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158 results for “Earth system”

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zenodo40/100

Global 1km Land Surface Parameters for Kilometer-Scale Earth System Modeling (LAI_2016_2020)

<p>Earth system models (ESMs) are progressively advancing towards the kilometer scale (k-scale). However, the surface parameters for Land Surface Models (LSMs) within ESMs running at the k-scale are typically derived from coarse resolution and outdated datasets. This study aims to develop a new set of global land surface parameters with a resolution of 1 km for multiple years from 2001 to 2020, utilizing the latest and most accurate available datasets. Specifically, the datasets consist of parameters related to land use and land cover, vegetation, soil, and topography. Differences between the newly developed 1k land surface parameters and conventional parameters emphasize their potential for higher accuracy due to the incorporation of the most advanced and latest data sources. To demonstrate the capability of these new parameters, we conducted 1 km resolution simulations using the E3SM Land Model version 2 (ELM2) over the contiguous United States. Our results demonstrate that land surface parameters contribute to significant spatial heterogeneity in ELM2 simulations of soil moisture, latent heat, emitted longwave radiation, and absorbed shortwave radiation. On average, about 31% to 54% of spatial information is lost by upscaling the 1 km ELM2 simulations to a 12 km resolution. Using eXplainable Machine Learning (XML) methods, the influential factors driving the spatial variability and spatial information loss of ELM2 simulations were identified, highlighting the substantial impact of the spatial variability and information loss of various land surface parameters, as well as the mean climate conditions. The comparison against four benchmark datasets indicates that ELM generally performs well in simulating soil moisture and surface energy fluxes. The new land surface parameters are tailored to meet the emerging needs of k-scale LSMs and ESMs modeling with significant implications for advancing our understanding of water, carbon, and energy cycles under global change.&nbsp;</p> <p>This data repository is linked to <a href="../records/10815170" target="_blank" rel="noopener">https://zenodo.org/records/10815170</a></p>

opencc-by-4.0Jan 2024View details →
zenodo40/100

Global 1km Land Surface Parameters for Kilometer-Scale Earth System Modeling (LAI_2001_2005)

<p>Earth system models (ESMs) are progressively advancing towards the kilometer scale (k-scale). However, the surface parameters for Land Surface Models (LSMs) within ESMs running at the k-scale are typically derived from coarse resolution and outdated datasets. This study aims to develop a new set of global land surface parameters with a resolution of 1 km for multiple years from 2001 to 2020, utilizing the latest and most accurate available datasets. Specifically, the datasets consist of parameters related to land use and land cover, vegetation, soil, and topography. Differences between the newly developed 1k land surface parameters and conventional parameters emphasize their potential for higher accuracy due to the incorporation of the most advanced and latest data sources. To demonstrate the capability of these new parameters, we conducted 1 km resolution simulations using the E3SM Land Model version 2 (ELM2) over the contiguous United States. Our results demonstrate that land surface parameters contribute to significant spatial heterogeneity in ELM2 simulations of soil moisture, latent heat, emitted longwave radiation, and absorbed shortwave radiation. On average, about 31% to 54% of spatial information is lost by upscaling the 1 km ELM2 simulations to a 12 km resolution. Using eXplainable Machine Learning (XML) methods, the influential factors driving the spatial variability and spatial information loss of ELM2 simulations were identified, highlighting the substantial impact of the spatial variability and information loss of various land surface parameters, as well as the mean climate conditions. The comparison against four benchmark datasets indicates that ELM generally performs well in simulating soil moisture and surface energy fluxes. The new land surface parameters are tailored to meet the emerging needs of k-scale LSMs and ESMs modeling with significant implications for advancing our understanding of water, carbon, and energy cycles under global change.&nbsp;</p> <p>This data repository is linked to <a href="../records/10815170" target="_blank" rel="noopener">https://zenodo.org/records/10815170</a></p>

opencc-by-4.0Jan 2024View details →
zenodo40/100

Dataset and scripts for manuscript "Using Neural Network Ensembles to Separate Ocean Biogeochemical and Physical Drivers of Phytoplankton Biogeography in Earth System Models"

<p>Please note: The title of this version contains an updated title for the manuscript compared to the previous version of this dataset. This is only due to title updates during the peer review process for the manuscript.</p> <p>The zip file contains&nbsp;the scripts, functions, and source files&nbsp;for the manuscript titled &quot;Using Neural Network Ensembles to Separate Ocean Biogeochemical and Physical Drivers of Phytoplankton Biogeography&nbsp;in Earth System Models.&quot; The manuscript has been submitted for peer review.</p> <p>Please consult the README&nbsp;file for information on the specifications of the files.</p> <p>These files may occasionally be updated to add annotations to the scripts to make them more user friendly and to correct any errors.</p>

opencc-by-4.0Dec 2021View details →
zenodo40/100

Global demand data for PyPSA-Earth: An Open Optimisation Model of the Earth Energy System.

