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opencc-by-4.0Jun 2022View details →

A Repackaged Taxonomic Backbone of Global Biodiversity Information Facility (GBIF) - 2021-11-26

A Repackaged Taxonomic Backbone of Global Biodiversity Information Facility (GBIF) --- Global Biodiversity Information Facility (GBIF) facilitates access to billions of biodiversity data records. These records include detailed accounts of life on earth. To help records of specific life forms, GBIF provides a taxonomic backbone [1,2]. This backbone contains a long list of names used to describe species and associated hierarchies and taxonomic publications. These lists are sourced from datasets around the world. At time of writing (18 Aug 2021), GBIF publishes a simplified version of their taxonomic backbone at [https://hosted-datasets.gbif.org/datasets/backbone/](https://hosted-datasets.gbif.org/datasets/backbone/) [1]. This repository provides script to pre-process https://hosted-datasets.gbif.org/datasets/backbone/backbone-current-simple.txt.gz to help facilitate access and improve performance of the creation of search indexes. Pre-process steps currently include: 1. reducing amount of columns 2. reverse sort by id 3. reverse sort by name Contents --- README:     this file repackage-gbif-backbone.sh:     script used to repackage GBIF Simple Backbone. backbone-current-simple.txt.gz:     original GBIF backbone archive gbif-backbone-by-name.tsv.gz:     two columns, gzipped, tab-separated text file with columns name, and id     reverse sorted by name gbif-backbone-by-name.tsv.sha256:     sha256 hash of the uncompressed gbif-backbone-by-name.tsv.gz gbif-backbone-by-id.tsv.gz:     20 columns, gzipped, tab-separated text file with first 20 columns of repackaged GBIF backbone file     reverse sorted by id gbif-backbone-by-id.tsv.sha256:     sha256 hash of the uncompressed gbif-backbone-by-id.tsv.gz References --- [1] Simplied GBIF Backbone Taxonomy. Accessed at https://hosted-datasets.gbif.org/datasets/backbone/ on 2021-08-18. [2] GBIF Secretariat (2021). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.org on 2021-08-18. Hash URIs --- This publication includes the following content uris: repackage-gbif-backbone.sh:     hash://sha256/073ac5490252c4ccbbd4f516d391faebe62c9fde9e4d75ae870441a86c382527 backbone-current-simple.txt.gz:     hash://sha256/15cbfc038e666356af27248935f79e408ed51fd8c0b49a668fed8dbf72591502     hash://sha256/1f78788a4a046dcbcf1e36c7658a1e333ca60e7586a372238d58b938d91fde51 (uncompressed) gbif-backbone-by-name.tsv.gz:     hash://sha256/6e11ae9961a9498b60d4bdeb489d6c1f5da9c2732310edaecdc79bd287b79ef4     hash://sha256/934ce05dbd067abb209168bd1d9389f122d051e1b7374b5d757a12e86f8da9a5 (uncompressed) gbif-backbone-by-id.tsv.gz:     hash://sha256/c434c7d3622421b17dadcd119391b32a66edee59f484d4cab924d92fd17713e2     hash://sha256/e2cf9116a21966315b0482d391052223e21c8e916ae0c097dfd37bed017b815b (uncompressed)

opencc-by-4.0Jun 2024View details →

РИС. 5. Распространение Mytilisepta virgata (Wiegmann, 1837) на основе литературных данных и GBIF (https://www. gbif.org/). Стрелка покаЗывает место находки в России. in Первая находка Mytilisepta virgata (Bivalvia: Mytilidae) в российских водах

РИС. 5. Распространение Mytilisepta virgata (Wiegmann, 1837) на основе литературных данных и GBIF (https://www. gbif.org/). Стрелка покаЗывает место находки в России.

North American Apidae Occurrence Data Filtered from GBIF

This is a filtered dataset from GBIF including all Apidae observations identified to the species level in the North American range. Data was downloaded using rgbif::occ_download and accessed from R via rgbif (https://github.com/ropensci/rgbif) on 2024-11-10. The original unfiltered GBIF occurrences can be download at https://doi.org/10.15468/dl.5k8kue, and https://api.gbif.org/v1/occurrence/download/request/0005473-241107131044228.zip. The data is filtered to have coordinates in North America, no geospatial issues, no duplicates across species and coordinates, no coordinate uncertainty greater than 1 kilometer, and no occurrences lying within 1km of a college or university. This dataset is incomplete as it does not include ALL observations that occur in North American countries as observations lacking a continent field of "north_america" in GBIF are not included. The data was uploaded to Zenodo after filtering with the following DOI: 10.5281/zenodo.14062444.

