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22
datasets available to search
ShareScore release 0.9.0
Dataset results
22 results for “GRCh37”
1000 Genomes (Phase 3, GRCh37 -- split into five superpopulations)
<p>Genotype data for individuals from the 1000 Genomes project, split by superpopulation. Simple summary statistics are pre-computed and provided. Each superpopulation consists of a <strong>.bed</strong>, <strong>.bim</strong> and <strong>.fam</strong> file. The original 1000 Genomes dataset is available on the website (https://www.internationalgenome.org/), but the download page itself can be difficult to navigate. Thus, this data serves a straightforward access point to the data.</p> <p>One population, Yorubans (YRI), a subset of individuals from the African (AFR) superpopulation, is also included. Other subsets of individuals can be obtained by running PLINK2 commands on the superpopulation data.</p> <p>Data is used in (1) analysis of independence of LD blocks; (2) performing fine-mapping against GEUVADIS gene expression phenotypes. </p>
dbSNP v155 for GRCh37 and GRCh38
<p>Chromosome, position, RSID, reference allele and alternative allele was downloaded from:</p> <p>https://bioconductor.org/packages/release/data/annotation/html/SNPlocs.Hsapiens.dbSNP155.GRCh38.html https://bioconductor.org/packages/release/data/annotation/html/SNPlocs.Hsapiens.dbSNP155.GRCh37.html</p> <p>A description of filters applied are descripbed [here](http://arvidharder.com/tidyGWAS/articles/transforming_dbsnp_to_parquet.html).</p> <p>The locations, alleles and rsIDs were converted a parquet files, partitioned by chromosome. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.