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Fig. 1 in Strongyloidiasis in humans and dogs in Southern Italy: an observational study
Fig. 1 (MAP 1): Distribution of sampled farms and kennels differentiated by colours (red=kennels; violet=livestock farms; Blue=agricultural farms)
SSRA and Human Behaviour Study - Associated Raw Data and Scripts
<p>We are releasing the final version of this dataset containing source data and scripts for a paper concerning an SSRA drug and human behaviour.</p> <p>V4 -> V5 - Fixed minor issues following editorial feedback.</p> <p>For any questions, please contain Michael Colwell (michaelcolwell92@gmail.com / michael.colwell@psych.ox.ac.uk).</p>
Fig. 3. Spatial 2D in Nir Raman Scattering For The Study Of Biochemical Features Of The Human Skin Epidermis And A Skin Surface Micro-Mapping In Vitro
Fig. 3. Spatial 2D image of the human epidermis surface: A) an optical image; B) mapping scheme; C) micro–Raman signal intensity map.
Fig. 2 in Nir Raman Scattering For The Study Of Biochemical Features Of The Human Skin Epidermis And A Skin Surface Micro-Mapping In Vitro
Fig. 2. Average Raman spectra of the unprocessed right–hand index fingertips skin epidermis of the 2 volunteers (in vitro). A,B,C- the man's skin samples D,E,F- the women's skin samples.
Fig.1 in Nir Raman Scattering For The Study Of Biochemical Features Of The Human Skin Epidermis And A Skin Surface Micro-Mapping In Vitro
Fig.1. The estimates of pure Raman spectra: A. - the man's skin right–hand index fingertips epidermis, B. - the women's skin right–hand index fingertips epidermis, measured directly from the sample surface (in vitro).
Fig. 14 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 14. Grasping pattern of the hand. A. Grasping a bough of the tree; B. Holding a piece of fruit. Sketches are drawn imitating the hand motion shown in movies of NHK BS TV program (Yamagiwa, 2012).
Fig. 13. Knuckle walk. A in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 13. Knuckle walk. A. The trunk tilts backward because of longer forelimbs; B. The knuckle walk of gorillas is walking with MP joints in extension and PIP joints in deep flexion bearing the weight on the dorsal aspects of the middle phalanges of the hands. Sketches are drawn imitating the walking style shown in movies of NHK BS TV program (Yamagiwa, 2012).
Fig. 12 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 12. Dorsal aspect of the metacarpophalangeal joint. A. A shallow groove (white arrows) is seen along the dorsal margin of the articular cartilage of the metacarpal head; B. The dorsal edge of the proximal phalanx base sits in the groove by extending the MP joint passively; C. Grooves are deep enough at the 3rd and 4th metacarpals (white arrows), but not at the 2nd and 5th in the skeletal specimen of another gorilla stored in National Museum of Nature and Science.
Fig. 11. Extensor apparatus and retaining ligaments. A in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 11. Extensor apparatus and retaining ligaments. A. Extensor apparatus consists of two components: extrinsic compornent (dark green) and intrinsic component (light green). Ligamentous structures are shown in orange color. The interosseous hood is the proximal hood-like portion of the aponeurotic expansion of the interosseous tendon (a thick arrow). (modified from Tubiana and Valentin, 1964); B. On the radial side of the middle finger, the interosseous hood is shown. Adherent to the proximal margin of this interosseous hood, a sagittal band expands between DTML and EDC tendon; C. The oblique retinacular ligament (ORL) is well developed at the radial aspect.
Fig. 9. Underdeveloped EIP. A in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 9. Underdeveloped EIP. A small slender muscle sitting at the dorsoradial aspect of the ulna is judged to be underdeveloped EIP muscle although its tendon attaches to the dorsal aspect of the wrist (a white block arrow).
Fig. 7 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 7. Innervation of intrinsic muscles by the radial bundle of UABM. The radial bundle first gives off branches to the hypothenar muscles and to the lumbrical muscles of the little and ring fingers (marked with asterisks), and then to interossei (4th DI, 3rd PI and 3rd DI, 2nd PI).
Fig. 15 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 15. The mechanism to block hyperextension of the MP joint with the function of the sagittal band. A. When the finger is flexed, the sagittal band passes over the joint axis of the metacarpal head in coordination with the distalward movement of the extensor tendon; B. When the MP joint is extended and surpasses the range of extension, the traction force of the finger extensor is blocked with the tightened sagittal band that transmits the force palmarward so that the proximal phalanx base does not move further to hyperextension.
