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Fig. 5 in Setaphyes elenae sp. nov., a new species of mud dragon (Kinorhyncha: Allomalorhagida) from Skagerrak (north-eastern Atlantic Ocean)
Fig. 5. Boxplots showing the ranges of different body measurements of Setaphyes elenae sp. nov., S. dentatus (Reinhard, 1881) and S. flaveolatus (Zelinka, 1928). A. Total trunk length. B. Standard sternal width. C. Lateral terminal spines' length.
Fig. 4 in Setaphyes elenae sp. nov., a new species of mud dragon (Kinorhyncha: Allomalorhagida) from Skagerrak (north-eastern Atlantic Ocean)
Fig. 4. Scanning electron micrographs showing general overview and details of the cuticular trunk morphology of a non-type specimen of Setaphyes elenae sp. nov. A. Dorsal overview. B. Middorsal elevation of segment 4. C. Cuticular ornamentation of anterior margin of segment 1. D. Detail of primary and secondary pectinate fringes of segment 5. E. Middorsal to paradorsal view of segment 2. F. Laterodorsal seta of segment 5. G. Middorsal process of segment 1. H. Ventral view of segments 4–5. I. Dorsal view of segment 10. J. Subdorsal sensory spots of segment 8. Abbreviations: mde = middorsal elevation; mdp = middorsal process; pdse = paradorsal seta; ppf = primary pectinate fringe; s = segment; vmse = ventromedial seta. Numbers after abbreviations indicate corresponding segment; sensory spots are marked as dashed circles. Scale bars: A = 100 µm; B, D, F–G, J = 1 µm; C, E, H–I = 10 µm.
Fig. 3 in Setaphyes elenae sp. nov., a new species of mud dragon (Kinorhyncha: Allomalorhagida) from Skagerrak (north-eastern Atlantic Ocean)
Fig. 3 (opposite page). Light micrographs showing trunk overviews and details of cuticular trunk characters of ♀, holotype (NHMD 655358) (A–L, N) and ♂, paratype (NHMD 655361) (M) of Setaphyes elenae sp. nov. A. Dorsal overview. B. Dorsal view on right half of segment 1. C. Ventral view on left half of segment 1. D. Dorsal view on right half of segment 2. E. Ventral view on left half of segment 2. F. Dorsal view on right half of segment 3. G. Ventral view on left half of segment 3. H. Ventral overview. I. Dorsal view on right half of segment 4. J. Ventral view on left half of segment 4. K. Dorsal view on right half of segment 8. L. Ventral view on left half of segment 8. M. Dorsal view on right half of segment 9. N. Ventral view on left half of segment 9. Abbreviations: ldse = laterodorsal seta; lts = lateral terminal spine; lvse = lateroventral seta; mde = middorsal elevation; mdp = middorsal process; pdse = paradorsal seta; vlse = ventrolateral seta; vmse = ventromedial seta. Numbers after abreviations indicate correspong segment; sensory spots are marked as dashed circles, and glandular cell outlets as continuous circles. Scale bars: A, H = 100 µm; B–G, I–N = 20 µm.
Fig. 2 in Setaphyes elenae sp. nov., a new species of mud dragon (Kinorhyncha: Allomalorhagida) from Skagerrak (north-eastern Atlantic Ocean)
Fig. 2 (opposite page). Line art illustrations of adult Setaphyes elenae sp. nov. A. ♀, ventral overview. B. ♀, dorsal overview. C. ♂, segments 10–11, ventral view. D. ♂, segments 1–2, ventral view. Abbreviations: bsj = ball-and-socket joint; dpl = dorsal placid; gcoI = type I glandular cell outlet; ldcr = laterodorsal cuticular ridge; ldse = laterodorsal seta; ldss = laterodorsal sensory spot; lts = lateral terminal spine; lvse = lateroventral seta; mde = middorsal elevation; mdp = middorsal process; ms = muscular scar; pdse = paradorsal seta; pdss = paradorsal sensory spot; ppf = primary pectinate fringe; ps = penil spine; pvap = paraventral apodeme; sdss = subdorsal sensory spot; spf = secondary pectinate fringe; vlcr = ventrolateral cuticular ridge; vlse = ventrolateral seta; vlss = ventrolateral sensory spot; vmse = ventromedial seta; vmss = ventromedial sensory spot; vmt = ventromedial tube; vpl = ventral placid. Scale bar = 100 µm
Fig. 3 in Review of Campsicnemus species from the Atlantic Ocean Islands (Diptera: Dolichopodidae)
Fig. 3. Campsicnemus flavissimus sp. nov., ♂ holotype and ♀ paratype. A. ♀ head. B. ♂ wing. C. ♂ mid tibia and tarsus. D. ♂ mid tibia, basal part. E. ♂ mid femur.
Fig. 1 in Review of Campsicnemus species from the Atlantic Ocean Islands (Diptera: Dolichopodidae)
Fig. 1. Campsicnemus meridionalis sp. nov., ♂ holotype. A. habitus. B. head. C. wing. D. mid femur. E. mid tibia and tarsus. F. hind femora.
