nodes for neighbour-joining, maximum parsimony, and maximum likelihood methods, respectively. Filled circles and open circles indicate that the corresponding nodes were recovered by all treeing methods and by two treeing methods, respectively. Bootstrap values (>70%) are shown at nodes. Bar, 0.02 substitutions per nucleotide position.
Fig. 4 in A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Caulobacterales in the class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.01 changes per nucleotide.
Fig. 5 in A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Sphingomonadales in the class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.01 changes per nucleotide.
Fig. 1 in A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, HME9313; 2, SC11; 3, HME9328; 4, SR5-12; 5, GDR2; 6, JJ9005; 7, W4-2-3; 8, W5-3- 2; 9, MS6Y-8-2; 10, CDM27; 11, IMCC19253; 12, JJ9007; 13, CDR12; 14, W2-3-3; 15, IMCC3052; 16, IMCC12052; 17, MMD3Y-10-1; 18, HME9315; 19, SR1-05; 20, BDM25; 21, 01SU1-P; 22, 2013N5; 23, JJ9004; 24, G8; 25, R8-4; 26, MBM3; 27, Gsoil033; 28, WS140; 29, IMCC1933; 30, KEM112; 31, SR1-03; 32, ST6-05; 33, 2013C32; 34, MK6Y-2-1; 35, MS6Y-8-4; 36, F4; 37, HME9308; 38, BS17; 39, JJ9002; 40, PMX-RY; 41,16-4-1; 42, 24-5.
Fig. 5 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strain LPB0172 isolated in this study and its relatives in the order Desulfovibrionales in the class Deltaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.05 changes per nucleotide.
Fig. 6 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 6. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strain LPB0305 isolated in this study and its relatives in the order Campylobacterales in the class Epsilonproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, HMF3828; 2, CL5; 3, V7; 4, IMCC25608; 5, NU4; 6, SIL02; 7, RDH1; 8, IMCC25609; 9, LPB0094; 10, IMCC25610; 11, JAF4; 12, HMF2668; 13, HMF3938; 14, KYW1034; 15, LPB0098; 16, C10-12; 17, C3-48; 18, E15; 19, TW2K3; 20, G11; 21, MW26; 22, IMCC25619; 23, IMCC25606; 24, LPB0124; 25, NR 4-05; 26, HMF4018; 27, JJ13; 28, IMCC25620; 29, BR5-29-1; 30, S6-5; 31, LPB0117.
Fig. 3 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhodobacterales and Sphingomonadales in the class Alphaproteobacteria. Bootstrap values are greater than 70% are shown the neighbor-joining tree method. Bar, 0.02 substitutions per nucleotide position. The strain Escherichia coli ATCC 11775T is used as an outgroup.
Fig. 1 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, CrO8; 2, KYW1510; 3, BT41; 4, BO184; 5, Wi-122; 6, Wi-69; 7, CAU 1493; 8, Hyper-3; 9, BT148; 10, HMF7144; 11, MMS18-CY061; 12, GA017; 13, Wi-125; 14, 18JY13-8; 15, Gri211; 16, CAU 1498; 17, KYW1484; 18, Wi-144; 19, dNF-2; 20, Ast32; 21, JBTF-M28; 22, CAU 1505; 23, BO-81; 24, CHM 34; 25, SGG 2; 26, SG3.K22; 27, YA.S; 28, KO.BC1; 29, CLH 2; 30, SG2.K2; 31, DW.G5; 32, CDK1.9; 33, YA.W2; 34, SG3.K31; 35, MGO 2; 36, SG.K 4; 37, HMF9221; 38, H-1; 39, HMF9223; 40, MMS18-GA122; 41, HMF9218; 42, LA-50.
Fig. 4 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 4. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhodobacterales, Caulobacterales and Rhodospirillales in the class Alphaproteobacteria. Bootstrap values>70% are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 2. A in A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea
Fig. 2. A neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives in the orders Caulobacterales, Rhizobiales, Rhodobacterales, Rhodospirillales, and Sphingomonadales of the class of Alphaproteobacteria. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
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