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8,620 results for “Experimentation”
Cold air drainage transect studies at the Andrews Experimental Forest, 2002 to Present
Temperature data are being collected to investigate the effects of elevation and local topographic position on the patterns of cold air drainage and pooling in the HJ Andrews Forest, and how they vary with synoptic weather patterns. The main focus of the study is cold air drainage in the Lookout Creek area, but others sites have been added to sample temperature signatures at other locations of the forest with topographic positions that need to be better understood. Here, quality controlled 15-minute raw data and aggregated daily minimum and maximum temperatures are available from several stations along 4 separate transects or clusters with some additional single sensors also included. Several of the quality flags indicate that the data failed the test and should not be used in analysis.
Vegetative Phenology observations at the Andrews Experimental Forest, 2009 - Present
The vegetation phenology study is part of a larger effort to understand the influence of climate variability and change on trophic interactions in mountainous terrain. Phenology Core Sites were selected to capture the variation in elevation and topography across Lookout Creek watershed. Priority was given to sites with long-term air and soil temperature records (Reference stands) and previous phenology observations (Reference stands and stream gauging stations). Sixteen sites were established. At each site five individuals of from each 18 common species (if occurring within the site) from tree, shrub and herb layers were mapped and marked for observation. Weekly observations are conducted each year beginning in March or April depending on winter conditions and snowpack and continuing through June or July. Plant vegetative and reproductive phenophases are scored using a numbered system adapted to each plant species.
Forest-wide bird survey at 183 sample sites the Andrews Experimental Forest from 2009 to present
Bird occurrence data collected at 183 sample locations within the H. J. Andrews Experimental Forest (HJA) from 2009-present. We used a stratified, systematic, random design to select sample locations. We stratified across elevation, distance to road, and habitat type (plantation or mature/old-growth forest). We conduct point counts on six separate occasions from May – July, which corresponded to spring arrival and subsequent breeding period for the majority of bird species at HJA. Surveys occur between 05:15h and 10:30h and each consists of a 10-min point count where we record all birds seen or heard. The species of all birds seen and heard are recorded as well as all individual squirrels, chipmunks and pikas seen and heard. Survey-level information is also collected at each point count and includes: weather and wind conditions, stream noise, snow cover on the ground, phenology of vine maple and rhododendron. Data collection is ongoing.
Air temperature at core phenology sites and additional bird monitoring sites in the Andrews Experimental Forest, 2009 to present
The H.J Andrews phenology study air temperature network includes 16 core phenology sites, 40 core bird sites and 128 auxiliary bird sites. This study examines air temperatures at multiple sites within the Andrews Experimental Forest. Air temperatures were recorded 1.5 m above ground at 184 sites distributed on an 800-m incomplete grid throughout much of the Andrews Forest. Data were collected using automated sensors starting in June of 2009 at 56 sites and in June 2011 128 additional sensors were added. These data document the complex spatial and temporal patterns of air temperature variation within the Andrews Forest, which is governed by multiple processes including inversions, regional air mixing, cold air drainage and pooling, and the effects of vegetation on temperature extremes. The data entities provided indicate various methods of data quality checking over time.
Solute dynamics in the hyporheic zone of a headwater stream in Watershed 1 at the Andrews Experimental Forest, 2016-2018
This project examined the interactions between stream water and subsurface sediment to quantify how these interactions influenced organic C respiration and dissolved inorganic C (DIC) production in the hyporheic zone of a high-gradient headwater mountain stream draining a forested catchment at the H. J. Andrews Experimental Forest, Oregon, USA. The study used six 2-m long hyporheic mesocosms which were packed with streambed sediment in the spring of 2016. The mesocosms are located at the Watershed 1 (WS1) stream gage and stream water from WS1 has been pumped through the mesocosms continuously since they were first packed through the end of (and beyond) this study in autumn of 2018. The mesocosms were designed around 1-m long 20-cm diameter aluminum pipe segments with sample ports located each meter along the flowpath through each mesocosm – thus sampling at the inlet, at 1 m, and at the outlet which represents the full 2-m long flow path. Sampling was conducted on seven dates between Oct 23 2016 and Aug 27 2018. On two of these dates, only background samples were collected. On the remaining 5 dates, sampling was designed around continuous-injection tracer experiments using both a conservative tracer (salt) and a reactive tracer (various dissolved organic substrates). For background sampling events, samples were generally only collected once. The tracer experiments involved 4 discreet sampling times: 1. pre-injection (under background conditions); 2. early plateau; 3. late plateau, and 4. post-injection (and in one injection experiment, a 5th sample at late-post-injection time). For each round of samples, the mesocosm water temperature, pH, EC, and DO were measured with sensors in a small flow-through cell. Then water samples were collected for laboratory analysis for both DOC and DIC. The median travel time of water through each pipe segment of the 2-m mesocosms was also calculated from the conservative tracer break-through curves.
