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Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2015-2017</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2009-2011</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2012-2014</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2006-2008</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2003-2005</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

Global Pasture Watch - Annual grassland class and extent maps at 30-m spatial resolution (2000—2024)

<h2>Sub-dataset: Dominant grassland class, 2000-2002</h2> <h2>Description</h2> Global annual grassland class and extent for 2000—2024 produced by <a href="https://doi.org/10.1038/s41597-024-04139-6">Parente et al. (2024)</a> within the scope of the <a href="https://landcarbonlab.org/data/global-grassland-and-livestock-monitoring/">Global Pasture Watch initiative</a>. The mapped grassland extent includes any land cover type, which contains at least 30% of dry or wet low vegetation, dominated by grasses and forbs (less than 3 meters) and a: <ul> <li>maximum of 50% tree canopy cover (greater than 5 meters),</li> <li>maximum of 70% of other woody vegetation (scrubs and open shrubland), and</li> <li>maximum of 50% active cropland cover in mosaic landscapes of cropland & other vegetation.</li> </ul> The grassland extent is classified into two classes: <ul> <li>Cultivated grassland: Areas where grasses and other forage plants have been intentionally planted and managed, as well as areas of native grassland-type vegetation where they clearly exhibit active and 'heavy' management for specific human-directed uses, such as directed grazing of livestock.</li> <li>Natural/semi-natural grassland: Relatively undisturbed native grasslands/short-height vegetation, such as steppes and tundra, as well as areas that have experienced varying degrees of human activity in the past, which may contain a mix of native and introduced species due to historical land use and natural processes. In general, they exhibit natural-looking patterns of varied vegetation and clearly ordered hydrological relationships throughout the landscape.</li> <li>Open shrubland (v2-beta): Land on which the vegetation is dominated by low-growing woody plants, characterized by a sparse distribution of shrubs and dominated by woody perennials. Typically covers 50—75% of the area, with significant open ground (with or without herbaceous understory) between them, where shrub canopies are less than 10 meters in diameter, and tree cover is below 10%, meaning they do not form a continuous or semi-continuous canopy.</li> </ul> The dataset is organized in 69 global mosaics (25 years for each time series) in COG (Cloud Optimized GeoTIFF) format, WGS84 Coordinate Systems (EPSG:4326) and pixel size equal to 0.00025 degrees, including: <ul> <li>Probabilities of cultivated grassland (values range from 0–100),</li> <li>Probabilities of natural/semi-natural grassland (values range from 0–100), and</li> <li>Probabilities of open shrubland (values range from 0–100), and</li> <li>Dominant class (0-other land cover, 1-cultivated grassland and 2-natural/semi-natural grassland, 3-open shrubland).</li> </ul> All raster files are in unsigned <code>8-bit integer format</code> and use <code>255</code> as no-data value (pixels ignored by prediction), following an specific naming convention: <ol> <li>Project name: Global Pasture Watch (<code>gpw</code>)</li> <li>Class name: cultivated grassland (<code>cultiv.grassland</code>), natural/semi-natural grassland (<code>nat.semi.grassland</code>), open shrubland (<code>open.shrubland</code>)  and dominant grassland (<code>grassland</code>)</li> <li>Procedure combination: Random Forest (<code>rf</code>), median filter (med.filt) and balanced threshold (<code>bthr</code>).</li> <li>Variable type: probability (<code>p</code>) and factor class (<code>c</code>)</li> <li>Spatial resolution: 30m</li> <li>Begin of time reference: date of first Landsat composite used by the modeling (<code>20240101</code>)</li> <li>End of time reference: date of last Landsat composite used by the modeling (<code>20241231</code>)</li> <li>Spatial extent: global (<code>go</code>)</li> <li>Coordinate system: World Geodetic System 1984, used in GPS (<code>epsg.4326</code>)</li> <li>Version: v2</li> </ol> <h3>Related resources</h3> <ul> <li>Maps of dominant grassland: <a href="http://doi.org/10.5281/zenodo.15646181">2000-2002</a><a href="http://doi.org/10.5281/zenodo.15644486"> 2003-2005</a><a href="http://doi.org/10.5281/zenodo.15644623"> 2006-2008</a><a href="http://doi.org/10.5281/zenodo.15647042"> 2009-2011</a><a href="http://doi.org/10.5281/zenodo.15647681"> 2012-2014</a><a href="http://doi.org/10.5281/zenodo.15648306"> 2015-2017</a><a href="http://doi.org/10.5281/zenodo.15648551"> 2018-2020</a><a href="http://doi.org/10.5281/zenodo.15648751"> 2021-2023</a> <a href="http://doi.org/10.5281/zenodo.15649332">2024</a></li> <li>Probability maps of cultivated grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li>Probability maps of natural/semi-natural grassland: <a href="https://zenodo.org/records/13890401/files/ggc-30m.csv?download=1">2000-2024 (All URLs)</a></li> <li> <div>Grassland reference samples based on VHR imagery (2000–2024): <a href="https://doi.org/10.5281/zenodo.15631655">GeoPackage files</a></div> </li> <li>Global machine learning models (Random Forest): <a href="https://doi.org/10.5281/zenodo.13952806">Parquet and joblib python files</a></li> <li>Reference sampling design derived by FSCV: <a href="https://doi.org/10.5281/zenodo.11391517">GeoPackage and raster files</a></li> <li>Harmonized reference samples based on existing LULC dataset: <a href="https://doi.org/10.5281/zenodo.13951976">GeoPackage and raster files</a></li> <li>Source code for reproducibility: <a href="https://doi.org/10.5281/zenodo.13952867">GitHub release</a> </li> <li>Mapping feedback tool: <a href="https://geo-wiki.org">GeoWiki</a></li> <li>Data catalogues: <a href="https://stac.openlandmap.org/gpw_ggc-30m/collection.json?.language=en">OpenLandMap STAC</a> <a href="https://global-pasture-watch.projects.earthengine.app/view/ggc-30m">Google Earth Engine</a></li> </ul> Support For questions of bugs/inconsistencies related to the dataset raise a GitHub issue in <a href="https://github.com/wri/global-pasture-watch">https://github.com/wri/global-pasture-watch</a>