<p><strong>PyPSA-Earth </strong>is an open model dataset of the global power system at different network levels that cover our Earth. The African model can be built using the code provided at <a href="https://github.com/pypsa-meets-africa/pypsa-africa">https://github.com/pypsa-meets-africa/pypsa-africa</a>. Other regions follow soon under the same code base.</p> <p>Since the GitHub codebase is not suited for handling large changing files, we provide here separate <strong>data bundles and cutouts</strong> to be downloaded and extracted as noted in the <a href="https://pypsa-meets-africa.readthedocs.io/en/latest/index.html">documentation</a></p> <p>The below-provided <strong>resource file </strong>contains demand time-series generated by <a href="https://github.com/niclasmattsson/GlobalEnergyGIS/blob/b23206f8701acafdf7359f9cc952dfd4e7b819e5/src/downloaddatasets.jl">GEGIS</a> covering the world. The time series are produced for different socio-economic scenarios (SSP), weather years, and prediction years<strong>.</strong></p>

opencc-by-4.0Jan 2022View details →
zenodo40/100

The NUIST Earth System Model (NESM) version 3: Description and preliminary evaluation

<p>The model code and necessary data: NESMv3_gmd.tar.gz.</p> <p>The model manual :Using NESM v3 model.pdf</p> <p>The&nbsp; reference:&nbsp;Reference.tar.gz</p>

opencc-by-4.0Jan 2018View details →
zenodo40/100

Auxiliary data for Moustakis et al. 2024 "Temperature overshoot responses to ambitious forestation in an Earth System Model"

<p>The netcdf file "Moustakis_et_al_2024_Data.nc" contains all the key variables presented in the figures of the manuscript of Moustakis et al. 2024: "Temperature overshoot responses to ambitious forestation in an Earth System Model".</p> <p>Please read the README.txt file for more information on the variables included.</p> <p>For any further queries please refer to the corresponding author, Yiannis Moustakis:&nbsp;<br>yiannis.moustakis@geographie.uni-muenchen.de</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2024View details →
zenodo40/100

IPSL-CM5A2. An Earth System Model designed for multi-millennial climate simulations: Boundary conditions and outputs.

<p>Inputs, boundary conditions, and ouputs files of the experiments described in Sepulchre et al. manuscript &quot;<em>IPSL-CM5A2. An Earth System Model designed for multi-millennial climate simulations</em>&quot; submitted for publication to Geoscientific Model Development:</p> <p><a href="https://www.geosci-model-dev-discuss.net/gmd-2019-332"><strong>https://www.geosci-model-dev-discuss.net/gmd-2019-332</strong></a></p> <p>The&nbsp;90Ma_IPSLCM5A2_inputs.tar tarball contains the input and boundary files used to run the 3,000-year Cretaceous experiment.</p> <p>The output_files.tar tarball contains the netcdf output files of the preindustrial, historical and Cretaceous simulations analyzed in the manuscript. Diagnoses are presented through a Jupyter notebook that can be retrieved and played interactively <strong><a href="https://doi.org/10.5281/zenodo.3549652"><strong>here</strong></a>.</strong></p> <p><strong>&nbsp;</strong></p>

opencc-by-4.0Nov 2019View details →
zenodo40/100

Winter Precipitation-Type Models for "Evidential Deep Learning: Enhancing Predictive Uncertainty Estimation for Earth System Science Applications"