North American Papilionidae Occurrence Data Filtered from GBIF

This is a filtered dataset from GBIF including all Papilionidae observations identified to the species level in the North American range. Data was downloaded using rgbif::occ_download and accessed from R via rgbif (https://github.com/ropensci/rgbif) on 2024-11-10. The original unfiltered GBIF occurrences can be download at https://doi.org/10.15468/dl.94su9e, and https://api.gbif.org/v1/occurrence/download/request/0005495-241107131044228.zip. The data is filtered to have coordinates in North America, no geospatial issues, no duplicates across species and coordinates, no coordinate uncertainty greater than 1 kilometer, and no occurrences lying within 1km of a college or university. This dataset is incomplete as it does not include ALL observations that occur in North American countries as observations lacking a continent field of "north_america" in GBIF are not included. The data was uploaded to Zenodo after filtering with the following DOI: 10.5281/zenodo.14062603.

North American Trochilidae Occurrence Data Filtered from GBIF

This is a filtered dataset from GBIF including all Trochilidae observations identified to the species level in the North American range. Data was downloaded using rgbif::occ_download and accessed from R via rgbif (https://github.com/ropensci/rgbif) on 2024-11-10. The original unfiltered GBIF occurrences can be download at https://doi.org/10.15468/dl.ekuew6, and https://api.gbif.org/v1/occurrence/download/request/0005475-241107131044228.zip. The data is filtered to have coordinates in North America, no geospatial issues, no duplicates across species and coordinates, no coordinate uncertainty greater than 1 kilometer, and no occurrences lying within 1km of a college or university. This dataset is incomplete as it does not include ALL observations that occur in North American countries as observations lacking a continent field of "north_america" in GBIF are not included. The data was uploaded to Zenodo after filtering with the following DOI: 10.5281/zenodo.14062667.

North American Bombyliidae Occurrence Data Filtered from GBIF

This is a filtered dataset from GBIF including all Bombyliidae observations identified to the species level in the North American range. Data was downloaded using rgbif::occ_download and accessed from R via rgbif (https://github.com/ropensci/rgbif) on 2024-11-10. The original unfiltered GBIF occurrences can be download at https://doi.org/10.15468/dl.p2tn6p, and https://api.gbif.org/v1/occurrence/download/request/0005494-241107131044228.zip. The data is filtered to have coordinates in North America, no geospatial issues, no duplicates across species and coordinates, no coordinate uncertainty greater than 1 kilometer, and no occurrences lying within 1km of a college or university. This dataset is incomplete as it does not include ALL observations that occur in North American countries as observations lacking a continent field of "north_america" in GBIF are not included. The data was uploaded to Zenodo after filtering with the following DOI: 10.5281/zenodo.14062514.

opencc-by-4.0Dec 2022View details →

Dataset derived from GBIF data about Insecta.

Dataset derived from GBIF data about Insecta.  This dataset has been used to obtain the results presented in the paper "GBIF falls shorts of providing a representative picture of the global distribution of insects", submited to journal Systematic Entomology   The dataset has been registered as derived dataset on GBIF, and the citation is: Derived dataset GBIF.org (22 December 2022) Filtered export of GBIF occurrence data https://doi.org/10.15468/dd.5bhqp3

opencc-zeroFeb 2023View details →

A biodiversity dataset graph: GBIF, iDigBio, BioCASe hash://sha256/450deb8ed9092ac9b2f0f31d3dcf4e2b9be003c460df63dd6463d252bff37b55 hash://md5/898a9c02bedccaea5434ee4c6d64b7a2