Meteorological data from the Discovery Tree at the Andrews Experimental Forest, 2015 to present
The upper-canopy of forests is known to experience a very different leaf wetness than the rest of the forest: it is often simultaneously brighter, hotter, windier, and drier. The upper canopy also contains most of the leaf area, and because it absorbs most of the solar radiation, it accounts for the great majority of carbon and water exchanges in most forests. Critically, this is also the zone where most climate variations and stress likely manifest. The upper canopy is also the region of the forest that is sampled by satellite imagery. Intensive canopy microclimate monitoring provides connections to satellite-based imagery at varying temporal and spatial scales in order to scale across the Andrews landscape and improves our understanding of forest function and its response to climate change. A 50 meter old growth tree, called the Discovery Tree, was instrumented with various sensors. A thermal infrared camera was installed in March 2014, which collects surface temperatures of the old-growth forest and the adjacent secondary-growth forest. Since then, the scope of information being acquired in real-time has increased to include temperature, leaf wetness, relative humidity, soil temperature, soil moisture, wind direction and speed. This suite of data serves as a glimpse into the canopy and soil processes we are unaware of when our feet are planted firmly on the ground. These measurements complement and leverage ongoing, long-term climate measurements collected in the sub-canopy and at the climate stations located across the Andrews forest, and potentially link with Lidar data on canopy structure and planned soil moisture measurements. Canopy thermal imaging and microclimate measurements have been established for ecophysiological applications such as monitoring the response of forest tree canopies to climate variations, including heat and drought stress.
Precipitation measurements from historic and current standard, storage and recording rain gauges at the Andrews Experimental Forest, 1951 to present
Andrews Forest precipitation has been measured continuously using various rain gage types since 1951. Most of these rain gages are standard (non-recording) gages with 7.5 or 8 inch orifices or large capacity storage gages intended for sites with limited access collected irregularly over longer intervals. Recording rain gages have also been established to collect higher temporal resolutions (e.g., 5 minute or 15 minute) and also used as a means of parsing (“prorating”) these periodic interval measurements from these standard and storage gages into daily totals. This data set includes an inventory of all rain gages that have operated within the Andrews as well as one site in the nearby Wildcat RNA and one in the town of Blue River. The inventory includes information regarding the date range of operation, gage location, type of gage, the rain network within which it was established, general availability of data and descriptive notes. A second table includes all of the raw measurement data for these non-recording gages over every interval where data were taken, and additionally includes the corresponding recording gage and its measurement total used to prorate data into a daily record. A third table includes the prorated daily data for all of these standard and storage gages as well as the true daily totals for two recording rain gages. A fourth table includes high temporal resolution for one early recording gage at Forks and the Mack Creek recording gage. Note that while precipitation data associated with the 6 benchmark stations are included in this rain gage inventory (Entity 1), the daily and high temporal resolution data for these sites were available through a separate meteorological data set, database code MS001, until 2025. In 2025, the benchmark station data was migrated here and will be combined with the Forks and Mack Creek data.
Water stable isotopes for streams and precipitation samples in the HJ Andrews Experimental Forest, 2014-2023
Water samples have been collected for analysis of water stable isotopes (O18/16 and H2/H1) at different locations in the HJ Andrews Experimental Forest and over different periods since 2014 in the HJ Andrews Experimental Forest. The database includes: 1) grab samples collected over the stream network of the Andrews Forest on multiple sampling campaigns during various flow conditions. In each of the campaigns, the samples were collected at approximately 50–100-meter intervals in 1st–5th order streams across the network; 2) water samples collected in the Andrews Forest every 1–3 weeks between 2014 and 2018 in streams (Lookout Creek, Mack Creek, McRae Creek, WS01, WS02, WS07, and WS08) and bulk precipitation from benchmark meteorological stations (PRIMET, MACK, and H15MET) between 2014 and 2023; 3) stream and precipitation samples collected in the Andrews Forest at high temporal resolution during discrete storm events at Mack Creek in 2015; and 4) weekly grab samples from Lookout Creek and selected tributaries.
Above ground plant biomass and leaf area of moist acidic tussock tundra 1981 experimental site (MAT81), Arctic LTER, Toolik Lake, Alaska.1995.
Above ground plant biomass and leaf area were measured in a tussock tundra experimental site. The plots were set up in 1981 and have been harvested in previous years (See Shaver and Chapin Ecological Monographs, 61, 1991 pp.1-31).