<p>This contains trained model weights, scalers, and evaluation metrics for the winter precipitation-type models trained as part of the paper "Evidential Deep Learning: Enhancing Predictive Uncertainty Estimation for Earth System Science Applications".&nbsp;</p>

opencc-by-4.0Sep 2024View details →
zenodo40/100

SeasFire Cube: A Global Dataset for Seasonal Fire Modeling in the Earth System

<p>The <strong>SeasFire Cube</strong>&nbsp;is a scientific datacube for seasonal fire forecasting around the&nbsp;<strong>globe</strong>. Apart from seasonal fire forecasting, which is the aim of the SeasFire project, the datacube can be used for several other tasks. For example, it can be used to model teleconnections and memory effects in the earth system. Additionally, it can be used to model emissions from wildfires and the evolution of wildfire regimes.<br> <br> It has been created in the context of the <a href="https://seasfire.hua.gr/">SeasFire project</a>, which deals with &quot;<em>Earth System Deep Learning for Seasonal Fire Forecasting</em>&quot; and <strong>is funded by the European Space Agency (ESA) </strong>&nbsp;in the context of ESA Future EO-1 Science for Society Call.<br> <br> It contains <strong>21 years</strong>&nbsp;of data (2001-2021) in an&nbsp;<strong>8-days</strong>&nbsp;time resolution and&nbsp;<strong>0.25 degrees grid</strong>&nbsp;resolution. It has a diverse range of seasonal fire drivers. It expands from atmospheric and climatological ones to vegetation variables, socioeconomic and the target variables related to wildfires such as burned areas, fire radiative power, and wildfire-related CO2 emissions.</p> Datacube properties <table><tbody><tr> <th> <p><strong>Feature</strong></p> </th> <th> <p><strong>Value</strong></p> </th> </tr> </tbody><tbody> <tr> <td> <p>Spatial Coverage</p> </td> <td> <p>Global</p> </td> </tr> <tr> <td> <p>Temporal Coverage</p> </td> <td> <p>2001 to 2021</p> </td> </tr> <tr> <td> <p>Spatial Resolution</p> </td> <td> <p>0.25 deg x 0.25 deg</p> </td> </tr> <tr> <td> <p>Temporal Resolution</p> </td> <td> <p>8 days</p> </td> </tr> <tr> <td> <p>Number of Variables</p> </td> <td> <p>54</p> </td> </tr> <tr> <td> <p>Tutorial Link&nbsp;</p> </td> <td> <p><a href="https://github.com/SeasFire/seasfire-datacube">https://github.com/SeasFire/seasfire-datacube</a></p> </td> </tr> </tbody> </table> <table> <tbody><tr> <th>Full name</th> <th>DataArray name</th> <th>Unit</th> <th>Contact *</th> </tr> </tbody><tbody> <tr> <th>Dataset: <a href="https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-pressure-levels?tab=overview">ERA5 Meteo Reanalysis Data</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Mean sea level pressure</th> <td>mslp</td> <td>Pa</td> <td>NOA</td> </tr> <tr> <th>Total precipitation</th> <td>tp</td> <td>m</td> <td>MPI</td> </tr> <tr> <th>Relative humidity</th> <td>rel_hum</td> <td>%</td> <td>MPI</td> </tr> <tr> <th>Vapor Pressure Deficit</th> <td>vpd</td> <td>hPa</td> <td>MPI</td> </tr> <tr> <th>Sea Surface Temperature</th> <td>sst</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Skin temperature</th> <td>skt</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Wind speed at 10 meters</th> <td>ws10</td> <td>m*s-2</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Mean</th> <td>t2m_mean</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Min</th> <td>t2m_min</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Max</th> <td>t2m_max</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Surface net solar radiation</th> <td>ssr</td> <td>MJ m-2</td> <td>MPI</td> </tr> <tr> <th>Surface solar radiation downwards</th> <td>ssrd</td> <td>MJ m-2</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 1</th> <td>swvl1</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th> <table> <tbody> <tr> <th>Volumetric soil water level 2</th> </tr> </tbody> </table> </th> <td>swvl2</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 3</th> <td>swvl3</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 4</th> <td>swvl4</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Land-Sea mask</th> <td>lsm</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>Dataset: Copernicus <p><a href="http://cds.climate.copernicus.eu/cdsapp#!/dataset/cems-fire-historical?tab=overview">CEMS</a></p> </th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Drought Code Maximum</th> <td>drought_code_max</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Drought Code Average</th> <td>drought_code_mean</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Fire Weather Index Maximum</th> <td>fwi_max</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Fire Weather Index Average</th> <td>fwi_mean</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://confluence.ecmwf.int/display/CKB/CAMS%3A+Global+Fire+Assimilation+System+%28GFAS%29+data+documentation">CAMS: Global Fire Assimilation System (GFAS)</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Carbon dioxide emissions from wildfires</th> <td>cams_co2fire</td> <td>kg/m&sup2;</td> <td>NOA</td> </tr> <tr> <th>Fire radiative power</th> <td>cams_frpfire</td> <td>W/m&sup2;</td> <td>NOA</td> </tr> <tr> <th>Dataset:&nbsp;<a href="https://climate.esa.int/en/projects/fire/data/">FireCCI - European Space