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163
datasets available to search
ShareScore release 0.9.0
Dataset results
163 results for “HiChIP”
Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma. [microC]
GEO Series GSE211776. Homo sapiens. 2 samples. Type: Other.
HiChIP data in A673 & TC71 Ewing cell lines (STAG1 and STAG2 knock-out)
GEO Series GSE133227. Homo sapiens. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia [hiChIP]
GEO Series GSE243913. Homo sapiens. 16 samples. Type: Other.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [HICHIP_seq]
GEO Series GSE244950. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Super-silencer perturbation by EZH2 and REST inhibition leads to large loss of chromatin interactions and reduction in cancer growth [HiChIP]
GEO Series GSE193484. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression (HiCHIP)
GEO Series GSE168719. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide CRISPR screen identifies IRF1 and TFAP4 as transcriptional regulators of Galectin-9 in T cell acute lymphoblastic leukemia [HiChIP-seq]
GEO Series GSE275040. Homo sapiens. 4 samples. Type: Other.
High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion [HiChIP]
GEO Series GSE285007. Homo sapiens. 4 samples. Type: Other.
The transcriptional equilibration between androgen receptor and MYC signatures during prostate cancer transition centralizes on a distal developmental super-enhancer circuitry (HiChIP)
GEO Series GSE157974. Homo sapiens. 3 samples. Type: Other.
Pre-established chromatin interactions mediate acute transcriptional response to Epo [HiChIP]
GEO Series GSE142004. Mus musculus. 8 samples. Type: Other.
KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress [HiCHIP]
GEO Series GSE153013. Homo sapiens. 6 samples. Type: Other.
YY1 is a structural regulator of enhancer-promoter loops [HiChIP]
GEO Series GSE99519. Mus musculus; Homo sapiens. 17 samples. Type: Other.
A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [HiChIP]
GEO Series GSE166177. Mus musculus. 6 samples. Type: Other.
Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma. [HiC]
GEO Series GSE193824. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Functional characterization of genetic variants associated with upper digestive cancers [HiChIP]
GEO Series GSE235431. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [MB157_HiChIP]
GEO Series GSE116869. Homo sapiens. 3 samples. Type: Other.
Dynamic 3D chromosomal landscapes in acute leukemia [HiChIP]
GEO Series GSE134762. Homo sapiens. 1 samples. Type: Other.
HiChIP data for HNSCC subtypes
GEO Series GSE185532. Homo sapiens. 4 samples. Type: Other.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases [HiChIP]
GEO Series GSE189453. Homo sapiens. 2 samples. Type: Other.
DNA methylation insulates exons from CTCF loops with nuclear speckles (HiChIP)
GEO Series GSE217754. Homo sapiens. 16 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.