A biodiversity dataset graph: GBIF, iDigBio, BioCASe hash://sha256/450deb8ed9092ac9b2f0f31d3dcf4e2b9be003c460df63dd6463d252bff37b55 hash://md5/898a9c02bedccaea5434ee4c6d64b7a2 The intended use of this archive is to facilitate meta-analysis of the Global Biodiversity Information Facility, Integrated Digitized Biocollections, Biological Collection Access Service (GBIF, iDigBio, BioCASe). GBIF, iDigBio and BioCASe help provide access to biological data collections. This dataset provides versioned provenance logs of snapshots of the GBIF, iDigBio, BioCASe network as tracked by Preston [2] between 2018-09-03 and 2023-02-02 using "preston update -u https://gbif.org,https://idigbio.org,http://biocase.org". This publication contains two types of files: index files and provenance logs. Associated data files are hosted elsewhere for pragmatic reasons. Index files provide a way to link provenance files in time to establish a versioning mechanism. Provenance logs describe how, when, what and where the GBIF, iDigBio, BioCASe content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 .   To retrieve and verify the downloaded GBIF, iDigBio, BioCASe biodiversity dataset graph, use the preston[2] command-line tool to "clone" this dataset using: $ java -jar preston.jar ls --remote https://zenodo.org/record/7651831/files > /dev/null Optionally, you can retrieve all associated data (>500GB) files using: $ java -jar preston.jar clone https://zenodo.org/record/7651831/files --remote https://zenodo.org/record/7651831/files,https://linker.bio,https://archive.org/download/biodiversity-dataset-archives/data.zip/data/ Please note https://archive.org/download/biodiversity-dataset-archives/data.zip/data/ and https://linker.bio are Preston remotes that provided access to GBIF, iDigBio, BioCASe data files at time of writing (17 Feb 2023). These remotes can replaced with any other Preston remote(s) if needed. This may take a while depending on network speed and hardware constraints. See also https://archive.org/details/biodiversity-dataset-archives . After that, verify the index of the archive by reproducing the following provenance log history: $ java -jar preston.jar history <hash://sha256/450deb8ed9092ac9b2f0f31d3dcf4e2b9be003c460df63dd6463d252bff37b55> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1621a777e4a7442e9864424820c5f825d9cf1c65599cbfbbda039384f1b74ada> . <hash://sha256/1621a777e4a7442e9864424820c5f825d9cf1c65599cbfbbda039384f1b74ada> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/b1c11d9231768def925b9d076c1c4b711a727326ad99e62982aa4ede288e5aa2> . <hash://sha256/b1c11d9231768def925b9d076c1c4b711a727326ad99e62982aa4ede288e5aa2> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/125e67d7c5077af8fa958569644d61e44a39bbbbdaaf16af0430dcf441e05cec> . <hash://sha256/125e67d7c5077af8fa958569644d61e44a39bbbbdaaf16af0430dcf441e05cec> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/63fae82e8a3aacd11e4a06b5736242aabe40802c6259a38de066de14848e3718> . <hash://sha256/63fae82e8a3aacd11e4a06b5736242aabe40802c6259a38de066de14848e3718> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/7cd305e9d275763c96e7685847460fcc381b5c97c1460c00441f663c1788800f> . <hash://sha256/7cd305e9d275763c96e7685847460fcc381b5c97c1460c00441f663c1788800f> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/38e8e17f6742d39379b96cec2d4e70a5a63a85a28aee49727031c9061f4b1e03> . <hash://sha256/38e8e17f6742d39379b96cec2d4e70a5a63a85a28aee49727031c9061f4b1e03> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/da7450941e7179c973a2fe1127718541bca6ccafe0e4e2bfb7f7ca9dbb7adb86> . <hash://sha256/da7450941e7179c973a2fe1127718541bca6ccafe0e4e2bfb7f7ca9dbb7adb86> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/aab08c5c87ce6a8f400972e2b09b7fa3421947b59407a8feb98388d7e42b49e8> . <hash://sha256/aab08c5c87ce6a8f400972e2b09b7fa3421947b59407a8feb98388d7e42b49e8> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/f449a34dd80d4e33248a1a7cb0d0fa2b8dac49865a0a32ed5bbaacb22addb0d1> . <hash://sha256/f449a34dd80d4e33248a1a7cb0d0fa2b8dac49865a0a32ed5bbaacb22addb0d1> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/b771ed09aea78055e39d5c955997e5d9b42dd9edc6b094d9b8a27df16bdc6b6c> . <hash://sha256/b771ed09aea78055e39d5c955997e5d9b42dd9edc6b094d9b8a27df16bdc6b6c> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/15edbac974fb77347e07cda76358f7f662dd800bfc5b3e476fc66ecdc6203d03> . <hash://sha256/15edbac974fb77347e07cda76358f7f662dd800bfc5b3e476fc66ecdc6203d03> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/4000d2a1af6da5b46f374038d884f91768782a1905d4a75fff3c8c3bb6629913> . <hash://sha256/4000d2a1af6da5b46f374038d884f91768782a1905d4a75fff3c8c3bb6629913> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/f6d133620a665569a13a3fb7ca31b163bf849864812d447238994226d35e3253> . <hash://sha256/f6d133620a665569a13a3fb7ca31b163bf849864812d447238994226d35e3253> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/e10c234ac54f02fd63da87b418f36428b876d91a30a42a4657e1726ba862b900> . <hash://