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66
datasets available to search
ShareScore release 0.9.0
Dataset results
66 results for “Functional microbiome”
Functional Dyspepsia Microbiome Study
ClinicalTrials.gov study NCT02340312. IPD Sharing: Not stated. Countries: 1. Publications: 51.
Intervention Study Focused on the Intestinal Microbiome to Evaluate the Impact of a Wild Thyme Extract (Thymus Serpyllum) Extract With Anti-inflammatory and Metabolic Properties Against Functional Gas
ClinicalTrials.gov study NCT06639126. IPD Sharing: NO. Countries: 1. Publications: 4.
PPI and Microbiome in Healthy Volunteers and Functional Dyspepsia
ClinicalTrials.gov study NCT03545243. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Effect of Gastrectomy on Gut Microbiome and Cognitive Function
ClinicalTrials.gov study NCT06186089. IPD Sharing: NO. Countries: 1. Publications: 12.
The Effect of Micronutrient Supplementation on Gut Microbiome Composition and Function
ClinicalTrials.gov study NCT05371704. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Scale dependence in functional equivalence and difference in the soil microbiome
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Data from: Assembly and ecological function of the root microbiome across angiosperm plant species
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Data from: The Sphagnum microbiome supports greatly bog ecosystem functioning under extreme conditions
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Survey of metaproteomics software tools for functional microbiome analysis
<p>The dataset contains files used as input for running functional tools, and it also contains the output files generated by them. These output files were then used for data analysis to comparing them.</p>
The diversity and function of sourdough starter microbiomes
<p>Humans have relied on sourdough starter microbial communities to make leavened bread for thousands of years, but only a small fraction of global sourdough biodiversity has been characterized. Working with a citizen-scientist network of bread bakers, we determined the microbial diversity of 500 sourdough starters from four continents. In sharp contrast with widespread assumptions, we found little evidence for biogeographic patterns in starter communities. Strong co-occurrence patterns observed in situ and recreated in vitro demonstrate that microbial interactions shape sourdough community structure. Variation in dough rise rates and aromas were largely explained by acetic acid bacteria, a mostly overlooked group of sourdough microbes. Our study reveals the full extent of microbial diversity in an ancient fermented food across diverse cultural and geographic backgrounds.</p>
Data from: Loss of murine Paneth cell function alters the immature intestinal microbiome and mimics changes seen in neonatal necrotizing enterocolitis
Necrotizing enterocolitis (NEC) remains the leading cause of gastrointestinal morbidity and mortality in premature infants. Human and animal studies suggest a role for Paneth cells in NEC pathogenesis. Paneth cells play critical roles in host-microbial interactions and epithelial homeostasis. The ramifications of eliminating Paneth cell function on the immature host-microbial axis remains incomplete. Paneth cell function was depleted in the immature murine intestine using chemical and genetic models, which resulted in intestinal injury consistent with NEC. Paneth cell depletion was confirmed using histology, electron microscopy, flow cytometry, and real time RT-PCR. Cecal samples were analyzed at various time points to determine the effects of Paneth cell depletion with and without Klebsiella gavage on the microbiome. Deficient Paneth cell function induced significant compositional changes in the cecal microbiome with a significant increase in Enterobacteriacae species. Further, the bloom of Enterobacteriaceae species that occurs is phenotypically similar to what is seen in human NEC. This further strengthens our understanding of the importance of Paneth cells to intestinal homeostasis in the immature intestine.
Effect of Walnuts on Cognitive Function and Gut Microbiome in Older Adults
ClinicalTrials.gov study NCT06942351. IPD Sharing: NO. Countries: 1. Publications: 0.
Role of the Gut Microbiome on Lean Mass and Physical Function in Older Adults
ClinicalTrials.gov study NCT02811445. IPD Sharing: NO. Countries: 1. Publications: 0.
The diversity and function of sourdough starter microbiomes
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Data from: Loss of murine Paneth cell function alters the immature intestinal microbiome and mimics changes seen in neonatal necrotizing enterocolitis
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HuMiChip2 for Strain Level Identification and Functional Profiling of Human Microbiomes
GEO Series GSE86162. human metagenome. 18 samples. Type: Other.
Epsilon Toxin-Producing Clostridium perfringens within the MS Gut Microbiome and Epsilon Toxin Function on Immune Privilege
GEO Series GSE223137. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Early Modulation of the Gut Microbiome by Female Sex Hormones Alters Amyloid Pathology and Microglial Function
GEO Series GSE245831. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The gut microbiome regulates memory function.
GEO Series GSE150091. Rattus norvegicus. 34 samples. Type: Expression profiling by high throughput sequencing.
Impact of Gut Microbiome on Metabolic and Bowel Function During the First Year After Spinal Cord Injury
ClinicalTrials.gov study NCT05670288. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.