Fig. 2 in Review of Campsicnemus species from the Atlantic Ocean Islands (Diptera: Dolichopodidae)
Fig. 2. Campsicnemus sanctaehelenae sp. nov., ♂ holotype. A. antenna. B. wing. C. mid femur. D. hind femur and tibia. E. mid tibia and tarsus.
Figure 3. Diplecogaster tonstricula n in Diplecogaster tonstricula, a new species of cleaning clingfish (Teleostei: Gobiesocidae) from the Canary Islands and Senegal, eastern Atlantic Ocean, with a review of the Diplecogaster-ctenocrypta species-group
Figure 3. Diplecogaster tonstricula n. sp., CCML uncat., paratype, specimen 1, 22.9 mm SL. Head lateral line system. (A) Dorsal view of head; (B) ventral view of head. Bar 1 mm.
Figure 1 in The hermit crab Sympagurus dimorphus (Anomura: Parapaguridae) at the edge of its range in the south-western Atlantic Ocean: population and morphometry features
Figure 1. Sympagurus dimorphus. Densities (number of individuals/100 m2) in the sampling areas from 2002 through 2006. Left column shows presence/absence data including all sampling sites, and right column shows densities on a relative scale.
North Atlantic Oscillation (NAO) climate index hidden in ocean generated secondary microseisms
<p>Datatsets associated with "North Atlantic Oscillation (NAO) climate index hidden in ocean generated secondary microseisms". The data include the daily seismic cross-correlograms for station pairs located on land and at the seafloor offshore Ireland, 3D models used for the numerical simulations and the associated synthetic seismic data.</p>
FIGURE 2. A. Alcyonium paessleri May, 1899 in New records of octocorals (Cnidaria, Anthozoa) from the south western Atlantic Ocean, with zoogeographic considerations
FIGURE 2. A. Alcyonium paessleri May, 1899, alcohol sample, MACN 18635. B. Alcyonium haddoni Wright & Studer, 1889, alcohol sample, MACN 15666.
FIGURE 2 in First occurrence of the genus Paraleucilla (Calcarea, Porifera) in the Atlantic Ocean: P. m a g n a sp. nov.
FIGURE 2. External morphology of Paraleucilla magna sp. nov. A — Sponge in situ; B — Preserved holotype; C — Detail of osculum and atrial cavity of holotype.
FIGURE 1 in First occurrence of the genus Paraleucilla (Calcarea, Porifera) in the Atlantic Ocean: P. m a g n a sp. nov.
FIGURE 1. Distribution of Paraleucilla magna sp. nov. 1 — Type locality, Praia Vermelha; 2 — Cagarras Archipelago; 3 — Arraial do Cabo (Rio de Janeiro State); 4 — Alcatrazes Archipelago (São Paulo State).
FIGURE 5 in A new species of whiptail stingray of the genus Dasyatis Rafinesque, 1810 from the Southwestern Atlantic Ocean (Chondrichthyes: Myliobatiformes: Dasyatidae)
FIGURE 5: Dasyatis colarensis n. sp., UERJ 2006, paratype. Detail of mouth showing the coloration of the lower lip margin.
FIGURE 3 Halosaurus ovenii from the northeastern Atlantic Ocean, MHNUSC 25010 - 2, 578 in Halosaur fishes (Notacanthiformes: Halosauridae) from Atlantic Spanish waters according to integrative taxonomy
FIGURE 3 Halosaurus ovenii from the northeastern Atlantic Ocean, MHNUSC 25010 - 2, 578 mm total length.