sha256/e10c234ac54f02fd63da87b418f36428b876d91a30a42a4657e1726ba862b900> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/83b4553edfc58e6389d427a08de533236e6a7eeb39b61239d225b0d4188d8c84> . <hash://sha256/83b4553edfc58e6389d427a08de533236e6a7eeb39b61239d225b0d4188d8c84> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/49e079a0bac47ca17c0b14fa711b7742b9332ac64e1866adf13d294692720f9f> . <hash://sha256/49e079a0bac47ca17c0b14fa711b7742b9332ac64e1866adf13d294692720f9f> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/000cd23a8494a8a18f8b552e7f113af418eb2ae85e9908f61f44c720ce70608b> . <hash://sha256/000cd23a8494a8a18f8b552e7f113af418eb2ae85e9908f61f44c720ce70608b> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1cce63489aa8618dcaf19ce2cd6166a7ba801798b235a25a725397d38c2fe957> . <hash://sha256/1cce63489aa8618dcaf19ce2cd6166a7ba801798b235a25a725397d38c2fe957> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/251fa349c051bbda370decb7e5e58960d702add59f6e131ebf7c960d0f93b417> . <hash://sha256/251fa349c051bbda370decb7e5e58960d702add59f6e131ebf7c960d0f93b417> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/810b22c16e1a3911c6eecfca348758d3ffd5b29fc36990015cda6427bdde2233> . <hash://sha256/810b22c16e1a3911c6eecfca348758d3ffd5b29fc36990015cda6427bdde2233> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/dd16f4bae9a02ce71bc3ba4da2809cc5035743a4e23f61f5631f69b08d0e40f5> . <hash://sha256/dd16f4bae9a02ce71bc3ba4da2809cc5035743a4e23f61f5631f69b08d0e40f5> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/bf676e2ce4164f8148a793188650f07c464dc52b2bfc07e92c9f16041baba8d5> . <hash://sha256/bf676e2ce4164f8148a793188650f07c464dc52b2bfc07e92c9f16041baba8d5> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1fd3e156c6ba1632a27b2bebaea36f76afeac8dfecf530d772988832821304ea> . <hash://sha256/1fd3e156c6ba1632a27b2bebaea36f76afeac8dfecf530d772988832821304ea> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/4dbee404b74775cac279e0e7fbc1aa72dddfc70df02b07b9a2f82023dccd4732> . <hash://sha256/4dbee404b74775cac279e0e7fbc1aa72dddfc70df02b07b9a2f82023dccd4732> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1f25e9a78ad0630ead9676807269185761f0d23544a4492a0337c2d306b10686> . <hash://sha256/1f25e9a78ad0630ead9676807269185761f0d23544a4492a0337c2d306b10686> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/20b07c79ff0d48c818e2882816948ed192d5c86bdff2118881d7446b15e63bf1> . <hash://sha256/20b07c79ff0d48c818e2882816948ed192d5c86bdff2118881d7446b15e63bf1> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/6b7bc4dc5901a459663f47628768b53622eda36bd0fa092390c6d1c0323abf6d> . <hash://sha256/6b7bc4dc5901a459663f47628768b53622eda36bd0fa092390c6d1c0323abf6d> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/d98e3bd2bc717bc11a3338cd43fc488bde1d96cb42d8cbe8301f0d9f9753007f> . <hash://sha256/d98e3bd2bc717bc11a3338cd43fc488bde1d96cb42d8cbe8301f0d9f9753007f> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1d184ff657913a77d50b9f33b5bd1f483220fd83f26dbf02c020f98c778aafae> . <hash://sha256/1d184ff657913a77d50b9f33b5bd1f483220fd83f26dbf02c020f98c778aafae> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/a35ec845ec71a2951652d70e574e6280c843879efc3b1639e9ccdb4fbfd45e69> . <hash://sha256/a35ec845ec71a2951652d70e574e6280c843879efc3b1639e9ccdb4fbfd45e69> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/8ff46ae6a30bf9647df0294b92434a83784626b3f8c37163db3edefb049daead> . <hash://sha256/8ff46ae6a30bf9647df0294b92434a83784626b3f8c37163db3edefb049daead> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/afc2a4caa7f07503ccda9154d34dea1852c8283dee5cb4c5df7ddb3ce238ab7d> . <hash://sha256/afc2a4caa7f07503ccda9154d34dea1852c8283dee5cb4c5df7ddb3ce238ab7d> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/5cf1a9e491f218a94af5439f90beb905ae923f94cdd85c542d85c74c241f9e6e> . <hash://sha256/5cf1a9e491f218a94af5439f90beb905ae923f94cdd85c542d85c74c241f9e6e> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/8aacce08462b87a345d271081783bdd999663ef90099212c8831db399fc0831b> . <hash://sha256/8aacce08462b87a345d271081783bdd999663ef90099212c8831db399fc0831b> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/f13b15a20e4fe70b4a111e67ac20ef676404b8456dfc39694f2cb3a4c62a2b2d> . <hash://sha256/f13b15a20e4fe70b4a111e67ac20ef676404b8456dfc39694f2cb3a4c62a2b2d> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/3b39831bcc286c1db44787e21b736378f5847a16b7c39bdac3dd2011e9189dc1> . <hash://sha256/3b39831bcc286c1db44787e21b736378f5847a16b7c39bdac3dd2011e9189dc1> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/916255b2b73680595dcb22b30991a757dd223208473fb4fbe90405757bc07953> . <hash://sha256/916255b2b73680595dcb22b30991a757dd223208473fb4fbe90405757bc07953> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/39f83f5805f32f765003c5e9ee8c69adb3889d9f26dd61bf4aa3a829ac744e2c> . <hash://sha256/39f83f5805f32f765003c5e9ee8c69adb3889d9f26dd61bf4aa3a829ac744e2c> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/5dcf876c6cb0c5b15197acf1ea6989d41c1a1333c6a7e0