PheKnowLator Human Disease KG Benchmarks: Class-Standard Relations-OWL (v2.0.0 - January 2021)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-Standard Relations-OWLBuild Date: January 25, 2021 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/January-25%2C-2021">here</a>.</li></ul>

PheKnowLator Human Disease KG Benchmarks: Class-Inverse Relations-OWL (v2.0.0 - January 2021)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-Inverse Relations-OWLBuild Date: January 25, 2021 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/January-25%2C-2021">here</a>.</li></ul>

opencc-by-4.0Apr 2020View details →

PheKnowLator Human Disease KG Benchmarks: Class-Inverse Relations-OWLNETS (v2.0.0 - May 2020)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-InverseRelations-OWLNETSBuild Date: May 10, 2020 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/May-10%2C-2020">here</a>.</li></ul>

PheKnowLator Human Disease KG Benchmarks: Class-Standard Relations-OWLNETS (v2.0.0 - January 2021)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-Standard Relations-OWLNETSBuild Date: January 25, 2021 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/January-25%2C-2021">here</a>.</li></ul>

PheKnowLator Human Disease KG Benchmarks: Class-Inverse Relations-OWLNETS (v2.0.0 - January 2021)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-Inverse Relations-OWLNETSBuild Date: January 25, 2021 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/January-25%2C-2021">here</a>.</li></ul>

opencc-by-4.0Apr 2020View details →

PheKnowLator Human Disease KG Benchmarks: Class-Inverse Relations-OWL (v2.0.0 - May 2020)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-InverseRelations-OWLBuild Date: May 10, 2020 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/May-10%2C-2020">here</a>.</li></ul>

opencc-by-4.0Apr 2020View details →

PheKnowLator Human Disease KG Benchmarks: Class-Standard Relations-OWLNETS (v2.0.0 - May 2020)

PKT Human Disease Knowledge Graph Benchmark Builds (v2.0.0)Build Type: Class-Standard Relations-OWLNETSBuild Date: May 10, 2020 <h3>Important Build Information</h3>The benchmarks were originally built and stored using Google Cloud Platform (GCP) resources. For details and a complete description of this process, can be found on GitHub (<a href="https://github.com/callahantiff/PheKnowLator/tree/master/builds#readme">here</a>). Note that we have developed an archive for the builds on Zenodo. While the original GCP resources contained all associated files, due to the file size upload limits associated with each archive, we have limited the uploaded files to the KGs, associated metadata, and log files. The list of resources, including their URLs, and date of download, can all be found in the associated logs.Details on each of the files generated by the build process can be found in the file associated with this directory (<a href="https://zenodo.org/records/10065431/files/PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx?download=1">PheKnowLator_HumanDiseaseKG_Output_FileInformation.xlsx</a>). 🚨 AVAILABLE FILES 🚨 <ul><li>Available KG benchmark files are zipped and listed below.</li><li>For additional details on what each file contains, please see the associated Wiki page 👉 <a href="https://github.com/callahantiff/PheKnowLator/wiki/May-10%2C-2020">here</a>.</li></ul>

opencc-by-nc-4.0Aug 2015View details →

Grammatical functions, inflectional class and textual frequency in Russian nominals