Numbers of Eriophorum vaginatum inflorescences, both unclipped and clipped by small mammals, were counted in experimental small mammal exclosure plots, Arct LTER moist acidic tussock site, Toolik Field Station, Alaska, 1997 to 2015
Numbers of Eriophorum vaginatum inflorescences, both unclipped and clipped by small mammals, were counted in experimental plots. The plots are setup in moist acidic tussock tundra near Toolik Field Station, Alaska ((8 degrees 37' 27" N, 149 degrees 36' 27"W) and include fenced exclosures in both fertilized and unfertilized tundra.
Experimental soil metabolism responses to oxygen availability and carbon pulses
Soil metabolism rates were measured in experimental flow-through reactors (FTRs) in order to assess responses to oxygen availability (i.e., redox conditions) and pulsed inputs of bioavailable carbon. The oxygen and carbon manipulations were meant to simulate patchy conditions in the rhizosphere of Spartina alterniflora marshes. The experiment was conducted over 97 days. During the first 84 days, pulses were applied weekly and metabolic responses were measured 1 and 5 days later. After the final carbon pulse, metabolism responses were followed for another 13 days in order to assess starvation responses. We used soils from Airport marsh on Sapelo Island.
Hubbard Brook Experimental Forest: Total Daily Precipitation by Watershed, 1956 - present
From 1956 to 2014, watershed precipitation was estimated using the Thiessen Means weighting method. Daily watershed precipitation values were a weighted average of daily precipitation from standard gauges in or near the watershed. The weighting factor for each gauge was the fraction of the watershed area nearest that gauge. Beginning in 2015, a similar system was implemented using the 10 remaining rain gauges, however Inverse Distance Weighting was used to estimate the weighting of each gauge instead of the Theissen polygon approach. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Weekly Snow and Frost Measurements, 1955 - present
Snow and frost measurements have been collected approximately weekly during the winter season at the Hubbard Brook Experimental Forest using transects underneath the forest canopy adjacent to the established network of standard rain gages from 1956 to the present. Maximum snow depth, snow water content, frost occurrence, and frost depth data are recorded at points along a transect known as a snow course, which includes 10 points spaced at 2-m intervals within a designated 0.25 ha area. Data from one course are averaged for each collection date. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: 15-minute Precipitation by Watershed, 2017 - present
From 2011 to 2017, ten electronic weighing rain gauges were progressively implemented at the Hubbard Brook Experimental Forest to measure precipitation at 15-minute intervals. 15-minute resolution watershed precipitation values for nine research watersheds are calculated as a weighted average of precipitation using Inverse Distance Weighting. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
NRCS-USFS Soil Moisture Measurements - Hubbard Brook Experimental Forest, 2023-2025
This dataset consists of soil moisture (volumetric water content and water potential), temperature, and electrical conductivity measurements at multiple depths within 12 soil pedons distributed across Watersheds 3, 6, and 9 at Hubbard Brook Experimental Forest from July 2023 to June 2025. This work is a part of the Forest Soil Moisture Monitoring Network (FSMMN), which is an interagency partnership between the U.S. Forest Service and the Natural Resources Conservation Service (NRCS) to install, monitor and generate long-term soil moisture datasets across multiple forested watersheds in the U.S. Dataset contributors: Hubbard Brook site selection and project planning was conducted by Amanda Pennino (NRCS), Scott Bailey (Virginia Tech) and Mark Green (Case Western). Site visits, data downloading, and logger maintenance was by Lucy Zendzian (NRCS), Paul Gadecki (NRCS), and Jack Ferrara (NRCS). The dataset was curated by Emily Piche (USFS, ORISE) and Amanda Pennino (NRCS). Overall partnership initiation and project management was by Stephanie Connolly (USFS) and Skye Wills (NRCS).
Landscape-Scale Forest Dynamics in the Luquillo Experimental Forest in Puerto Rico 1936-1989
This study examined landscape-scale forest dynamics in the Luquillo Experimental Forest (Puerto Rico). The analysis was based on vegetation maps created from aerial photographs taken in 1936 and 1989. For details on methods and results, please see the published paper (Foster, D. R., M. Fluet and E. R. Boose. 1999. Human or natural disturbance: landscape-scale dynamics of the tropical forests of Puerto Rico. Ecological Applications 9: 555-572). The Abstract from the paper is reproduced below. "Increasingly ecologists are recognizing that human disturbance has played an important role in tropical forest history and that many assumptions concerning the relative importance of natural processes warrant re-examination. To assess the historical role of broad-scale human versus natural disturbance on an intensively studied tropical forest we undertook a landscape-level analysis of forest dynamics in the Luquillo Experimental Forest (LEF; 10,871 ha) in eastern Puerto Rico. Using aerial photographs (1936 and 1989), GIS, a model of topographic exposure to hurricane winds, and historical data, we sought to: (1) document historical changes in extent, cover and type of forest vegetation, (2) evaluate the distribution of land-use and hurricane impacts, (3) assess the contributions of these processes in controlling current vegetation patterns, and (4) relate these results to ongoing ecological, conservation and natural resource discussions. "With over 1000 m of relief in the LEF, the broad vegetation zones of Tabonuco (below 600 m a.s.l.), Colorado (600-900 m), Dwarf (above 900 m), and Palm forest are determined by environmental gradients. However, over the past 60-100 years forest extent, cover, and type have been transformed: in 1936, 40% of the LEF was unforested or secondary forest and less than 50% had continuous canopy (more than 80% cover); in 1989, less than 97% was continuous forest. Secondary forest and agricultural lands in 1936 were replaced largely by Tabonuco and Colo
Physical soil characteristics, microbial community composition, extracellular enzymatic activity, biologically based phosphorus (BBP) pools, and available phosphorus from two soil depths, four microhabitats, and four landforms at the Jornada Experimental Range, 2021.