437f035aa9d22a3790> . <hash://sha256/5dcf876c6cb0c5b15197acf1ea6989d41c1a1333c6a7e0437f035aa9d22a3790> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/9c17ce013b33c3c9e6bc513cb49a14660fad9bd6f87a4f21568cc871b10ba39b> . <hash://sha256/9c17ce013b33c3c9e6bc513cb49a14660fad9bd6f87a4f21568cc871b10ba39b> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/6c4c94cdb224d39e7c655b1a1a6afbba8daf3c9ac64c42ba72dfd346d5d3a547> . <hash://sha256/6c4c94cdb224d39e7c655b1a1a6afbba8daf3c9ac64c42ba72dfd346d5d3a547> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/ff74959ec6e5e98e7db674afcb915f50725f049b968e9a9f10de169aa0a3dcb5> . <hash://sha256/ff74959ec6e5e98e7db674afcb915f50725f049b968e9a9f10de169aa0a3dcb5> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/ab62f4a9601f30d23353a479830f9d2dfc7898e15d2cc2d81977e898d885c908> . <hash://sha256/ab62f4a9601f30d23353a479830f9d2dfc7898e15d2cc2d81977e898d885c908> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/6fb7271a2da1543036e39bcdb4c415a46b5437569eaaf0ffdef3e907a2f4309f> . <hash://sha256/6fb7271a2da1543036e39bcdb4c415a46b5437569eaaf0ffdef3e907a2f4309f> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1> . <hash://sha256/d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> . <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> . <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> . <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> . <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> . <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> . <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> . <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> . <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> . <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> . <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> . <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> . <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> . <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> . <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> . <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> . <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> . <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> . <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> . <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> . <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> . <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> . <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> . <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> . <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> . <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> . <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> . <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> . <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> . <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> . <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> . <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> . <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> . <urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> . If you retrieved data files, you can check the integrity of the extracted archive by confirming that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while. $ java -jar preston.jar verify hash://sha256/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    file:/home/preston/preston-archive/data/3e/ff/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    OK    CONTENT_PRESENT_VALID_HASH    89931 hash://sha256/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    file:/home/preston/preston-archive/data/18/48/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    OK    CONTENT_PRESENT_VALID_HASH    210344 hash://sha256/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    file:/home/preston/preston-archive/data/18/46/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    OK    CONTENT_PRESENT_VALID_HASH    210344 hash://sha256/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    file:/home/preston/preston-archive/data/55/4f/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    OK    CONTENT_PRESENT_VALID_HASH    202701 Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". Files in this data publication: --- start of file descriptions --- -- description of archive and its contents (this file) -- README -- executable java jar containing preston[2] v0.5.4 -- preston.jar --- end of file descriptions --- References [1] Global Biodiversity Information Facility, Integrated Digitized Biocollections, Biological Collection Access Service (GBIF, iDigBio, BioCASe, https://gbif.org,https://idigbio.org,http://biocase.org) accessed from 2018-09-03 to 2023-02-02 with provenance hash://sha256/450deb8ed9092ac9b2f0f31d3dcf4e2b9be003c460df63dd6463d252bff37b55 hash://md5/898a9c02bedccaea5434ee4c6d64b7a2 . [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 . This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation

