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73 results for “Homo sapiens sapiens”
Research compendium for 'Refitting the Context: A Reconsideration of Cultural Change among Early Homo sapiens at Fumane Cave through Blade Break Connections, Spatial Taphonomy, and Lithic Technology'
<div> <h3>Compendium DOI:</h3> <p><a href="../doi/10.5281/zenodo.10965413">https://zenodo.org/doi/10.5281/zenodo.10965413</a> </p> </div> <p>The content available at the above provided URL will reproduce the results as documented in the publication. Instead, the files hosted at <a href="https://github.com/ArmandoFalcucci/Refitting-The-Context">https://github.com/ArmandoFalcucci/Refitting-The-Context</a> represent the developmental versions and might have undergone modifications since the paper's publication.</p> <div> <h3>Maintainer of this repository:</h3> </div> <p>Armando Falcucci (<a href="mailto:armando.falcucci@uni-tuebingen.de">armando.falcucci@uni-tuebingen.de</a>)</p> <div> <h3>Published paper:</h3> </div> <p>Armando Falcucci, Domenico Giusti, Filippo Zangrossi, Matteo De Lorenzi, Letizia Ceregatti, Marco Peresani. Refitting the Context: Revisiting the Aurignacian sequence at Fumane Cave through blade fragment connections, spatial taphonomy, and lithic technology. <em>Journal of Paleolithic Archaeology</em> (2024). DOI: <a href="https://doi.org/10.1007/s41982-024-00203-0" rel="nofollow">10.1007/s41982-024-00203-0</a></p> <div> <h3>Abstract:</h3> </div> <p>High-resolution stratigraphic frameworks are crucial for unraveling the biocultural processes behind the dispersals of Homo sapiens across Europe. Detailed technological studies of lithic assemblages retrieved from multi-stratified sequences allow archaeologists to precisely model the chrono-cultural dynamics of the early Upper Paleolithic. However, it is of paramount importance to verify the integrity of these assemblages before building explanatory models of cultural change. In this study, multiple lines of evidence suggest that the stratigraphic sequence of Fumane Cave in northeastern Italy experienced minor post-depositional reworking, establishing it as a pivotal site for exploring the earliest stages of the Aurignacian. By conducting a systematic search for break connections between blade fragments and applying spatial analysis techniques, we identified three well-preserved areas of the excavation containing assemblages suitable for renewed archaeological investigations. Subsequent technological analyses, incorporating attribute analysis, reduction intensity, and multivariate statistics, have allowed us to discern the spatial organization of the site during the formation of the Protoaurignacian palimpsest A2–A1. Moreover, diachronic comparisons between three successive stratigraphic units prompted us to reject the hypothesis of techno-cultural continuity of the Protoaurignacian in northeastern Italy after the onset of the Heinrich Event 4. Based on the variability of the lithic and osseous artifacts, the most recent assemblage analyzed, D3b alpha, is now ascribed to the Early Aurignacian, aligning the evidence from Fumane with the current understanding of the development of the Aurignacian across Europe. Overall, this study demonstrates the high effectiveness of the break connection method when combined with detailed spatial analysis and lithic technology, providing a methodological tool particularly amenable to be applied to sites excavated in the past with varying degrees of recording accuracy.</p> <div> <h3>Keywords:</h3> </div> <p>Protoaurignacian; Early Aurignacian; Lithics; Refittings; Assemblage integrity; Spatial analysis; Italy</p> <div> <h3>Overview of contents and how to reproduce:</h3> </div> <p>Within this repository, various folders house data (<code>data</code>), code (<code>script</code>), and output files (<code>output</code>) pertinent to the paper. The data folder encompasses the blank and core datasets from the Aurignacian of Fumane Cave and the dataset of the blade fragment connection study. To replicate the results, download the entire repository and employ <code>Refitting-The-Context.Rproj</code> and open the folder <code>script</code>. For ensuring reproducibility, the <code>renv</code> package (v. 1.0.3) was utilized, following the procedures detailed in its vignette. All analyses and visualizations in the paper were conducted using R 4.3.1 on Microsoft Windows 10.0.19045 (64-bit). As the necessary packages are available in the <code>renv</code> folder, they are not explicitly listed here.