The following datasets were created for the ESRC-funded project 'Paradigms in use' (https://www.smg.surrey.ac.uk/projects/paradigms/) (RES-000-23-0082): The datasets are in the form of 8 EXCEL spreadsheets. The lexemes recorded in the datasets are those represented by word forms occurring in total at least five times. Lexemes occurring less than five times were excluded to avoid large standard errors in the estimates which occur when observed numbers in each category are small (Corbett, Hippisley, Brown and Marriott 2001:208).

opencc-by-4.0Mar 2024View details →

Dataset: The effects of class balance on the training energy consumption of logistic regression models

Two synthetic datasets for binary classification, generated with the Random Radial Basis Function generator from WEKA. They are the same shape and size (104.952 instances, 185 attributes), but the "balanced" dataset has 52,13% of its instances belonging to class c0, while the "unbalanced" one only has 4,04% of its instances belonging to class c0. Therefore, this set of datasets is primarily meant to study how class balance influences the behaviour of a machine learning model.

opencc-by-4.0Nov 2021View details →

Simulated NGS read datasets for prediction of novel fungal pathogens and multiple pathogen classes

This repository contains simulated Illumina read datasets for novel fungal pathogen prediction and real-time detection of multiple pathogen classes. They were used to train the models hosted at <a href="https://zenodo.org/record/5711877">https://zenodo.org/record/5711877</a>. The reads were simulated with Mason (<a href="https://www.seqan.de/apps/mason/">https://www.seqan.de/apps/mason/</a>) from genomes downloaded from NCBI, based on metadata stored in a manually curated database (<a href="https://zenodo.org/record/5846345">https://zenodo.org/record/5846345</a>). We provide the following: 1) An rds file describing assignment of fungal species from the database (<a href="https://zenodo.org/record/5846345">https://zenodo.org/record/5846345</a>) to training, validation and test sets (TrainValTest_fungi.rds). A second rds file (TrainValTest_temporal.rds) includes species added within 12 weeks after the original datasets were compiled. Those species were used for a temporal benchmark. 2) Fungal validation and test sets. Each contains 1.25 million, 250bp-long reads simulated from non-overlapping sets of human ("pathogenic") or non-human ("nonpathogenic") pathogens. The test set contains paired reads ("_1" and "_2" for the first and second mate). The number of reads per species is proportional to the respective genome length. An additional, temporal test set (*temporal*fasta.gz) includes 15 species added after 12 weeks from the consturction of the original datasets. 3) Fungal training sets. They contain 250bp-long reads simulated from species not present in the validation or test sets. There are four variants: 3a) "low-coverage, linear" - 20 million reads, number of reads per species proportional to genome length 3b) "low-coverage, logarithmic" - 20 million reads, number of reads per species proportional to the logarithm of genome length ("log") 3c) "high-coverage, linear" - 240 million reads, number of reads per species proportional to genome length  ("24") 3d) "high-coverage, logarithmic" - 240 million reads, number of reads per species proportional to the logarithm of genome length  ("24log") 4) Training, validation and test sets for the multiclass models. They should be used together with the "pathogenic" read sets hosted at <a href="https://zenodo.org/record/4456857">https://zenodo.org/record/4456857</a>. Here, we share sets for two of the four total classes: 4a) The 'non-pathogen' class is a mixture of "nonpathogenic" biacterial and viral read sets, concatenated and downsampled to the original read number (20M for training, 1.25M for validation and test). The training and validation sets contain mixed-length (25-20bp) simulated subreads (original sets hosted here: <a href="https://zenodo.org/record/4456857">https://zenodo.org/record/4456857</a>). The test set contains 250bp long reads based on the test sets from here: <a href="https://zenodo.org/record/3678563">https://zenodo.org/record/3678563</a> and here: <a href="https://zenodo.org/record/4312525">https://zenodo.org/record/4312525</a>; it was also sorted by species. 4b) Mixed-length versions of the "pathogenic" fungal training and validation sets, prepared by random shortening of the "low-coverage" read sets in the "linear" (_rn_) and "logarithmic" (_rn_*log_) flavours. See also the preprint: <a href="https://www.biorxiv.org/content/10.1101/2021.11.30.470625">https://www.biorxiv.org/content/10.1101/2021.11.30.470625</a>

opencc-by-4.0Jan 2022View details →

Effects of the type of lunch meal and teaching-learning methods on CRI student engagement in afternoon classes.