opencc-by-4.0Feb 2023View details →

Filtered GBIF dataset of occurrences for food species in the brown bear (Ursus arctos) trophic database

We reviewed 47 studies of brown bear diet in Europe by searching in SCI Journals, master’s and PhD theses, and grey literature. We obtained a list of 276 species in the brown bear diet in Europe and Turkey. We used the R package rgbif to download occurrences of each food species from the Global Biodiversity Information Facility (GBIF). We selected occurrences of food species, with an uncertainty of <1 km2, in Europe, North Africa and the Middle East for the period 1989–2018.

opencc-zeroApr 2023View details →

Signed Citation of Provenance of GBIF Occurrence Downloads referenced in Chesshire et al. 2023 doi:10.1111/ecog.06584 hash://sha256/9e3ca96d94229e20f47c14efaa59f793845aa37d9f6c698d2dd35876705e9feb hash://md5/43652e3d26989008026e092e3f04b04d

Chesshire et al. 2023. scientific publication [1] used and referenced  three GBIF mediated occurrence download queries [2,3,4] and associated data. However, in their GBIF records indicate that the data associated with the three download queries are slated for removal at any point after 2021-08-03 . This publication explicitly references the DOIs associated with [2,3,4] and documents the provenance of their associated meta-data records. The provenance was captured using Preston [5,6], a biodiversity dataset tracker.  The signed citation of this provenance publication can be derived from: <pre><code class="language-bash">preston history\ --anchor hash://sha256/9e3ca96d94229e20f47c14efaa59f793845aa37d9f6c698d2dd35876705e9feb\ --remote https://zenodo.org/record/7849559/files</code></pre> <pre><code><hash://sha256/f2d8bdaec7a416a0039e9398cf07c6fa69083f64a6f22de3f252ebb5dd4fd412> <http://www.w3.org/ns/prov#wasDerivedFrom> <hash://sha256/c457565ea0cec7b0392f1271fcda08440919f03bbf29bb8df1eb926c78a972cc> . <urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/c457565ea0cec7b0392f1271fcda08440919f03bbf29bb8df1eb926c78a972cc> .</code></pre> And their tracked content include, as obtained via  <pre><code class="language-bash">preston alias\ --anchor hash://sha256/9e3ca96d94229e20f47c14efaa59f793845aa37d9f6c698d2dd35876705e9feb\ --remote https://zenodo.org/record/7849559/files</code></pre> <table> <caption>Tracked content associated with hash://sha256/9e3ca96d94229e20f47c14efaa59f793845aa37d9f6c698d2dd35876705e9feb</caption> <tbody> <tr> <td>content location</td> <td>content relation</td> <td>content id</td> </tr> <tr> <td>https://doi.org/10.15468/dl.6cxfsw</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/6b8b5f79af53dee98c3654b945389628194c9e9f0ad610852327574b3f99ff7a</td> </tr> <tr> <td>https://doi.org/10.15468/dl.b9rfa7</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/a74cfe8a6c6b7d2361f41cc04979c262b5fbba60c0992253ae78fe6d31f414bb</td> </tr> <tr> <td>https://doi.org/10.15468/dl.w2nndm</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/6a587a219e78ff2674fbb54d99fed48c21b77bc46608d8f991e79ee06a547fac</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182006-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/1c5d8a7399793a634a0dde32f3a94ccf64199f010d7f93baa422c2e1dbb98b2f</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182032-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/23d7c875420bea71d24c1ec3ba127f91eff5b368744de14824de0fc4fc090bb2</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182076-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/6555d581e0ce75c77740811e547da726297d02369b149893faf531f132a2aff0</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182006-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/2c4c4f4cd1151bc65394466416b066c19422fe22b8eb64c5c144fb7889ea2f16</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182032-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/e4e9742259e9232c773ab157e34af1cfebfd09050effb49c15db032057fc5750</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/0182076-200613084148143</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/20915d475c63fa6f96ab127ff5efb5554df40208596244349d110432b478168b</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/request/0182006-200613084148143.zip</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/d14a14e549e3caa8965daecad6fcb0cfddd4be12fb78a495b248c380df41db9b</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/request/0182032-200613084148143.zip</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/3fc1b6491813f5d7e2d32b7c6cadb1ae60558f31a4489e23735c43bd74ed4db6</td> </tr> <tr> <td>https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip</td> <td>http://purl.org/pav/hasVersion</td> <td>hash://sha256/7ddea84a67329ec8eea389d09798e5b6d60d86c39b975590f117679cdbbe8e20</td> </tr> </tbody> </table> This data publication, and associated tracked content, can be cloned using: <pre><code class="language-bash">preston clone https://zenodo.org/record/7849559/files</code></pre> Note that the original publication dated 2023-04-03 did *not* include the associated tracked data retrieved from https://api.gbif.org/v1/occurrence/download/request/0182006-200613084148143.zip, https://api.gbif.org/v1/occurrence/download/request/0182032-200613084148143.zip, https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip. However, on 2023-03-17, the data associated with [2], [3], [4] were still marked for deletion in the GBIF ecosystem, two weeks after the respective DOIs were first cited in the v0.1 of this data publication. This 2023-03-17 publication includes tracked content that shows the associated data is marked for deletion, and contains the associated data archives.   