Agency&rsquo;s Climate Change Initiative</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Burned Areas from Fire Climate Change Initiative (FCCI)</th> <td>fcci_ba</td> <td>ha</td> <td>NOA</td> </tr> <tr> <th>Valid mask of FCCI burned areas</th> <td>fcci_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th><br> Fraction of burnable area</th> <td>fcci_fraction_of_burnable_area</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Number of patches</th> <td>fcci_number_of_patches</td> <td>N</td> <td>NOA</td> </tr> <tr> <th>Fraction of observed area</th> <td>fcci_fraction_of_observed_area</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Dataset: Nasa MODIS <a href="https://lpdaac.usgs.gov/products/mod11c1v006/">MOD11C1</a>, <a href="https://lpdaac.usgs.gov/products/mod13c1v006/">MOD13C1</a>, <a href="https://lpdaac.usgs.gov/products/mcd15a2hv006/">MCD15A2</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Land Surface temperature at day</th> <td>lst_day</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Leaf Area Index</th> <td>lai</td> <td>m&sup2;/m&sup2;</td> <td>MPI</td> </tr> <tr> <th>Normalized Difference Vegetation Index</th> <td>ndvi</td> <td>unitless</td> <td>MPI</td> </tr> <tr> <th>Dataset: Nasa SEDAC <a href="https://sedac.ciesin.columbia.edu/data/set/gpw-v4-population-density-adjusted-to-2015-unwpp-country-totals-rev11">Gridded Population of the World (GPW), v4</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Population density</th> <td>pop_dens</td> <td>persons per square kilometers</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://www.globalfiredata.org/data.html">Global Fire Emissions Database (GFED)</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Burned Areas from GFED (large fires only)</th> <td>gfed_ba</td> <td>hectares (ha)</td> <td>MPI</td> </tr> <tr> <th>Valid mask of GFED burned areas</th> <td>gfed_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>GFED basis regions</th> <td>gfed_region</td> <td>N</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://gwis.jrc.ec.europa.eu/apps/country.profile/downloads">Global Wildfire Information System&nbsp; (GWIS)</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Burned Areas from GWIS</th> <td>gwis_ba</td> <td>ha</td> <td>NOA</td> </tr> <tr> <th>Valid mask of GWIS burned areas</th> <td>gwis_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://psl.noaa.gov/data/climateindices/list/">NOAA Climate Indices</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Arctic Oscillation Index</th> <td>oci_ao</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Western Pacific Index</th> <td>oci_wp</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Pacific North American Index</th> <td>oci_pna</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>North Atlantic Oscillation</th> <td>oci_nao</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Southern Oscillation Index</th> <td>oci_soi</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Global Mean Land/Ocean Temperature</th> <td>oci_gmsst</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Pacific Decadal Oscillation</th> <td>oci_pdo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Eastern Asia/Western Russia</th> <td>oci_ea</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>East Pacific/North Pacific Oscillation</th> <td>oci_epo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Nino 3.4 Anomaly</th> <td>oci_nino_34_anom</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Bivariate ENSO Timeseries</th> <td>oci_censo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://www.esa-landcover-cci.org/">ESA CCI</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Land Cover Class 0 - No data</th> <td>lccs_class_0</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 1 - Agriculture</th> <td>lccs_class_1</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 2 - Forest</th> <td>lccs_class_2</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 3 - Grassland</th> <td>lccs_class_3</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 4 - Wetlands</th> <td>lccs_class_4</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 5 - Settlement</th> <td>lccs_class_5</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 6 - Shrubland</th> <td>lccs_class_6</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 7 - Sparse vegetation, bare areas, permanent snow and ice</th> <td>lccs_class_7</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 8 - Water Bodies</th> <td>lccs_class_8</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://ecoregions.appspot.com/">Biomes</a></th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Dataset: Calculated</th> <td>&nbsp;</td> <td>&nbsp;</td> <td>&nbsp;</td> </tr> <tr> <th>Grid Area in square meters</th> <td>area</td> <td>m&sup2;</td> <td>NOA</td> </tr> </tbody> </table> <p>*The datacube specifications (temporal, spatial resolution, chunk size) have been set up by the Max Planck Institut (MPI) team. For the variables that the contact is MPI, Lazaro Alonso (lalonso &lt;at&gt; bgc-jena.mpg.de) has led the efforts to collect and process them. For the variables that the contact is NOA, Ilektra Karasante (ile.karasante &lt;at&gt; noa.gr) has led the efforts to collect and process them.</p>