This dataset contains physical soil characteristics, PLFA based microbial community composition, extracellular enzymatic activity, nitrate and ammonium activity, and phosphorus availability in various phosphorus pools (Biologically Based Phosphorus, potassium sulfate, Olsen-P). Soils were collected from two depths (0-2cm, 2-30 cm), four microhabitats (grass, shrub, biocrust, interspace), and four landforms (alluvial flat, alluvial fan remnant, erosional scarplet, fan piedmont – see coordinates) within the Jornada Experimental Range in July 2021 to answer questions about how these variables change across these spatial scales in drylands. This project was a collaboration between researchers at New Mexico State University and The University of Texas at El Paso as part of the Drylands Critical Zone Thematic Cluster within the Critical Zone Network. This dataset is complete.
PsPM-FER02: PSR, SCR, ECG and respiration measurements from a 3 conditions x 3 experimental sessions repeated-measures design to assess the return of fear
<p>This dataset includes pupil size response (PSR), skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements. Also included are CS and US information, keypress responses, keypress response times, key correctness and shock expectancy ratings at the end of the experiment for 74 healthy unmedicated participants (33 males and 41 females aged 24.2+/-3.9 years) participating in a 3 conditions x 3 experimental sessions repeated-measures design to assess the return of fear. CS were colored triangles (yellow/red/blue). US consisted of a 500 ms train of 250 square pulses with individual pulse width of 0.2 ms. SOA between the CS onset and US was 3.5 s. CS and US co-terminated. The ITI was randomly determined as discrete values between 7-11 seconds (mean 9 seconds).</p>
Perry et al. (2025) Data Package: Effects of diluted bitumen and remediation methods on lower trophic levels within boreal lake enclosures. Data were collected during 2019 at the IISD Experimental Lakes Area in Northwestern Ontario.
This data package corresponds to a research study by Perry et al. (2025) titled "The effects of diluted bitumen, the shoreline cleaner Corexit EC9580A, and bio-stimulation on the lower food web of a boreal lake, with a focus on natural phytoplankton communities." The study examines the effect of controlled spills of diluted bitumen and two remediation methods on lower trophic levels (phytoplankton, periphyton, zooplankton). The study was undertaken within shoreline enclosures within Lake 260 at the IISD Experimental Lakes Area during 2019. In addition to primary oil recovery using sorbent pads, the two secondary remediation methods: 1) enhanced monitoring natural recovery (eMNR) that included the biostimulation of microbial communities via a slow release nutrient fertilizer, and 2) a shoreline washing agent (SWA or SCA; Corexit 9580) used to increase oil removal from affected shorelines. This data package includes the response of perphyton and zooplankton.
Data associated with the FLooded Upland Dynamics EXperiment (FLUDEX), conducted at the IISD Experimental Lakes Area 1997 to 2003, investigating reservoir flooding impacts on ecosystems, particularly the release of mercury and greenhouse gases.
The data included in this repository were collected over the course of the FLooded Upland Dynamics Experiment (FLUDEX) conducted at the IISD Experimental Lakes Area (IISD-ELA) from 1997 to 2003. A plethora of data was collected over five years of flooding three upland reservoir sites, in order to examine the relationship between the amount of flooded, and thus decomposed, terrestrial organic matter and the production of methylmercury (MeHg), total mercury (THg), and greenhouse gases (GHGs) in the reservoirs. Findings from this experiment suggest that the amount of organic carbon stored in a flooded site does not directly influence the amount of THg, MeHg, and GHGs produced, but it does affect the persistence of mercury in the reservoir and food web. This version of the repository contains data collected on water chemistry, benthic invertebrate (chironomid) emergence, mercury and methylmercury concentrations in the water and food web, stable isotopes of carbon and nitrogen in emerging insects and zooplankton, and abundance and biomass of zooplankton, phytoplankton, and bacteria. This data package contains only some of the data from the FLUDEX project. IISD-ELA hopes to add more data in subsequent versions.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.