The example below shows a tracked versions of the metadata associated with the download request/query doi:10.15468/dl.w2nndm  [4] indicates that the associated data is scheduled to be "eraseAfter"  "2021-08-03T19:18:46.611+00:00".  <pre><code class="language-bash">preston cat\ --remote https://zenodo.org/record/7837572/files\ hash://sha256/6555d581e0ce75c77740811e547da726297d02369b149893faf531f132a2aff0\ | jq .</code></pre>   <pre><code class="language-json">{ "key": "0182076-200613084148143", "doi": "10.15468/dl.w2nndm", "license": "http://creativecommons.org/licenses/by-nc/4.0/legalcode", "request": { "predicate": { "type": "and", "predicates": [ { "type": "equals", "key": "DATASET_KEY", "value": "e05f6e7d-418e-4407-8e0f-7b8ccf21109e", "matchCase": false }, { "type": "or", "predicates": [ { "type": "equals", "key": "TAXON_KEY", "value": "4334", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "4345", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7911", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7908", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7901", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7905", "matchCase": false } ] } ] }, "sendNotification": true, "format": "DWCA", "type": "OCCURRENCE", "verbatimExtensions": [] }, "created": "2021-02-03T19:18:46.687+00:00", "modified": "2021-02-03T19:20:03.899+00:00", "eraseAfter": "2021-08-03T19:18:46.611+00:00", "status": "SUCCEEDED", "downloadLink": "https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip", "size": 2624689, "totalRecords": 11654, "numberDatasets": 1 }</code></pre> Also, on after (re-)running <pre><code class="language-bash">preston track\ https://doi.org/10.15468/dl.6cxfsw\ https://doi.org/10.15468/dl.b9rfa7\ https://doi.org/10.15468/dl.w2nndm</code></pre> on 2023-04-20, the download record metadata retrieved from  https://api.gbif.org/v1/occurrence/download/0182006-200613084148143 and associated with https://doi.org/10.15468/dl.6cxfsw appeared to no longer be marked for deletion, as shown by the difference between a pre-2023-04-20 version (i.e. hash://sha256/1c5d8a7399793a634a0dde32f3a94ccf64199f010d7f93baa422c2e1dbb98b2f) with the newly retrieved response on 2023-04-20 (i.e., hash://sha256/2c4c4f4cd1151bc65394466416b066c19422fe22b8eb64c5c144fb7889ea2f16). The difference is highlighted below using the diff and preston tools via <pre><code class="language-bash">diff\ <(preston cat hash://sha256/2c4c4f4cd1151bc65394466416b066c19422fe22b8eb64c5c144fb7889ea2f16 | jq .)\ <(preston cat hash://sha256/1c5d8a7399793a634a0dde32f3a94ccf64199f010d7f93baa422c2e1dbb98b2f | jq .)</code></pre> yielding: <pre><code class="language-diff">116c116,117 < "modified": "2023-04-18T08:09:09.757+00:00", --- > "modified": "2021-02-03T18:00:50.416+00:00", > "eraseAfter": "2021-08-03T17:50:18.453+00:00",</code></pre>  This observation is consistent with the 2023-04-18 claim by Daniel Noesgaard [7] that associated download records are no longer marked for deletion. References  [1] Chesshire, P.R., Fischer, E.E., Dowdy, N.J., Griswold, T.L., Hughes, A.C., Orr, M.C., Ascher, J.S., Guzman, L.M., Hung, K.-L.J., Cobb, N.S. and McCabe, L.M. (2023), Completeness analysis for over 3000 United States bee species identifies persistent data gap. Ecography e06584. <a href="https://doi.org/10.1111/ecog.06584">https://doi.org/10.1111/ecog.06584</a> [2] GBIF.org (3 February 2021) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6cxfsw">https://doi.org/10.15468/dl.6cxfsw</a> [3] GBIF.org (3 February 2021) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.b9rfa7">https://doi.org/10.15468/dl.b9rfa7</a> [4] GBIF.org (3 February 2021) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.w2nndm">https://doi.org/10.15468/dl.w2nndm</a> [5] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. <a href="https://doi.org/10.1016/j.ecoinf.2020.101132">https://doi.org/10.1016/j.ecoinf.2020.101132</a> [6] Elliott, M. J., Poelen, J. H., & Fortes, J. (2022, August 29, accepted with minor revisions). Signed Citations: Making Persistent and Verifiable Citations of Digital Scientific Content. <a href="https://doi.org/10.31222/osf.io/wycjn">https://doi.org/10.31222/osf.io/wycjn</a> [7] Noesgaard, D. 2023. https://discourse.gbif.org/t/data-queries-doi-10-15468-dl-6cxfsw-doi-10-15468-dl-b9rfa7-doi-10-15468-dl-w2nndm-used-in-chesshire-et-al-2023-were-cited-but-remain-marked-for-deletion/3915/2 accessed at 2023-04-20 .

