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ShareScore release 0.9.0
Dataset results
73 results for “Homo sapiens sapiens”
Sequencing reads simulated with ART from Homo sapiens CHM13 chr 21
<p>Sequencing reads simulated with ART from Homo sapiens CHM13 chr 21</p>
genomecomb additional files (cadd, minimap2) for reference data for Homo sapiens (hg38) version 0.108.0
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Gene Ontology Annotations for Homo Sapiens Gene Products
<p><strong>ABSTRACT:</strong></p> <p>This dataset displays the utilization of Gene Ontology (GO) and the web application AmiGO for gene annotation across multiple species, including Homo sapiens (humans). The study involves the analysis of diverse gene types such as complexes, RNAs, proteins, and isoforms which are all gene products found specifically in humans. The provided dataset encompasses comprehensive information regarding these genes, including data source companies, gene names, descriptions, and Gene Ontology IDs. By leveraging Gene Ontology and AmiGO, this research aims to provide valuable insights into the functional characteristics and annotations of different gene types, contributing to a deeper understanding of gene function in the context of human biology.</p> <p><strong>Instructions:</strong></p> <p>Data was collected as 4 separate sets with 4 different types of genes and the duplicated genes, organism type, references, and dates were removed. Links to the specific gene descriptions were added to the dataset as a new column. All four data sets are appended to one another because all of the columns are identical. Isoforms have a different link location going to UniProt.</p> <p><strong>Inspiration:</strong></p> <p>This dataset uploaded to U-BRITE for "DRG_DEPOT" summer 2023 team project.</p> <p><strong>Acknowledgements:</strong></p> <p><a href="https://pubmed.ncbi.nlm.nih.gov/?term=Carbon+S&cauthor_id=19033274">Seth Carbon</a><sup> <a href="https://pubmed.ncbi.nlm.nih.gov/19033274/#full-view-affiliation-1">1</a></sup>, <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Ireland+A&cauthor_id=19033274">Amelia Ireland</a>, <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Mungall+CJ&cauthor_id=19033274">Christopher J Mungall</a>, <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Shu+S&cauthor_id=19033274">ShengQiang Shu</a>, <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Marshall+B&cauthor_id=19033274">Brad Marshall</a>, <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Lewis+S&cauthor_id=19033274">Suzanna Lewis</a>; <a href="https://pubmed.ncbi.nlm.nih.gov/?term=AmiGO+Hub%5BCorporate+Author%5D">AmiGO Hub</a>; <a href="https://pubmed.ncbi.nlm.nih.gov/?term=Web+Presence+Working+Group%5BCorporate+Author%5D">Web Presence Working Group</a></p> <p>Collaborators, Affiliations expand PMID: <strong>19033274</strong> PMCID: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/pmc2639003/">PMC2639003</a> DOI: <a href="https://doi.org/10.1093/bioinformatics/btn615">10.1093/bioinformatics/btn615</a></p> <p><strong>AmiGO online access to ontology and annotation data- </strong> https://amigo.geneontology.org/amigo/search/annotation</p> <p><strong>U-BRITE last update data: </strong>06/27/2023</p>
PFOCR GMT for Homo sapiens
<p>GMT file of human genes (NCBI Gene IDs) extracted from published pathway figures.</p>
Data and code associated with Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity
<p>Here data and codes are available to reproduce the models and figure rendering of the paper: “Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity”.</p> <p>This research is based on two sets of data: 1) herbivore species recovered from archaeo-palaeontological sites, and 2) chronometric determinations obtained from archaeological units with techno-complexes attributed to Neanderthals or modern humans. All this information is available in the Data.xlsx file.</p> <p>The file MainScript.R includes the functions to estimate the biomass of each herbivore species according to the Net Primary Productivity (NPP), the allometric relationships between body mass and population density, and the specific herbivore guild composition in each region. This script was used to analyse and compare the NPP and the herbivore guild composition in each biogeographic region of Europe during the Marine Isotope Stage (MIS) 3. The file HB.R reproduces the validation process of the macroecological model to estimate herbivore abundances (used in Main.R) against empirical present-day herbivore densities from a broad range of terrestrial ecosystems.</p> <p>Within the Paleoclimate folder, the file Pollen.R was used to perform pollen-based paleoclimate reconstructions with weighted averaging (WA) regressions. These predictive functions estimate temperature and precipitation from the palynological fossil record in Europe.