Sixty-one thousand Recent planktonic foraminifera from the Atlantic Ocean
<p>Here we provide an extensive image library of Recent microfossils (primarily planktonic foraminifera) from the Atlantic Ocean, with accompanying 2D and 3D coordinate data and morphometric measurements. This data was generated using high-throughput imaging methods (<em>AutoMorph</em>) developed in P.M. Hull's lab at Yale University.</p> <p>The dataset consists of microfossils from 34 sediment samples, mounted on 155- micropaleontological slides, primarily from the North Atlantic Ocean <strong>(metadata_tables.tar.gz</strong>: Table 1). All slides are accessioned to the Yale Peabody Museum of Natural History (YPM) Division of Invertebrate Paleontology with unique YPM catalog numbers (metadata_tables.tar.gz: Table 2). Slides of microfossils were imaged at multiple focal heights (z-planes) using a light microscope with an automated stage and processed with the image processing models of <em>AutoMorph</em> as detailed in Table 2. <em>AutoMorph</em> software and tutorials can be accessed here: https://github.com/HullLab. For an example of a raw slide scan see: Hsiang, Allison Y., Nealson, Kaylea, Elder, Leanne E., Liu, Yusu, & Hull, Pincelli M. (2016). Slide scan example for Automorph. Zenodo. http://doi.org/10.5281/zenodo.167557. </p> <p>124,230 unique objects (primarily microfossils) were identified from the 155 slides of 34 sediment samples, and were classified into 16 object categories (metadata_tables.tar.gz: Table 3). Object classification is provided in Table 3 and summarized in Table 4 (metadata_tables.tar.gz). Table 5 in metadata_tables.tar.gz provides a technical validation of the automated 2D morphometric measurements; comparable data validation for the 3D morphometric measurements are provided in Hsiang et al. 2016 (http://dx.doi.org/10.1098/rstb.2015.0227).</p> <p>Images and morphometric data are provided in 12 additional datasets:</p> <p><strong>1) slide_images.tar.gz</strong> contains one image for each slide scanned in this study (155 slides), with a red box around each object extracted using the <em>AutoMorph</em> segment module. Slides are named according to their YPM catalog number and related sample and site information can be found in Tables 1 and 2 (metadata_tables.tar.gz), and in the YPM database (http://collections.peabody.yale.edu/search/) by YPM catalog number. </p> <p><strong>2) edf_images.tar.gz</strong> contains the extended depth of focus images (EDF: a 2D image composite created from multiple z-stacked photographic images) generated by the <em>AutoMorph</em> focus module for each of the 124,230 individual objects identified by segment.</p> <p><strong>3 & 4) obj_zstacks_part1.tar.gz</strong> and <strong>obj_zstacks_part2.tar.gz</strong> contain the original zstack images of each object. 2D outlines and shape measurements for each object are extracted using the<em> AutoMorph</em> module run2dmorph. </p> <p><strong>5) 2d_outline_check.tar.gz</strong> provides an overlay of the extracted 2D outline on the object EDF for quality control purposes for all extracted objects (113,847 objects) and a text file of all objects with failed 2D extractions (10,384 objects).</p> <p><strong>6) 2d_coordinates.tar.gz</strong> provides the 2D coordinates of each object in a single csv (all_coordinates.csv) and by slide (155 csv files named according to YPM catalog number), and a text file of all objects with failed 2D extractions (10,384 objects).</p> <p><strong>7) shape_measurements.csv</strong> contains the complete list of all objects in the dataset (124,230 objects) with the 2D and 3D measurements extracted by the<em> AutoMorph</em> routines run2morph and run3dmorph when available.</p> <p><strong>8 & 9) 3d_pdfs_part1.tar.gz</strong> and <strong>3d_pdfs_part2.tar.gz</strong> provide 3D pdfs of each 3D object extracted (109,207 objects) for quality control purposes and a text file of all objects with failed 3D extractions (15,023 objects). 3D pdfs, meshes and shape measurements were generated by the <em>AutoMorph</em> module run3dmorph. Note that only some pdf viewers are able to display 3d pdfs properly. </p> <p><strong>10-12) 3d_obj_files_part1.tar.gz</strong>, <strong>3d_obj_files_part2.tar.gz</strong>, and <strong>3d_obj_files_part3.tar.gz</strong> provide the 3D mesh coordinates as obj files for each extracted object and a text file of all objects with failed 3D extractions (15,023 objects).</p> <p>This dataset accompanies the manuscript "Sixty-one thousand Recent planktonic foraminifera from the Atlantic Ocean" submitted to <em>Scientific Data</em>. The manuscript describes important details related to data collection and usage and should be consulted before using the data provided here. One key note about this dataset is repeated here as a precaution. We provide image classification for only 4/5<sup>th</sup>s of the complete data set. A random subset (1/5<sup>th</sup> of the classifications) are excluded as a test set, so that this image database can be used in machine learning.</p>
Figure 13 in The Beach-hopper Genus Platorchestia (Crustacea: Amphipoda: Talitridae) on Atlantic Ocean Coasts and on those of Associated Seas
Figure 13. Platorchestia griffithsi sp. nov., male holotype (9 mm), female paratype (8 mm), Knysna lagoon, South Africa.
Figure 5 in The Beach-hopper Genus Platorchestia (Crustacea: Amphipoda: Talitridae) on Atlantic Ocean Coasts and on those of Associated Seas
Figure 5. Above Platorchestia exter sp. nov., male holotype (11 mm), Newfoundland; below, Platorchestia oliveirae sp. nov., male holotype (9 mm), Parana State, Brazil.
Figure 2 in The Beach-hopper Genus Platorchestia (Crustacea: Amphipoda: Talitridae) on Atlantic Ocean Coasts and on those of Associated Seas
Figure 2. Platorchestia platensis (Krøyer, 1845), male paralectotype (12 mm), Montevideo, Uruguay (After Serejo, 2004, except uropods 1–2 from SEM).
Figure 9 in The Beach-hopper Genus Platorchestia (Crustacea: Amphipoda: Talitridae) on Atlantic Ocean Coasts and on those of Associated Seas
Figure 9. Platorchestia exter sp. nov., male holotype (11 mm), female paratype (10 mm), Newfoundland.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.