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99
datasets available to search
ShareScore release 0.9.0
Dataset results
99 results for “Global landscapes”
Data from: Comparative landscape genomics reveals species-specific spatial patterns and suggests human-aided dispersal in a global hotspot for biological invasions
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Data for: Epidemiological landscape of Batrachochytrium dendrobatidis and its impact on amphibian diversity at global scale
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Data from: Does landscape connectivity shape local and global social network structure in white-tailed deer?
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Data from: Global honey bee viral landscape altered by a parasitic mite
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A systematic review of global road ecology camera trap studies that monitored animals’ use of wildlife crossings in road-fragmented landscapes
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Data from: Forest loss in protected areas and intact forest landscapes: a global analysis
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Data from: Which landscape size best predicts the influence of forest cover on restoration success? – A global meta-analysis on the scale of effect
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Data from: Global pairwise RNA interaction landscapes reveal core features of protein recognition
RNA–protein interactions permeate biology. Transcription, translation, and splicing all hinge on the recognition of structured RNA elements by RNA-binding proteins. Models of RNA–protein interactions are generally limited to short linear motifs and structures because of the vast sequence sampling required to access longer elements. Here, we develop an integrated approach that calculates global pairwise interaction scores from in vitro selection and high-throughput sequencing. We examine four RNA-binding proteins of phage, viral, and human origin. Our approach reveals regulatory motifs, discriminates between regulated and non-regulated RNAs within their native genomic context, and correctly predicts the consequence of mutational events on binding activity. We design binding elements that improve binding activity in cells and infer mutational pathways that reveal permissive versus disruptive evolutionary trajectories between regulated motifs. These coupling landscapes are broadly applicable for the discovery and characterization of protein–RNA recognition at single nucleotide resolution.
Global metabolic landscape of Streptomyces strains reveals association between primary and secondary metabolism
<p>SBML files of Streptomyces GEMs</p>
Data from: Global pairwise RNA interaction landscapes reveal core features of protein recognition
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Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes Identifies Dynamic Changes During Mammalian Erythropoiesis (mRNA)
GEO Series GSE148421. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Global DNA methylation landscape reveals roles of DNA methylation involved in the regulation of drug metabolizing enzyme [I]
GEO Series GSE67318. Homo sapiens. 8 samples. Type: Expression profiling by array.
Cdk1 controls global epigenetic landscape in embryonic stem cells
GEO Series GSE134645. Mus musculus. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
The bladder cancer m6A landscape is defined by global methylation dilution and focal 3′-UTR hypermethylation
GEO Series GSE281750. Homo sapiens. 54 samples. Type: Expression profiling by high throughput sequencing.
Global Transcriptome Analysis and Enhancer Landscape of Human Primary T Follicular Helper and T Effector Lymphocytes (ChIP-Seq)
GEO Series GSE58595. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Global landscape of RNA editing in hematopoiesis
GEO Series GSE142216. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
The Global Landscape of Transcription Initiation During the Caulobacter Cell Cycle [timecourse]
GEO Series GSE57364. Caulobacter vibrioides NA1000. 8 samples. Type: Expression profiling by high throughput sequencing.
Global DNA methylation landscape reveals roles of DNA methylation involved in the regulation of drug metabolizing enzyme
GEO Series GSE67485. Homo sapiens. 19 samples. Type: Expression profiling by array; Methylation profiling by genome tiling array.
TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [micro-C-Seq]
GEO Series GSE230409. Homo sapiens. 4 samples. Type: Other.
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq]
GEO Series GSE76648. Arabidopsis thaliana. 2 samples. Type: Methylation profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.