Fig. 5 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 5. Palmar aspect of the proximal phalanx. An osseous crest is seen along each edge of the palmar aspect of the phalanx and the groove is formed between those crests. The head of the proximal phalanx slants palmarward.
Fig. 3. Underdeveloped thumb flexor. A in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 3. Underdeveloped thumb flexor. A. The tendon of the thumb flexor is much thinner than that of FDS or FDP; B. Its muscle belly (uFPL) bifurcates from the distal portion of FDP muscle of the index finger; C. Pulling FDP index finger at its myotendinous junction with a retractor revealed that the thumb and the index finger were flexed simultaneously.
Fig. 4. Finger flexor sheath and pulley system. A in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 4. Finger flexor sheath and pulley system. A. The entire sheath of the finger flexor of the ring finger is shown with the names of individual pulleys. The very thick and wide A2′ pulley (a white thick arrow) is located between A2 and C1; B. The inner surface of the sheath showing that A2′ pulley is twice as wide as A3.
Fig. 2 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 2. The subcutaneous structures of the palm. A. The palmar aponeurosis is absent except for its most distal parts: natatory ligaments (white arrows); B. The ligamentous fibers (white arrows) arising from the distal margin of the flexor retinaculum; C. Ligamentous septum (a white arrow) along the flexor tendon formed with those ligamentous fibers.
Fig. 10 in Anatomical Study of the Right Forearm and Hand of One Western Gorilla (Gorilla gorilla) for Comparison with Humans with Respect to Motions of the Thumb and Fingers
Fig. 10. The insertions of the first dorsal interosseous muscle. A. The distal portion of the 1st DI muscle is voluminously muscular and passes into the tendinous portion of the interosseous hood at the level of the proximal portion of the proximal phalanx; B. The tendinous insertion to the proximal phalanx base is exposed by reflect- ing the extensor apparatus. The tendon has been divided to explore the deeper structure and then re-sutured.
Raw data sets from Jones et al. 2018 QSR publication: A multi-proxy approach to understanding complex responses of saltlake catchments to climate variability and human pressure: A Late Quaternary case study from south-eastern, Spain
<p>Attached are the raw data sets containing the pollen data, DXR, Grain size and C14 ages from the recent publication: Jones et al. 2018 QSR publication: A multi-proxy approach to understanding complex responses of saltlake catchments to climate variability and human pressure: A Late Quaternary case study from south-eastern, Spain.</p> <p>Note that these data sets do contain hiatuses and a major age-reversal due to erosian which have likely been caused by increased seasonal wetness at the onset of the Holocene. A full explanation is provided in our 2018 publication. If you do wish to use the data, it is essential that you read the publication inorder to interpret the results correctly. We also require that when using this data that you correctly cite it (Bibliographic reference and the doi number of the data set). There were some problems uploading the XRF (geochemical) data sets, so I haven't included these yet, but hopefully will do eventually. </p> <p>Below I have also included the abstract from our publication, which provides an overview of the purpose of our work and a brief summary of the main findings.</p> <p>Abstract of Jones et al. 2018:</p> <p>The article focuses on a former salt lake in the upper Vinalopo Valley in south-eastern Spain. The study spans the Late Pleistocene through to the Late Holocene, although with particular focus on the period between 11 ka cal BP and 3000 ka cal BP (which spans the Mesolithic and part of the Bronze Age). High resolution multi-proxy analysis (including pollen, non pollen palynomorphs, grain size, X-ray fluorescence, and X-ray diffraction) was undertaken on the lake sediments. The results show strong sensitivity to<br> both long term and small changes in the evaporation/precipitation ratio, affecting the surrounding vegetation composition, lake-biota and sediment geochemistry. To summarise the key findings the main general trends identified include: 1) Hyper-saline conditions<br> and low lake levels at the end of the Late Glacial 2) Increasing wetness and temperatures which witnessed an expansion of mesophilic woodland taxa, lake infilling and the establishment of a more perennial lake system at the onset of the Holocene 3) An increase in solar insolation after 9 ka cal BP which saw the re-establishment of pine forests 4) A continued trend towards increasing dryness (climatic optimum) at 7 ka cal BP but with continued freshwater input 5) An increase in sclerophyllous open woody vegetation (anthropogenic?), and increasing wetness (climatic?) is represented in the lake record between 5.9 and 3 ka cal BP 6) The Holocene was also punctuated by several aridity pulses, the most prominent corresponding to the 8.2 ka cal BP event. These events, despite a paucity of well dated archaeological sites in the surrounding area, likely altered the carrying capacity of this area both regionally and locally, particularly during the Mesolithic-Neolithic transition, in terms of fresh water supply for human/animal consumption, wild plant food reserves and suitable land for crop growth.</p>
