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39 results for “DMP”
DMP Project Nutrition
<p>A machine-actionable Data Management Plan of the project Nutrition and a Data Management Plan created using the Horizon2020 template.</p> <p>These plans were created for educational purposes within the 'Data Stewardship' lecture at the University of Technology, Vienna.</p>
Data Management Plan (DMP)
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Figure 7 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 7 Stygepactophanesjurassicus Moeschler & Rouch, 1984. A P1, frontal B P3, frontal C P3, distal end of exopodal segment 3, enlarged D P3, frontal E P3, distal end of exopodal segment 3, enlarged F P4, caudal view G P5-bearing somite with P5 absent, ventral view (B, C female holotype A, D–G: male paratype).
Figure 6 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 6 Stygepactophanesjurassicus Moeschler & Rouch, 1984. A Female urosome, ventral view (P5-bearing somite with P5 absent, left side, right side broken) B Female inner terminal seta (V), ventral view C Male urosome, ventral (A, B female holotype C male paratype).
Figure 4 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 4 Stygepactophanesoccitanus sp. n. (female paratype) A P2, frontal view B P3, caudal view C P3, exopod 2, opposite side, frontal view D P4, frontal view E P5, caudal view.
Figure 2 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 2 Stygepactophanesoccitanus sp. n. (female paratype) A Urosome, ventral view (arrow indicates anterolateral setae, enlarged) B Inner terminal seta (V) of caudal rami C Posteroventral edge of P4-bearing somite D Anal somite and caudal rami, dorsal view E P6 and genital complex, enlarged F P1, frontal.
Figure 5 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 5 Stygepactophanesoccitanus sp. n. (female paratype) Optical microscopy micrographs. A Maxilliped B P1 C P4 D P5.
Figure 3 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 3 Stygepactophanesoccitanus sp. n. (female paratype) A Contour of rostrum and antennule, dorsal view B Antennule, exploded, armament distribution C Antenna D Mandible E Labium F Labrum G Maxillule, frontal view (arrows indicating elements on caudal face, see H) H Maxillular arthrite, caudal view (arrows indicating elements not discernable in frontal view) I Maxilla, frontal view J Maxilliped, frontal view.
Figure 1 from: Galassi DMP, Fiers F, Dole-Olivier M-J, Fiasca B (2019) Discovery of a new species of the genus Stygepactophanes from a groundwater-fed spring in southern France (Crustacea, Copepoda, Harpacticoida, Canthocamptidae). ZooKeys 812: 69-91. https://doi.org/10.3897/zookeys.812.29764
Figure 1 Stygepactophanesoccitanus sp. n. (female paratype) A Habitus, dorsal view B Habitus, lateral view C Left caudal ramus, outer lateral view, enlarged.
Dataset and R code from RDA WG Discipline-Specific Guidance on DMP - Online Survey
<p>Dataset from the Online Survey of the <a href="https://www.rd-alliance.org/groups/discipline-specific-guidance-data-management-plans-wg">Research Data Alliance's Discipline-Specific Guidance for Data Management Plans Working Group</a>.</p> <p><br> The data was collected from November 8, 2021 to January 14, 2022.</p> <p>The survey was divided into the following areas after a brief introduction on "Purpose of this survey" and "Use of the information you provide."</p> <ul> <li>Demographics</li> <li>Data Description and Collection</li> <li>Data Documentation & Quality</li> <li>Data Archiving, Publishing & Sharing After the Project</li> <li>Guidelines, Principles & Best Practices</li> <li>Follow-up interviews and group discussions</li> </ul> <p>The analysis of the online survey was focused on the four areas: Natural Sciences, Life Sciences, Humanities & Social Sciences, and Engineering. The results of the evaluation will be presented in a separate publication.</p> <p>In addition to the data, the variables and values are also published here.</p> <p>The online survey questions can be accessed here: https://doi.org/10.5281/zenodo.7443373</p> <p>A more detailed analysis and description can be found in the paper "Discipline-specific Aspects in Data Management Planning" submitted to Data Science Journal (2022-12-15).</p>
Disease Management Platform for Heart Failure (DMP-HF)
ClinicalTrials.gov study NCT04782973. IPD Sharing: NO. Countries: 1. Publications: 0.
A Study of Indinavir Taken With or Without DMP 266
ClinicalTrials.gov study NCT00002393. IPD Sharing: Not stated. Countries: 3. Publications: 1.
DMP of CityComPlastic
<p>Raw version of the DMP generated by CityComPlastic with the DMP Tool</p>
A Study of DLX105-DMP in Subjects With Plaque Psoriasis
ClinicalTrials.gov study NCT04203433. IPD Sharing: NO. Countries: 1. Publications: 0.