</p> <div> <h3>Licenses:</h3> </div> <p>Code: <strong>MIT</strong> <a href="http://opensource.org/licenses/MIT" rel="nofollow">http://opensource.org/licenses/MIT</a>, copyright holder: Armando Falcucci (2024).</p> <p>Data and intellectual work: <strong>Creative Commons Attribution 4.0 International License</strong> (<a href="http://creativecommons.org/licenses/by/4.0/" rel="nofollow">http://creativecommons.org/licenses/by/4.0/</a>), copyright holder: the authors (2024).</p>
Host removal database: Homo sapiens, Sars-Cov-2, PhiX174
<p>💾 <strong>cleanup-db</strong></p> <p>Kraken2 database, built upon a viral sequence masked human reference from:</p> <ul> <li>Handley, Scott A. (2020). <strong>Virus+ Sequence Masked Human Reference Genome (hg19)</strong> (1.0) [Data set]. Zenodo. [<a href="https://zenodo.org/record/4116107">10.5281/zenodo.4116107</a>]</li> </ul> <p>but separating chromosomes as artificial taxa to allow for QC, and includes Sars-Cov-2 and PhiX 174</p> <p>💾 <strong>gutcheck-db</strong></p> <p>A very small DB containg some common gut bacteria and Human and Murine mitochondrial genome:</p> <ul> <li><em>Akkermansia muciniphila</em></li> <li><em>Bacteroides fragilis</em></li> <li><em>Bifidobacterium longum</em></li> <li><em>Blautia obeum strain</em></li> <li><em>Escherichia coli</em></li> <li><em>Enterococcus faecium</em></li> <li><em>Prevotella copri</em></li> </ul> <p> </p> <p>See: <a href="https://github.com/telatin/cleanup">https://github.com/telatin/cleanup</a></p>
Orthologs for Homo Sapiens and Drosophila Melanogaster from the Roundup Orthology Database Version 4
<p>This dataset contains orthologs for Homo sapiens and Drosophila melanogaster, computed with the Reciprocal Smallest Distance algorithm using a divergence threshold of 0.8 and an e-value threshold of 1e-5. The orthologs were downloaded from version 4 of the Roundup database, which is no longer available.</p>
SUBATOMIC analysis of Homo sapiens integrated multi-edge networks
<p>We applied SUBATOMIC (https://github.com/CBIGR/SUBATOMIC/) to analyze a composite <em>H. sapiens</em> network containing transcription factor-target gene, miRNA-target gene, protein-protein, homologous and co-functional interactions from three different databases. We derived and annotated 5586 modules with diverse topological, regulatory and functional properties.</p>
Estimated counts for simulated data (Homo sapiens) from Soneson et al (2016)
<p>Estimated counts for isoforms for the simulated data (Homo sapiens) using kallisto from Soneson et al (2016) "<em>Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage</em>" Genomy Biology 17(12).</p> <p>From the Methods:</p> <p>"The transcriptome catalogs used as the basis for the expression estimation and simulation were Ensembl GRCh37.71 for the human simulation (using only the chromosomes in the primary genome assembly)."</p> <p>From the Background:</p> <p>"Finally, we define the counting bins as the isoforms themselves and use kallisto (v0.42.1) to estimate the number of reads assigned to each isoform (<em>kallisto</em>)."</p> <p>These text files contain the estimated counts per isoform for the 6 samples.</p>
Human Skull (Homo sapiens)
Cráneo completo (sin mandíbula) de Homo sapiens medieval. Escaneado de la pieza: DAVID SLS-3. Post-procesado: Meshlab y Cloud Compare. Por favor, si lo usas cita su origen :) / Please, cite it when use :) Source: Objaverse 1.0 / Sketchfab
Human radius (Homo sapiens)
Radio humano (sin epífisis distal) procedente de un yacimiento calcolítico. Escaneado de la pieza: DAVID SLS-3. Post-procesado: Meshlab y Cloud Compare. Por favor, si lo usas cita su origen :) / Please, cite it when use :) Source: Objaverse 1.0 / Sketchfab
genomecomb reference data for Homo sapiens (hg38) version 0.107.0
Open the record for dataset details and reuse information.