Cairn and Landscape Interaction: A Study of Human Ecodynamics in the North Atlantic
<p>Cairns are very versatile constructions, used for a variety of human activities. For this reason, this project focuses on the study of navigational and agricultural cairns as a way to further the study and understanding of human ecodynamics in the North Atlantic. The project was developed within the wider framework of DataARC, a ciberinfrastructure that interconnects and facilitates access to several North Atlantic datasets.</p> <p>The study uses a variety of interdisciplinary data, methodologies, tools, and approaches in its analysis. It is divided in two case studies. The first case study analyses the role of navigational cairns and their relationship with the roads and the general landscape while creating proposed routes between late medieval/early modern farm networks in Iceland. The results support the hypothesis that cairns were being used as road markers, and suggests a dependence between landscape features and cairn positioning, indicating landscape agency. The second case study focuses on analysing the position and effect of clearance cairns in the Scottish landscape. Archaeological and landscape data (i.e. soil quality, land compaction, erosion levels, and continued use in agricultural practices) were combined in a newly created dataset that was examined using statistical analysis. The results show a correlation between the presence of cairns and a high erosion risk while proposing three effects of clearance cairns on soils: so exhaustive they are no longer cultivable, they are cultivable but have a risk of erosion, and so non-exhaustive that they can still be cultivated.</p> <p>Overall, the project's findings highlight cairn's usefulness in the study of human ecodynamics. The datasets available here belong to both case studies. The first presents an Icelandic (Westfjords) navigational dataset with information from the routes the cairns are located in as well as their likelihood of being a route marker. The second offers a Scottish clearance cairn dataset which includes a variety of archaeological, historical, and geological data. There are two versions of this dataset: the raw version (ClearanceCairnDataset) and the processed version which offers an interactive table which classifies the cairns on the basis of soil type as well as a variety of other variables (InteractiveClearanceCairns). The code used to analyse this dataset and produce bar charts and pie charts has also been uploaded both in its original R file and a XPS version. Both datasets include metadata in PDF format. A CSV file with combinators created to connect these datasets to DataARC's concept map has also been included (CombinatorsForDataARC).</p>
Data analysis of an LC-MS dataset from a human urine biofluid cohort study
<p>Supplementary dataset and tutorials for the "<strong>Statistical analysis in metabolic phenotyping"</strong></p> <p> </p> <p>This repository contains Jupyter Notebooks with two examplar metabolomic data analysis workflows, applied to a liquid chromatography mass spectrometry dataset (LC-MS). The LC-MS dataset used comes from a metabolic phenotyping investigation of human urine biofluid samples from a dementia cohort. In this sample set, baseline spot urine samples (first sample collected after recruitment to the study) were collected as part of the AddNeuroMed<sup>1</sup> and ART/DCR study consortia, with the aim of identifying biomarkers of neurocognitive decline and Alzheimer’s disease. These samples were analysed by LC-MS and <sup>1</sup>H NMR, using the methods described by Lewis <em>et al</em><sup>2</sup> and Dona <em>et al</em>. Detailed information about this cohort and other available phenotypic measurements can be found in Lovestone and the ANMERGE<sup>3</sup> repository, which can be accessed via the Sage BioNetworks portal (<a href="https://doi.org/10.7303/syn22252881">https://doi.org/10.7303/syn22252881</a>). Information about the metabolic profiling experiments can be found in the study's MetaboLights entry: <a href="https://www.ebi.ac.uk/metabolights/MTBLS719">https://www.ebi.ac.uk/metabolights/MTBLS719</a>.</p> <p> </p> <p>1. Lovestone, S. <em>et al.</em> AddNeuroMed - The european collaboration for the discovery of novel biomarkers for alzheimer’s disease. in <em>Annals of the New York Academy of Sciences</em> (2009). doi:10.1111/j.1749-6632.2009.05064.x</p> <p>2. Lewis, M. R. <em>et al.</em> Development and Application of UPLC-ToF MS for Precision Large Scale Urinary Metabolic Phenotyping. <em>Anal. Chem.</em> <strong>88</strong>, acs.analchem.6b01481 (2016).</p> <p>3. Birkenbihl, C. <em>et al.</em> ANMerge: A comprehensive and accessible Alzheimer’s disease patient-level dataset. <em>medRxiv</em> (2020). doi:10.1101/2020.08.04.20168229</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.