opencc-by-4.0Jul 2022View details →
zenodo40/100

Data for the paper: Earth System Model Parameter Adjustment Using a Green's Functions Approach

<p>This dataset contains model codes and scripts used to generate the results of the paper submitted to&nbsp;Geoscientific Model Development journal</p>

opencc-by-4.0Sep 2021View details →
zenodo40/100

Pangeo-Enabled ESM Pattern Scaling (PEEPS): A customizable dataset of emulated Earth System Model output

<p>We produce a dataset that uses pattern scaling, a common method of emulating climate models.&nbsp; Our dataset is built on the Pangeo CMIP6 archive, which has the advantage that we don&#39;t need to actually download the climate model output.&nbsp; Here we demonstrate the utility of our dataset, called Pangeo-Enabled ESM Pattern Scaling (PEEPS). &nbsp;The dataset, which is encapsulated in a Jupyter notebook (and replicated in a Python file), is flexible and can be extended to multiple scenarios and multiple variables, as long as they are in the Pangeo-accessible archive.</p>

opencc-by-4.0Oct 2022View details →
zenodo40/100

Safe and Just Earth Systems Boundaries for Surface Water: Hydrologic Alteration of Environmental Flows

<p>Title: <strong>Safe and Just Earth Systems Boundaries for Surface Water: Hydrologic Alteration of Environmental Flows</strong> Author: Pamela A. Green (<a href="mailto:pg@pamelaagreen.com">pg@pamelaagreen.com</a>), Advanced Science Research Center, CUNY, New York, NY USA <a href="https://orcid.org/0009-0006-7803-8182">https://orcid.org/0009-0006-7803-8182</a></p> <p>The python Jupyter Notebook <strong>SafeJustEarthSysBnd_EstressCUNY-Griffith2022-23.ipynb</strong> and accompanying data sets represent spatial modelling for development of the safe and just surface water target for Working Group 3 of the Earth Commission for the Earth Commission Long Report and the &quot;Safe and Just Earth Systems Boundaries&quot; publication. The surface water target includes spatial modelling of the extent of global-scale hydrological alteration of environmental flows.</p> <p>All input datasets required to run the model are located under the <strong>ModelInput</strong> folder with raster data in zipped format to minimize space requirements. The code extracts the zipped files and then deletes the uncompressed files upon completion. All model outputs are located under the <strong>ModelOutput</strong> folder.</p> <p>Please reference the <strong>README.xlsx</strong> file for a full listing of the model input and output data files.</p>

opencc-by-4.0Feb 2023View details →
zenodo40/100

Files associated with Christopher Holder and Anand Gnanadesikan, How well do Earth System Models capture apparent relationships between phytoplankton biomass and environmental variables? [Version 1]