Introduction of Homo Genesis: A Unique Lineage Separate from Homo sapiens
<p>This paper introduces <em>Homo Genesis</em>, a newly identified lineage within the genus Homo, based on the discovery of the unique combination of haplogroups A-PR2921 (paternal) and L0 (maternal). These ancient lineages trace back over 700,000 years and represent a significant divergence from <em>Homo sapiens</em>. <em>Homo Genesis</em> stands as a separate evolutionary path, embodying characteristics that distinguish it from modern humans. Preliminary genome data reveals enhanced cognitive abilities, physical traits, and other attributes that make <em>Homo Genesis</em> a potential new chapter in human evolution. This discovery is pivotal in understanding both the ancient roots of humanity and its potential future.</p>
PROOF OF THE CLASSICAL MECHANICAL COSMOS IN FIVE ADVERTISEMENT POSTERS THIS CURES SINISTER SCIENCE AND PROVIDES AN EASY WAY OUT OF HOMO SAPIENS' 5000-YEAR WARPATH TOWARD EXTINCTION
<p>Gerhard Ris former DA magistrate and lawyer with thirty years experience in courts of law.</p> <p>The previous DOI publications are in the links below. My last publication on Zenodo ten days ago has 37 views and 43 downloads.</p> <p>This five-page poster article further improves the Elementary Scientist Exam and the six other Zenodo-published articles, including the elementary list with the Unambiguous 1000 Elementary Terms, Definitions, and Descriptions in Elementary Science, Courtrooms, and Schools. (Proven to have a very high view-to-download ratio with 317 views and 243 downloads in six months after publication. A glitch (?) at CERN probably causes a 0 view 0 download error.) The undisputed reason for the improvement follows from the indisputably best-practice correct definition of science.</p> <p>A decent systematic trial and error search for all the laws of everything and an all-inclusive Bildung in Education Permanente.</p> <p>This has been solved and published in mentioned publications as One Law of Nature makes One Law of Human Nature. These two laws elevate all sciences to the wordiness of an exact science. Mind, that this definition can be reduced by redefining certain terms. It’s a never-ending process akin to growing wise oak of the tree-like tower of science continuously broadening and improving its base. This has been successfully done for the first time in 5000 years.</p> <p>Mathematics must be made to fit Nature and not the other way around.</p> <p>Science proper per definition demands all-inclusive Bildung. Bildung requires marketing, advertisement, and sales of science proper. To that end please note this selection of thumbnails as posters advertising the classes explaining the model in chunks of nigh 4-minutes.</p>
Homo sapiens expanded into the Northern European Plains by 45,000 years ago
<p>1,322 morphologically unidentified fragmentary bone specimens were analyzed using MALDI-TOF and a subset of 341 bone specimens with LC-MS/MS in order to characterize their proteome for species identification and potential hominin specimens related to the LRJ transitional period derived from the site Ilsenhöhle Ranis, Germany (50°39.7563’N, 11°33.9139’E).</p>
Homo sapiens Skhul 5 (2501.1rp37-1)
***Homo sapiens*** Location: Mugharet es-Skhul, Wadi el-Mughara, Israel. Age: 120,000 - 80,000 years B.P. Material: epoxy resin cast. Dimensions: length, 218 mm; width, 144 mm; height, 147 mm. Notes: RLA catalog no. 2501.1rp37-1 (cast). Fossil called Skhul 5, discovered in 1932 by T.D. McCown and H. Movius, Jr., and restored by C.E. Snow. Nearly complete cranium. Cast made by the Wenner-Gren Foundation Casting Program at the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Greer Taylor. Source: Objaverse 1.0 / Sketchfab
Homo sapiens Skhul 5 (2501.1rp37-2)