opencc-by-4.0Dec 2005View details →

Fig. 4 in Freier Zugang zu den Informationen der Artenvielfalt - Wie werde ich Teil der Global Biodiversity Information Facility (GBIF)?

Fig. 4: Anzahl der im GBIF-Netzwerk verfügbaren Datensätze (Belege und Beobachtungen) in Millionen.

dryad36/100

Using GBIF to Demonstrate Colonial Legacies on Biodiversity Data

Biologists recognize the Caribbean archipelago as a biodiversity hotspot and employ it for their research as a "natural laboratory", but do not always appreciate that these ecosystems are in fact palimpsests shaped by multiple human cultures over millennia. We discuss two case studies of the Caribbean's fragmented natural history collections, the effects of differing legislation and governance by the region's multiple nation states. We use digital natural history specimen data from GBIF to demonstrate how colonial history has influenced specimen collection patterns in Trinidad & Tobago, The Bahamas, and the Greater Antilles.

opencc-zeroMar 2022View details →

opencc-by-4.0Sep 2022View details →

Species occurrence data for Colorado restoration project (derived dataset from GBIF)

GBIF species occurrence data downloaded for 53 species included a restoration project. The data have been cleaned to remove incorrect and imprecise coordinates, as well as records older than 1950.

opencc-by-4.0Dec 2018View details →

Dataset records and references extracted from GBIF used for wild boar distribution modelling

These are the datasets containing wild boar records downloaded from Global Biodiversity Information Facility (GBIF) used to fit presence-only and presence-background models. It indicates the data key, publishing organization key, licenses and references.

opencc-by-4.0Jul 2024View details →

Black Flying Fox Winter Diet Species from GBIF

List of black flying fox winter diet species locations downloaded from the Global Biodiversity Information Facility used for analysis in "Native and Non-native Winter Foraging Resources Do Not Explain Black Flying Fox Winter Roost Occupancy, authored by Baranowski and Bharti. 2024.

opencc-zeroAug 2024View details →

A Review of Candidate Interaction Records in Biodiversity Datasets registered with GBIF and iDigBio as seen via Biodiversity Interaction Finder (BIF) hash://sha256/56ce90e39c2f3a038d577faad70b65573e7ab2e0e69f735f14d71cf4b3b0966b hash://md5/6c497d45da7f79d054d8a5203bd439c0

This is a work in progress. Please check back later for updates.

opennotspecifiedAug 2024View details →

GBIF elevation data

GBIF—the Global Biodiversity Information Facility—is an international network and research infrastructure funded by the world__s governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth. https://www.gbif.org

opennotspecifiedAug 2024View details →

iNaturalist: iNat images from GBIF (100 per taxon) (deprecated)

http://www.inaturalist.org/ is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world. Images and data published on EOL originate from iNaturalist Research Grade observations.- 100 images per taxon - without any image scoring considered

opennotspecifiedAug 2024View details →

iNaturalist: iNat images from GBIF (20 per taxon) with scoring

http://www.inaturalist.org/ is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world. Images and data published on EOL originate from iNaturalist Research Grade observations.100-select-20: From a pool of 100 images/taxon select 20