<p><strong>1. process_cmip_rf.m</strong> is a matlab script that reads a single file, generates a random forest using the parameters in the associated paper and computes permutation importance and sensitivities. Note- in order to get process_cmip_rf.m to work as written you must have the Statistics and Machine Learning toolbox installed on Matlab and download the table_modis.asc file below.&nbsp;</p> <p>Files 2-16 are tabular filew containing all datapoints used in Random Forest analysis for the NCAR CESM2 model. Columns are</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 1. Index of point, enabling a mapping back to the model grid if the resolution is known.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 2. Longitude</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 3. Latitude</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 4. Month</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 5. Iron in mol/m<sup>3</sup>.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 6. Mixed layer in m.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 7. Ammonia in mol/m<sup>3</sup></p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 8. Nitrate in mol/m<sup>3</sup>.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 9. Phytoplankton carbon in mol/m<sup>3</sup>.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 10. Phosphate in mol/m<sup>3</sup>.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 11. Shortwave radiation (net solar radiation at ocean surface in W/m<sup>2</sup>).</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 12. Silicate in mol/m<sup>3</sup>.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 13. Salinity in PSU</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 14. Temperature in C.</p> <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 15. Upwelling velocity in m/s.</p> <p>If variable is not included in the dataset, the column will be filled with zeros.</p> <p><strong>2.table_cesm2.asc:</strong> &nbsp;Data created from Danabasoglu, G., 2019, NCAR CESM model output prepared for CMIP6 CMIP esm-pi-control <a href="http://doi.org/10.22033/ESGF/CMIP6.7579">http://doi.org/10.22033/ESGF/CMIP6.7579</a>. Grid is 360x180x12</p> <p><strong>3.table_cems2_fv2.asc:</strong> Data created from Danabasoglu, G., 2019, &nbsp;NCAR CESM-FV2 model output prepared for CMIP6 CMIP pi-control&nbsp; <a href="http://doi.org/10.22033/ESGF/CMIP6.11301">http://doi.org/10.22033/ESGF/CMIP6.11301</a>. Grid is 360x180x12</p> <p><strong>4. table_cesm2_waccm.asc: </strong>Data created from Danabasoglu, G., 2019, NCAR CESM2-WACCM model output prepared for CMIP6 CMIP piControl&nbsp;<a href="http://doi.org/10.22033/ESGF/CMIP6.10094">http://doi.org/10.22033/ESGF/CMIP6.10094</a>. Grid is 360x180x12</p> <p><strong>5. table_cesm2_waccm_fv2.asc</strong>: Data created from Danabasoglu, G., 2019, NCAR CESM-WACCM-FV2 model output prepared for CMIP CMIP piControl, <a href="http://doi.org/10.22033/ESGF/CMIP6.11302">http://doi.org/10.22033/ESGF/CMIP6.11302</a>. Grid is 360x180x12</p> <p><strong>6. table_gfdl_cm4.asc</strong>: Data created from Guo, Huan; John, Jasmin G; Blanton, Chris et al,2018, NOAA-GFDL GFDL-CM4 model output piControl, &nbsp;&nbsp;<a href="http://doi.org/10.22033/ESGF/CMIP6.8666">http://doi.org/10.22033/ESGF/CMIP6.8666</a>. Grid is 360x180x12</p> <p><strong>7.table_gfdl_esm4.asc</strong> Data created from Krasting, John P.; John, Jasmin G; Blanton, Chris et al., 2018, NOAA-GFDL GFDL-ESM4 model output prepared for CMIP6 CMIP piControl, <a href="http://doi.org/10.22033/ESGF/CMIP6.8669">http://doi.org/10.22033/ESGF/CMIP6.8669</a>. Grid 360x180x12</p> <p><strong>8. table_ipsl_cm5a2_inca.asc:</strong> Data created from Boucher, Olivier; Denvil, S&eacute;bastien; Levavasseur, Guillaume et al.: 2021,&nbsp;IPSL IPSL-CM5A2-INCA model output prepared for CMIP6 CMIP piControl &nbsp;<a href="http://doi.org/10.22033/ESGF/CMIP6.13683">http://doi.org/10.22033/ESGF/CMIP6.13683</a>. Grid is 182x149x12</p> <p><strong>9.</strong> <strong>table_ipsl_cm6a_lr.asc:</strong> Data created from Boucher, Olivier; Denvil, S&eacute;bastien; Levavasseur, Guillaume et al., 2018:, IPSL IPSL-CM6A-LR model output prepared for CMIP6 CMIP piControl, <a href="http://doi.org/10.22033/ESGF/CMIP6.5251">http://doi.org/10.22033/ESGF/CMIP6.5251</a>. Grid is 362x332x12.</p> <p><strong>10</strong>. <strong>table_mpi_esm1-2-ham.asc:</strong> Neubauer, David; Ferrachat, Sylvaine; Siegenthaler-Le Drian, Colombe et al., 2019: HAMMOZ-Consortium MPI-ESM1.2-HAM model output prepared for CMIP6 CMIP piControl, <a href="http://doi.org/10.22033/ESGF/CMIP6.5037">http://doi.org/10.22033/ESGF/CMIP6.5037</a>. Grid is 256x220x12.</p> <p><strong>11</strong>. <strong>table_mpi_esm1-2-hr.asc:</strong> &nbsp;Data created from Jungclaus, Johann; Bittner, Matthias; Wieners, Karl-Hermann et al., 2019: MPI-M MPI-ESM1.2-HR model output prepared for CMIP6 CMIP piControl <a href="http://doi.org/10.22033/ESGF/CMIP6.6674">http://doi.org/10.22033/ESGF/CMIP6.6674</a>. Grid is 802x404x12.</p> <p><strong>12</strong>. <strong>table_mpi_esm1-2-lr.asc:</strong> Data created from Wieners, Karl-Hermann; Giorgetta, Marco; Jungclaus, Johann et al. 2019:MPI-M MPI-ESM1.2-LR model output prepared for CMIP6 CMIP piControl</p> <p>&nbsp;<a href="http://doi.org/10.22033/ESGF/CMIP6.6675">http://doi.org/10.22033/ESGF/CMIP6.6675</a>. Grid is 256x220x12.</p> <p><strong>13. </strong><strong>table_noresm2-lm.asc: </strong>Seland, &Oslash;yvind; Bentsen, Mats; Olivi&egrave;, Dirk Jan Leo et al.,2019 NCC NorESM2-LM model output prepared for CMIP6 CMIP piControl, <a href="http://doi.org/10.22033/ESGF/CMIP6.8217">http://doi.org/10.22033/ESGF/CMIP6.8217</a>. Grid is 360x385x12</p> <p><strong>14.</strong><strong> table_noresm2-mm.asc</strong>: Data created from Bentsen, Mats; Olivi&egrave;, Dirk Jan Leo; Seland, &Oslash;yvind et al.,2019 <strong>:</strong>&nbsp;NCC NorESM2-MM model output prepared for CMIP6 CMIP piControl, &nbsp;<a href="http://doi.org/10.22033/ESGF/CMIP6.8221">http://doi.org/10.22033/ESGF/CMIP6.8221</a>. Grid is 360x385x12.</p> <p>15-16. <strong>table_kostadinov.asc, </strong><strong>table_modis.asc</strong> Data is a merger of observational products and model output Observational climatologies for temperature, salinity, mixed layer depth, silicate, phosphate, and nitrate were downloaded from the World Ocean Atlas (WOA) 2018 (Garcia et al., 2019; Locarnini et al., 2019; Zweng et al., 2019). MODIS-POC was downloaded from oceancolor.nasa.gov. Kostadinov POC is taken from <a href="https://doi.pangaea.de/10.1594/PANGAEA.859005">https://doi.org/10.1594/PANGAEA.859005</a> Grid is 360x180x12.</p>