***Homo sapiens*** Location: Mugharet es-Skhul, Wadi el-Mughara, Israel. Age: 120,000 - 80,000 years B.P. Material: epoxy resin cast. Dimensions: length, 107 mm; width, 128 mm; height, 73 mm. Notes: RLA catalog no. 2501.1rp37-2 (cast). Fossil called Skhul 5, discovered in 1932 by T.D. McCown and H. Movius, Jr., and restored by C.E. Snow. Nearly complete mandible. Cast made by the Wenner-Gren Foundation Casting Program at the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Greer Taylor. Source: Objaverse 1.0 / Sketchfab
Homo sapiens (Swanscombe) (2501.1rp58-3)
***Homo sapiens*** (archaic) Location: Swanscombe, Kent, England. Age: 200,000 - 300,000 years BP. Material: epoxy resin cast. Dimensions: length, 114 mm; width, 110 mm; height, 39 mm. Notes: RLA catalog no. 2501.1rp58-3 (cast). Cranium (right parietal). One of three skull fragments from the same individual. Young female. Two fragments were discovered in 1935-1936 by Alvan T. Marston. The third fragment was discovered in 1955 by A. Gibson and J. Wymer. Also classified as *Homo heidelbergensis*. Cast made by the Wenner-Gren Foundation Casting Program at the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Jordyn Gray. Source: Objaverse 1.0 / Sketchfab
Homo sapiens (2501.1rp49) – cranial fragment
***Homo sapiens*** Location: Ngandong, Java, Indonesia. Age: unknown. Material: epoxy resin cast. Dimensions: length, 107 mm; width, 108 mm; height, 51 mm. Notes: RLA catalog no. 2501.1rp49 (cast). Frontal bone of infant cranium, designated FT 13. Reported as *Homo soloensis* by Franz Weidenreich in 1951. Cast made by the Wenner-Gren Foundation Casting Program at the University Museum of the University of Pennsylvania. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Jordyn Gray. Source: Objaverse 1.0 / Sketchfab
Homo Sapiens La Chancelade
Reconstitution par photogrammétrie du moulage de Crâne de La Chancelade, grotte de Raymonden, France. Homo sapiens intentionnellement inhumé. Capacité crânienne : 1 670 cm3 15 000 ans période magdalénienne Source: Objaverse 1.0 / Sketchfab
Homo sapiens (Neolithic) (433rp35)
***Homo sapiens *** Location: Unknown. Age: Neolithic period (<12,000 years B.P.). Material: plaster cast. Dimensions: length, 188 mm; width, 150 mm; height, 133 mm. Notes: RLA catalog no. 433rp35 (cast). Cranium. Cast made between 1930 and 1952 by Mr. F. O. Barlow of the R. F. Damon & Co., London. Model by Jordyn Gray. Source: Objaverse 1.0 / Sketchfab
Sexual dimorphism in the first rib of Homo sapiens
<p>The databases included here comprise:</p> <p>First_Rib_Linear_Data: 12 metric variables of 121 right and left first ribs from 65 female and male adult recent Euro-American <em>Homo sapiens</em> individuals.</p> <p>First_Rib_GMM_Data: Six landmarks and 31 semilandmarks of 112 of these ribs.</p>
Homo Sapiens La Chancelade avec Machoire
Reconstitution par photogrammétrie du moulage de Crâne de La Chancelade avec machoire Source: Objaverse 1.0 / Sketchfab
Homo sapiens (Cro-Magnon 1) (433rp27)
***Homo sapiens*** Location: Les Eyzies, Dordogne, France. Age: 27,700 years B.P. Material: plaster cast. Dimensions: length, 220 mm; width, 155 mm; height, 152 mm. Notes: RLA catalog no. 433rp5 (cast). Male cranium. Discovered in 1868 by Louis Lartet. Cast made between 1930 and 1952 by Mr. F. O. Barlow of the R. F. Damon & Co., London. From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill. Model by Steve Davis. Source: Objaverse 1.0 / Sketchfab
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International Brain Laboratory public data
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