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Dataset results
319 results for “Cell biology”
Data from: The evolution of mass cell suicide in bacterial warfare (Current Biology 2020)
<p>Raw data presented in Granato & Foster Current Biology 2020.</p> <p>Data used to prepare each figure can be found under separate tabs. Tabs are labelled with their corresponding figure in the manuscript.</p>
DELVE: Feature selection for preserving biological trajectories in single-cell data
<p>Contains preprocessed single-cell data and metadata for feature selection. Preprocessed adata objects can be accessed using the <em>read_h5ad</em> function in anndata. Also contains the source data files for reproducing the Figures and Supplementary Figures referenced in the manuscript.</p> <ul> <li>The RPE iterative indirect immunofluorescence imaging dataset (adata_RPE.h5ad) from Ref. (<a href="https://doi.org/10.1016/j.cels.2021.10.007">https://doi.org/10.1016/j.cels.2021.10.007</a>) was originally downloaded from the Zenodo repository (<a href="https://doi.org/10.5281/zenodo.4525425">https://doi.org/10.5281/zenodo.4525425</a>).</li> <li>The PDAC iterative indirect immunofluorescence imaging datasets (listed below) were originally downloaded from the Zenodo repository (<a href="https://doi.org/10.5281/zenodo.7860332">https://doi.org/10.5281/zenodo.7860332</a>). <ul> <li>adata_PDAC_BxPC3_control.h5ad</li> <li>adata_PDAC_CFPAC_control.h5ad</li> <li>adata_PDAC_HPAC_control.h5ad</li> <li>adata_PDAC_MiaPaCa_control.h5ad</li> <li>adata_PDAC_Pa01C_control.h5ad</li> <li>adata_PDAC_Pa02C_control.h5ad</li> <li>adata_PDAC_Pa16C_control.h5ad</li> <li>adata_PDAC_PANC1_control.h5ad</li> <li>adata_PDAC_UM53_control.h5ad</li> </ul> </li> <li>The CD8+ T cell differentiation dataset (adata_CD8.h5ad) from Ref. (<a href="https://doi.org/10.1016/j.cels.2021.10.007">https://doi.org/</a><a href="https://doi.org/10.1126/sciimmunol.aaz6894">10.1126/sciimmunol.aaz6894</a>) was originally downloaded from the Gene Expression Omnibus under the accession code GSE131847 (<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138266">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131847</a>).</li> <li>The definitive endoderm differentiation dataset (adata_DE.h5ad) contains multiplexed single-cell RNA sequencing data profiling the differentiation of human embryonic stem cells into the definitive endoderm. </li> </ul>
Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus
<p>Dataset accompanying the manuscript "Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus". This dataset is used to re-create all figure panels with underlying data in the manuscript.</p>
Custom RevSC analysis files for Fink et al, 2024, in Nature Cell Biology.
<p>These files are the inputs and outputs for the analysis scripts at <a href="https://github.com/wrana-lab/revSC_tgfb">https://github.com/wrana-lab/revSC_tgfb</a></p> <p>This data and analysis is part of Fink et al, 2024, in Nature Cell Biology.</p> <p>It contains two folders, the main revSC_tgfb folder contains the inputs and outputs scripts along with intermediate files necessary for code execution, and the Seur_Objs folder which contains all of the Seurat objects used in this study as .RData files. </p> <p>The folder is provided as a .zip file which we recommend a utility such as WinRAR to extract.</p>
Supporting data for "Studying stochastic systems biology of the cell with single-cell genomics data"
<p>The dataset tar.gz files contain the raw unspliced and spliced count matrices generated by <em>kallisto</em>|<em>bustools</em> 0.26.0 from six datasets.</p> <p>The GVP_2023...zip file is a mirror of the related GitHub repository.</p>
Source data for "Genetically encoding multiple functionalities into extracellular vesicles for the targeted delivery of biologics to T cells"
<p>Source Data include all reported experimental data and plasmid maps for all plasmids generated in the associated publication, "Genetically encoding multiple functionalities into extracellular vesicles for the targeted delivery of biologics to T cells," which is in press at Nature Biomedical Engineering.</p>
Study of the Biological Mechanisms Associated With the Immunogenicity in Anaplastic Large Cell Lymphoma ( ALCL ) ALK +
ClinicalTrials.gov study NCT02902874. IPD Sharing: NO. Countries: 1. Publications: 0.
Combination Chemo, Peripheral Stem Cell Transplant, Biological Therapy, Pamidronate and Thalidomide for Multiple Myeloma
ClinicalTrials.gov study NCT00004088. IPD Sharing: NO. Countries: 1. Publications: 0.
Muscle Function and Its Biological and Physiological Determinants in Sickle Cell Disease
ClinicalTrials.gov study NCT03243812. IPD Sharing: NO. Countries: 1. Publications: 1.
Safety and Efficacy of Induced Pluripotent Stem Cell-derived Engineered Human Myocardium as Biological Ventricular Assist Tissue in Terminal Heart Failure
ClinicalTrials.gov study NCT04396899. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Treatment Response and Prognosis in Glioma Patients: Q Cell and Its Biological Characteristics
ClinicalTrials.gov study NCT02047058. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Clinical Trial With Adipose Tissue Stem Cells on Biological Matrix for the Treatment of Venous Ulcer of the Lower Limbs
ClinicalTrials.gov study NCT05962931. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Biological Factors Predicting Response to Chemotherapy in Advanced Non Small Cell Lung Cancer
ClinicalTrials.gov study NCT00864266. IPD Sharing: UNDECIDED. Countries: 1. Publications: 2.
A Single Dose Study of the Safety, Blood Levels and Biological Effects of Aes-103 Compared to Placebo in Subjects With Stable Sickle Cell Disease
ClinicalTrials.gov study NCT01597401. IPD Sharing: Not stated. Countries: 1. Publications: 14.
Combination Chemotherapy, Bone Marrow or Peripheral Stem Cell Transplantation, and/or Biological Therapy in Treating Patients With Stage III or Stage IV Mantle Cell Lymphoma
ClinicalTrials.gov study NCT00004231. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Study Testing the Biologic Activity and Safety of a Immunotherapeutic in Patients With Newly Diagnosed Advanced Stage Kidney Cancer in Combination With a Marketed Renal Cell Carcinoma Treatment
ClinicalTrials.gov study NCT00678119. IPD Sharing: Not stated. Countries: 2. Publications: 1.
Serum CA9 Level as Biological Marker of the Treatment Response in Metastatic Renal Cell Cancer
ClinicalTrials.gov study NCT00942058. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Safety and Biological Activity of TroVax® Vaccine Given With IL-2 in Renal Cell Carcinoma
ClinicalTrials.gov study NCT00325507. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Prospective Collection of Biological Data of Prognostic Relevance in Patients With B-Cell Chronic Lymphocytic Leukemia
ClinicalTrials.gov study NCT00917540. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Study of the Biological Function of Muscle Satellite Cells From Patients With Obstetric Brachial Plexus Palsy
ClinicalTrials.gov study NCT05403034. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.