opencc-by-4.0May 2023View details →
zenodo40/100

The Importance of Hyperspectral Soil Albedo Information for Improving Earth System Model Projections

<p>These files are associated with the article &quot;The Importance of Hyperspectral Soil Albedo Information for Improving Earth System Model Projections&quot;.&nbsp;</p> <p>1.&nbsp;<a href="https://zenodo.org/api/files/1f7bc8d5-f9f5-4305-9c52-f6ebbf94c072/soil_hyper_albedo_RF_int.nc">soil_hyper_albedo_RF_int.nc</a>&nbsp;- hyperspectral soil albedo&nbsp;</p> <p>2.&nbsp;<a href="https://zenodo.org/api/files/1f7bc8d5-f9f5-4305-9c52-f6ebbf94c072/lai_hyper_albedo_RF_int.nc">lai_hyper_albedo_RF_int.nc</a>&nbsp;- hyperspectral surface albedo</p> <p>3.&nbsp;<a href="https://zenodo.org/api/files/1f7bc8d5-f9f5-4305-9c52-f6ebbf94c072/atmos_F2000climo_clm5sp.21_50-F2000climo_clm5sp_blue_diff_red_dir.21_50.tgz">atmos_F2000climo_clm5sp.21_50-F2000climo_clm5sp_bl&nbsp;...</a>&nbsp;- diagnostic results&nbsp;of the atmospheric model CAM between broadband and hyperspectral simulations.&nbsp;</p> <p>4.&nbsp;<a href="https://zenodo.org/api/files/1f7bc8d5-f9f5-4305-9c52-f6ebbf94c072/F2000climo_clm5sp.21_50-F2000climo_clm5sp_blue_diff_red_dir.21_50.tgz">F2000climo_clm5sp.21_50-F2000climo_clm5sp_blue_dif&nbsp;...</a>&nbsp;-&nbsp;diagnostic results&nbsp;of the land model CLM between broadband and hyperspectral simulations.&nbsp;</p>

opencc-by-4.0May 2023View details →
zenodo36/100

Insights into the operation of the solid Earth system from analysis of compiled geochemical data (Video)

<p>This is the first session video recording of the&nbsp;Goldschmidt 2020 Virtual Workshop:&nbsp;Earth Science meets Data Science -&nbsp;Services &amp; Systems, Policies &amp; Procedures, Tools &amp; Techniques for Geochemistry. Moderated by Kerstin Lehnert (Columbia University)</p>

opencc-by-4.0Jun 2020View details →
zenodo36/100

Data for: High-Speed 3D Imaging of Multiphase Systems: Applying SCAPE Microscopy to Analogue Experiments in Volcanology and Earth Sciences

