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43
datasets available to search
ShareScore release 0.7.1
Dataset results
43 results for “Indel”
RNAIndel: discovering somatic coding indels from tumor RNA-Seq data (data package)
<p>Data package to run RNAIndel (> v.3.3.1) </p>
RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
<ol> <li>Data package for GRCh38.</li> <li>Data package for GRCh37.</li> <li>Sample dataset (GRCh38).</li> </ol>
SNP and InDels in peanut population
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Gene Ontology Enrichment Analysis of High and Moderate Impact SNPs and InDels in CHMX_Ch1 and QO Genomes
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Data from: A Poissonian model of indel rate variation for phylogenetic tree inference
While indel rate variation has been observed and analyzed in detail, it is not taken into account by current indel-aware phylogenetic reconstruction methods. In this work, we introduce a continuous time stochastic process, the geometric Poisson indel process, that generalizes the Poisson indel process by allowing insertion and deletion rates to vary across sites. We design an efficient algorithm for computing the probability of a given multiple sequence alignment based on our new indel model. We describe a method to construct phylogeny estimates from a fixed alignment using neighbor joining. Using simulation studies, we show that ignoring indel rate variation may have a detrimental effect on the accuracy of the inferred phylogenies, and that our proposed method can sidestep this issue by inferring latent indel rate categories. We also show that our phylogenetic inference method may be more stable to taxa subsampling than methods that either ignore indels or indel rate variation.
Data from: Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels
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Data from: A Poissonian model of indel rate variation for phylogenetic tree inference
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Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing
GEO Series GSE244179. Homo sapiens. 2 samples. Type: Other.
An Indel Polymorphism within pre-miR3131 Confers Risk for Hepatocellular Carcinoma
GEO Series GSE85123. Homo sapiens. 3 samples. Type: Expression profiling by array.
Effect of indel in promoter of CDC20 on gene expression in A375 human melanoma cell line.
GEO Series GSE206639. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Linking CRISPR/Cas9 double-strand break profiles to gene editing precision with BreakTag [indels]
GEO Series GSE227604. Homo sapiens. 40 samples. Type: Other.
Indel profiling of primary hepatocytes by deep sequencing
GEO Series GSE209543. Mus musculus. 65 samples. Type: Other.
Deep indel mutagenesis reveals the impact of insertions and deletions on protein stability and function
GEO Series GSE244096. Saccharomyces cerevisiae. 30 samples. Type: Other.
Indel rate analysis:Start codon disruption with CRISPR/Cas9 prevents murine Fuchs' endothelial corneal dystrophy
GEO Series GSE146998. Mus musculus. 4 samples. Type: Other.
Epigenome analysis of schwannomas arising as part of segmental schwannomatosis due to somatic mosaic SOX10 indel mutations
GEO Series GSE239715. Homo sapiens. 6 samples. Type: Methylation profiling by genome tiling array.
Systematic characterization of indel variants using a yeast-based protein folding sensor
GEO Series GSE270811. synthetic construct. 73 samples. Type: Other.
Cardiomyocyte ST-wave depression indel characterisation (NuTi Capture-C)
GEO Series GSE163172. Homo sapiens. 12 samples. Type: Other.
Indel array-based genotyping of pupariation site preference among Drosophila sechellia backcross progeny
GEO Series GSE44443. Drosophila simulans; Drosophila sechellia x Drosophila simulans; Drosophila melanogaster; Drosophila sechellia. 132 samples. Type: Genome variation profiling by genome tiling array.
HITI and INDEL analysis by next-generation sequencing
GEO Series GSE180875. Sus scrofa; Mus musculus. 4 samples. Type: Other.
On/Off targets INDEL analysis by Next Generation Sequencing
GEO Series GSE180117. Mus musculus. 10 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.