The post-lunch slump is a natural dip in energy caused not only by our circadian cycles but also as a result of digestive processes in our body after consuming lunch meals. It being a widely known concept, there are ample studies that focus on its effects on academic performance of students. While this dip in energy does affect student engagement to a large extent, there are also studies on how the teaching-learning methods are a factor affecting academic performance. However, there are no relevant studies that aim to look at both these factors in tandem, i.e. the effect of lunch along with the teaching-learning methods in the afternoon classrooms as factors influencing academic performance and student engagement. This paper aims to study this area of topic hypothesising that having a more balanced lunch along with engaging in more interactive classes would positively correlate with student engagement in afternoon classes. The study was conducted with bachelors and masters students at the CRI, University of Paris through surveys that were sent to students at the end of their class day.  Due to lack of adequate data, the study was not able to produce significant correlations. However smaller nuances of the relationship between lunch, teaching-learning methods and student engagement were found. While engagement in classrooms did seem to be maximum when it was interactive and only 50% of students' lunch was formed of carbohydrates, no significant correlations were found to confirm the hypotheses.

opencc-by-4.0May 2022View details →

Towards a systematic approach to manual annotation of code smells - C# Dataset of Long Method and Large Class code smells

This dataset includes open-source projects written in C# programing language, annotated for the presence of Long Method and God Class code smells. Each instance was manually annotated by at least two annotators. We explain our motivation and methodology for creating this dataset in our <a href="https://www.techrxiv.org/articles/preprint/Towards_a_systematic_approach_to_manual_annotation_of_code_smells/14159183/1">preprint</a>: Luburić, N., Prokić, S., Grujić, K.G., Slivka, J., Kovačević, A., Sladić, G. and Vidaković, D., 2021. Towards a systematic approach to manual annotation of code smells.  The dataset contains two excel datasheets: <ul> <li>DataSet_Large Class.xlsx – C# classes annotated for the Large Class code smell severity.</li> <li>DataSet_Long Method.xlsx – C# methods annotated for the Long method code smell severity.</li> </ul>  The columns in the datasheet represent: <ul> <li>Code Snippet ID – the full name of the code snippet.  <ul> <li>For classes, this is the package/namespace name followed by the class name. The full name of inner classes also contains the names of any outer classes (e.g., namespace.subnamespace.outerclass.innerclass).</li> <li>For methods, this is the full name of the class and the methods’s signature (e.g., namespace.class.method(param1Type, param2Type) ).</li> </ul> </li> <li>Link – The GitHub link to the code snippet, including the commit and the start and end LOC.</li> <li>Code Smell – code smell for which the code snippet is examined (Large Class or Long Method).</li> <li>Project Link – the link to the version of the code repository that was annotated.</li> <li>Metrics – a list of metrics for the code snippet, calculated by our <a href="https://github.com/Clean-CaDET/platform#readme">platform</a>. Our dataset provides 25 class-level metrics for Large Class detection and 18 method-level metrics for Long Method detection The list of metrics and their definitions is available <a href="https://github.com/Clean-CaDET/platform/blob/c4acff95ec00ff6c25fa62dde4818c1f40e39d39/CodeModel/CaDETModel/CodeItems/CaDETMetrics.cs">here</a>.</li> <li>Final annotation – a single severity score calculated by a majority vote. </li> <li>Annotators – each annotator's (1, 2, or 3) assigned severity score.</li> </ul> To help guide their reasoning for evaluating the presence and the severity of a code smell, three annotators independently annotated whether the considered heuristics apply to an evaluated code snippet. We provide these results in two separate excel datasheets: <ul> <li>LargeClass_Heuristics.xlsx - C# classes annotated for the presence of heuristics relevant for the Large Class code smell.</li> <li>LongMethod_Heuristics.xlsx - C# classes annotated for the presence of heuristics relevant for the Large Class code smell.</li> </ul> The columns of these two datasheets are: <ul> <li>Code Snippet ID - the full name of the code snippet (matching the IDs from DataSet_Large Class.xlsx and DataSet_Long Method.xlsx)</li> <li>Annotators – heuristics labelled by each of the annotators (1, 2, or 3).</li> <li>Heuristics – whether the heuristic is applicable to the examined code snippet or not (Section 1.2.4 lists heuristics relevant for the Large Class detection, and Section 1.2.5 lists the heuristics relevant for the Long Method detection).</li> </ul>

opencc-by-4.0May 2022View details →

Phase I trial of CX-5461, a first-in-class G-quadruplex stabilizer in patients with advanced solid tumors enriched for DNA-repair deficiencies (CCTG IND.231) - Variant Calls

Variant Calls from Phase I trial of CX-5461, a first-in-class G-quadruplex stabilizer in patients with  advanced solid tumors enriched for DNA-repair deficiencies (CCTG IND.231) See publication for methodology.