<p>Microscale processes in three-phase suspensions (mixtures of&nbsp;gas, liquids, and solids) can affect the macroscale behavior of the whole suspension. To visualize these small-scale processes at high speed and in 3D, we use a recently developed&nbsp;imaging system: Swept Confocally-Aligned Planar Excitation (SCAPE) microscopy.&nbsp;This dataset contains 3D videos&nbsp; taken with SCAPE microscopy&nbsp;of&nbsp;experiments where different phases interact with each other. Each zipped folder contains&nbsp;raw data and processed data for a single experiment. &quot;Case 1&quot; experiments show CO2 bubbles growing on PMMA (acrylic) particles in sparkling water. The &quot;Case 2&quot; experiment&nbsp;shows water droplets suspended in canola oil and flowing through a porous medium made of packed PMMA particles. &quot;Case 3&quot; experiments show growth of injected air bubbles in particle suspensions (either glass beads in immersion oil, or PMMA particles in a refractive index matched liquid).</p> <p>All scaling parameters are provided in Table 1. &quot;info.txt&quot; files contain metadata for the processed hyperstacks.</p> <p>The experiments provided here are&nbsp;discussed in the following publication:<br> Oppenheimer, J.*, Patel, K.*, Lindoo, A., Hillman, E. M. C., and Lev, E.:&nbsp;High-Speed 3D Imaging of Multiphase Systems: Applying SCAPE Microscopy to Analogue Experiments in Volcanology and Earth Sciences. <em>Geochemistry, Geophysics, Geosystems.</em>&nbsp;(In press, 12/2020)</p> <p><br> &nbsp;</p>

opencc-by-4.0Sep 2020View details →
zenodo36/100

Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - Simuation results and observed data

<p>This data set contains the simulation results and observed data at NDBC buoy locations.</p> <ul> <li>wave_data.pickle <ul> <li>File containing python data objects which store: station ID data, observed data, model data, and model output dates. Requires python 3.8.</li> </ul> </li> <li>data_access.py <ul> <li>Example python script which reads in a prints the data from wave_data.pickle. It also demonstrates how to access data from the objects stored in the pickle file.</li> </ul> </li> </ul>

opencc-by-4.0Oct 2020View details →
zenodo36/100

Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - 2 degree WaveWatchIII configuration files

<p>This dataset contains the mesh and model configuration information for a WaveWatchIII run using a 2 degree structured grid.</p> <ul> <li>glo_2d.bot <ul> <li>Bottom depth file for 2 degree structured grid</li> </ul> </li> <li>glo_2d.mask <ul> <li>Mask file for 2 degree structured grid</li> </ul> </li> <li>obstructions_local.glo_2d.in <ul> <li>local obstructions file for use with UOST source term switch</li> </ul> </li> <li>obstructions_shadow.glo_2d.in <ul> <li>shadow obstructions file for use with UOST source term switch</li> </ul> </li> <li>ww3_grid.inp <ul> <li>Input file for the ww3_grid pre-processing program. This file specifies many of the model configuration settings.</li> </ul> </li> <li>ww3_shel.inp <ul> <li>Input file for the ww3_shel program.</li> </ul> </li> </ul>

opencc-by-4.0Oct 2020View details →
zenodo36/100

Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - unstructured (2 degree to 1/2 degree) WaveWatchIII configuration files

<p>This dataset contains the mesh and model configuration information for a WaveWatchIII run using a global ustructured grid.</p> <ul> <li>mesh.msh <ul> <li>Unstructured mesh file in gmsh format. The unstructured mesh has 2 degree resolution globally with 1/2 degree resolution around the U.S. coastlines. The transition in resolution occurs at 4000m depth with a 10% resolution grading.</li> </ul> </li> <li>obstructions_local.glo_unst.in <ul> <li>local obstructions file for use with UOST source term switch</li> </ul> </li> <li>obstructions_shadow.glo_unst.in <ul> <li>shadow obstructions file for use with UOST source term switch</li> </ul> </li> <li>ww3_grid.inp <ul> <li>Input file for the ww3_grid pre-processing program. This file specifies many of the model configuration settings.</li> </ul> </li> <li>ww3_shel.inp <ul> <li>Input file for the ww3_shel program.</li> </ul> </li> </ul>

opencc-by-4.0Oct 2020View details →
zenodo36/100

The Earth Surface System Scientific Data Thesaurus

<p>The Earth Surface System Scientific Data Thesaurus</p>

opencc-by-4.0Dec 2023View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record