</p> <p>Within the OLE folder, the OLE.R was used to perform optimal linear estimation (OLE) models and compare the obtained chronologies with the outcomes obtained from Bayesian age models.</p> <p>In the "Correlations_ESF" folder, there are too heavily compressed files. To run the codes correctly, it is necessary first to decompress any document and save all files within the same folder. The “Output_Experiment_A_B_C_FC1&2” file is in Excel Binary Workbook format (.xlsb) because it is a large-sized document. Before running the codes within this folder, save/convert this file into .xlsx format. There is a "README" file to help you with these two steps. Once these steps and requirements are met, the file "Correlations_ESF.R" can be run to perform Eigenvector Spatial Filtering analyses that assess the correlation between the end of the techno-complexes associated with Neanderthals, those associated with AMH, and the productivity of the ecosystems in each European region.</p> <p>As the data and codes in this repository are complete, they can be reproduced with only an R environment (tested for R v4.2.0) in RStudio. The necessary package dependencies are documented in each .R file. The content of this repository was made possible thanks to funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 818299) for the SUBSILIENCE project.</p>
Homo sapiens, pygmy (2501.1rp41) - innominate
***Homo sapiens*** Location: East Africa. Age: modern. Material: epoxy resin cast. Dimensions: length, 78 mm; width, 111 mm; height, 154 mm. Notes: RLA catalog no. 2501.1rp41 (cast). Complete right innominate of female pygmy individual from East Africa; origin at Makerere College Medical School. Cast made by the Wenner-Gren Foundation Casting Program at the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Joy Mersmann. Source: Objaverse 1.0 / Sketchfab
Homo sapiens (Predmost 3) (1979rp47-1)- mandible
***Homo sapiens*** Location: Predmosti, Moravia, Czech Republic. Age: 26,000 years B.P. Material: plaster cast. Dimensions: length, 116 mm; width, 123 mm; height, 66 mm. Notes: RLA catalog no. 1979rp47 (cast). Skeletal remains excavated between 1884 and 1930, and destroyed by fire during World War II. Nearly complete mandible. Cast made by the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Jordyn Gray. Source: Objaverse 1.0 / Sketchfab
Mutations in the initiation codon of homo sapiens and capra hirucs genome
<p>Dataset obtained by using the script <em>ensemblMining.pl</em> available in the dev branch of the following repository: <a href="https://github.com/fanavarro/hemodonacion">https://github.com/fanavarro/hemodonacion</a>. It containes several features that refer to mutations in the initiation codon of both human and goat genome. This dataset has been used for the following work: <a href="https://github.com/JavierCastellD/PredictorMutacionCodonInicio">https://github.com/JavierCastellD/PredictorMutacionCodonInicio</a>.</p>
genomecomb reference data for Homo sapiens (hg19) version 0.11.0
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genomecomb reference data for Homo sapiens (hg38) version 0.98.7
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genomecomb reference data for Homo sapiens (hg19) version 0.9
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genomecomb reference data for Homo sapiens (hg19) version 0.8.5
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genomecomb reference data for Homo sapiens (hg19) version 0.98.7
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genomecomb reference data for Homo sapiens (hg19) version 0.98.7 cad annotation data
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genomecomb reference data for Homo sapiens (hg38) version 0.11.0
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genomecomb reference data for Homo sapiens (hg38) version 0.108.0
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Gene expression analysis in Eight Homo sapiens Cell lines
GEO Series GSE21045. Homo sapiens. 8 samples. Type: Expression profiling by array.
In vitro cultured-cells from Homo sapiens control and treated with BHB and LPS raw sequence reads
GEO Series GSE252513. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Homo sapiens PBMCs: pre-vaccination (stimulation vs. no stimulation with EV71 antigen) vs. post-vaccination (stimulation vs. no stimulation with EV71 antigen)
GEO Series GSE72618. Homo sapiens. 60 samples. Type: Expression profiling by array.
Homo sapiens whole blood infected with Candida spp. (here: Candida tropicalis)
GEO Series GSE114178. Candida tropicalis; Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.