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49 results for “Fusarium oxysporum”
Influence of epigenetic modifications on gene expression in Fusarium oxysporum
GEO Series GSE253117. Fusarium graminearum; Fusarium oxysporum f. sp. lycopersici. 49 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Vanilla planifolia Jacks., transcriptomic response towards Fusarium oxysporum f. sp. vanillae infection
GEO Series GSE134155. Vanilla planifolia. 12 samples. Type: Expression profiling by high throughput sequencing.
The susceptibility of sea-island cotton recombinant inbred lines to Fusarium oxysporum f. sp. vasinfectum infection is characterized by altered expression of long noncoding RNAs
GEO Series GSE95288. Gossypium barbadense. 12 samples. Type: Expression profiling by high throughput sequencing.
Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
GEO Series GSE71393. Solanum lycopersicum. 8 samples. Type: Expression profiling by array.
Genome-wide transcriptional Responses to Fusarium oxysporum and Tomato mosaic virus in Tomato
GEO Series GSE52336. Solanum lycopersicum. 8 samples. Type: Expression profiling by array.
Cotton (Gossypium barbadense) root transcriptional response to Fusarium oxysporum f.sp. vasinfectum (FOV) race 4 (FOV4) infection
GEO Series GSE233711. Gossypium barbadense. 18 samples. Type: Expression profiling by high throughput sequencing.
Genome wide expression responses of Fusarium oxysporum wt and ΔhapX mutant to iron depleted and iron replete conditions.
GEO Series GSE39325. Fusarium oxysporum. 12 samples. Type: Expression profiling by array.
Comparative transcriptomic analysis of races 1, 2 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles
GEO Series GSE159726. Fusarium oxysporum f. sp. pisi. 48 samples. Type: Expression profiling by high throughput sequencing.
microRNA-like RNAs exploring and expression profile in plant pathogenic fungus Fusarium oxysporum f. sp. niveum
GEO Series GSE84384. Fusarium oxysporum f. sp. niveum. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A pair of effectors in a conditionally dispensable chromosome of Fusarium oxysporum suppresses host-specific immunity
GEO Series GSE157823. Brassica oleracea; Fusarium oxysporum; Arabidopsis thaliana. 25 samples. Type: Expression profiling by high throughput sequencing.
RNAseq analysis of the effects of light and the carS mutation in Fusarium fujikuroi and Fusarium oxysporum
GEO Series GSE107342. Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici. 20 samples. Type: Expression profiling by high throughput sequencing.
Expression profiling of the Arabidopsis Mediator complex mutant pft1/med25 and wildtype infected with Fusarium oxysporum
GEO Series GSE15236. Arabidopsis thaliana. 16 samples. Type: Expression profiling by array.
Genome Sequencing and Comparative Transcriptomics of Race1 and Race4 of Banana pathogen: Fusarium oxysporum f.sp. Cubense
GEO Series GSE40581. Fusarium oxysporum f. sp. cubense. 4 samples. Type: Expression profiling by high throughput sequencing.
Effect of Mac1 deletion on copper homoestasis and virulence in Fusarium oxysporum f. sp. lycopersici [RNA-seq]
GEO Series GSE243247. Fusarium oxysporum f. sp. lycopersici 4287. 24 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis reveals the response mechanism of Frl-mediated resistance to Fusarium oxysporum f. sp. radicis-lycopersici (FORL) infection in tomato
GEO Series GSE171219. Solanum lycopersicum. 18 samples. Type: Expression profiling by high throughput sequencing.
Expression data from Capsicum annuum inoculated with Fusarium oxysporum Fo47
GEO Series GSE49432. Capsicum annuum; Solanum lycopersicum. 6 samples. Type: Expression profiling by array.
Role of Mac1 in gene regulation under copper limiting conditions in Fusarium oxysporum [ChIP-seq]
GEO Series GSE244102. Fusarium oxysporum f. sp. lycopersici 4287. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station
Two isolates of Fusarium oxysporum, ISS-F3 and ISS-F4, were cultured from the dining table on the International Space Station (ISS). Genomic analyses using EF-1α sequences, presence/absence of effector proteins, k-mer comparisons, and single nucleotide polymorphisms indicate that these two strains are genomically different from 65 known sequenced strains. Functional analysis revealed that ISS-F3/F4 had higher relative abundances of polyketide synthase domains than a non-plant-pathogenic soil isolate, used for biocontrol properties (Fo47), and a clinical isolate (FOSC-3a). Putative secondary metabolite analysis indicates that ISS-F3/F4 may produce yet-unreported polyketides and nonribosomal peptides. While genomic analysis showed that these ISS strains are unlikely to be plant pathogens, a virulence assay using an immunocompromised Caenorhabditis elegans model of fusariosis revealed that they were virulent and may represent opportunistic pathogens in animals, including humans. However, its effects on the health of immunocompromised humans warrant further study.
Draft Genome Sequences of Two Fusarium oxysporum Isolates Cultured from Infected Zinnia hybrida Plants Grown on the International Space Station
Draft genome sequences of two Fusarium oxysporum isolates cultured from infected Zinnia hybrida plants grown on the International Space Station
Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by Race 1 and Race 4 of Fusarium oxysporum f. sp. Cubense
GEO Series GSE48563. Musa acuminata. 9 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.