GNE-Myopathy Disease Monitoring Program (GNEM-DMP): A Registry and Prospective Observational Natural History Study to Assess GNE Myopathy or Hereditary Inclusion Body Myopathy (HIBM)
ClinicalTrials.gov study NCT01784679. IPD Sharing: Not stated. Countries: 5. Publications: 0.
A Phase II Study of DMP 115 to Assess Focal Liver Lesions
ClinicalTrials.gov study NCT00162058. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Transcriptional expression of ICC-DMP and ICC-MY in murine small intestine
GEO Series GSE7809. Mus musculus. 8 samples. Type: Expression profiling by array.
The Safety and Effectiveness of 1592U89 Plus 141W94 Plus DMP 266 in Patients With HIV Who Developed a Resistance to Protease Inhibitors
ClinicalTrials.gov study NCT00002213. IPD Sharing: Not stated. Countries: 1. Publications: 0.
DMP: Production and detection of HIV-Gag particles produced by Saccharomyces cerevisiae
<h2>dataset description</h2> <p>doi: 10.70124/kzk0s-kdq60</p> <p>The following description is used to give a comprehensive overview of the data structure and data management generated in a set of experiments designed to answer the following questions:</p> <ol> <li>can we establish a robust production and purification system for HIV-Gag virus-like particles (VLPs) in the yeast <em>Saccharomyces cerevisiae</em>?</li> <li>can we also show the same results with an already described modified version called Gag:sGFP?</li> </ol> <p><strong>important abbreviations</strong>:</p> <p><strong>Gag</strong> - group-specific antigen, a core structural protein-complex found in some viruses in different variants.</p> <p><strong>sGFP</strong> - superfolder green fluorescent protein, a common reporter used in biochemical and microbiological experiments which matures quickly after expression and is suitable for strong overexpression systems.</p> <p><strong>HIV</strong> - human immunodeficiency virus, an immune system compromising virus specific to humans.</p> <p><strong>v</strong>irus-<strong>l</strong>ike <strong>p</strong>article - also called <strong>VLP</strong>; a non-infectious particle that resembles a mature virus but lacks key features like the ability to self-reproducet or other virulent factors. In the case of the HIV-Gag it mainly consist of the Gag protein, which self-assembles at the host cell wall and is released as a spherical structure.</p> <p>The data in this dataset is generated, collected, and analyzed by Adrian Köber.</p> <h3>Context and methodology</h3> <ul> <li>This project mainly involves methods from the fields of biochemistry and microbiology. It includes SDS-PAGE, Western Blotting, and fluorescence in 96-well format, and general cultivation methods for yeast.</li> <li>This dataset serves the main purpose of showing the robustness of the laboratory procedure which is used to generate and purify the VLPs, which is built on two main publications.</li> <li>This dataset was created as a part of my Ph.D. thesis project and resolves around a center point of the underlying laboratory procedures.</li> </ul> <h3>Technical details</h3> <ul> <li>The general structure of the dataset will include the raw data from fluorescence measurements in .csv format with appropriate sample tags to identify the samples, possible dilutions, used volumes, or other relevant information. Pictures are saved as .tiff in an unaltered version. There will be descriptive metadata or README files for each dataset and a general README file for the overall process description, which also includes a detailed protocol for the method with the aim of providing an in-depth manual to redo the experiments themselves.</li> <li>The analyzed and annotated data will also be provided in a .csv or .tiff format appropriate to the data structure; e.g. tabular data -> .csv</li> <li>The dataset will include a three-layered folder structure with a main folder containing the sub-folders for the raw and analyzed data, which in turn include folders for the different experiment parts. The naming convention is described in the appended metadata file, in short: main folder: experiment ID, sub-folder: experiment IDraw/anaylzed, internal folder: experiment ID_raw_date.</li> <li>The aim is to have no proprietary software needed to open or evaluate the data itself. Data will be processed in Excel, Powerpoint, or Texteditor to the stated level of detail and then converted to a non-proprietary file format (.csv; .tiff; .xml; .rtf)</li> <li>There will be also proprietary data formats like .xlsx and .scn, which can be used, if possible.</li> <li>The dataset includes a general metadata description/documentation in .rtf format which will include the necessary details for the procedure, data analysis, and data provenance.</li> </ul> <h3>Further details</h3> <ul> <li>To re-do the experiments it will be necessary to have access to the correct <em>S. cerevisiae</em> strains, which are owned by the group of Matthias Steiger (TU Wien, E166-5-2) and are located in the BH building of the Campus Getreidemarkt at the Gumpendorfer Straße 1A, 1060 Wien, Austria. For that please contact adrian.koeber@tuwien.ac.at or matthias.steiger@tuwien.ac.at</li> <li>The genetic construct maps will also be provided in an open-source format with annotations to discern the crucial genetic components.</li> <li>If there are questions concerning the re-use of the data please contact adrian.koeber@tuwien.ac.at or matthias.steiger@tuwien.ac.at.</li> </ul>
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